RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781139|ref|YP_003065552.1| hypothetical protein
CLIBASIA_05205 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.54
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)

Query: 23  SIPVSILKDSHLLQAHTEG 41
           S+P SIL+DS     + EG
Sbjct: 318 SLPPSILEDS---LENNEG 333



 Score = 27.2 bits (60), Expect = 0.84
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 31/67 (46%)

Query: 15  NRDWQRIASIPVS---ILKDSHLLQ-AH----------TEGDDVWVNKWLNNRDNASWRT 60
           ++D+  + SIP+S   I     ++Q AH          T G+       L  R      T
Sbjct: 227 DKDY--LLSIPISCPLI----GVIQLAHYVVTAKLLGFTPGE-------L--RSYLKGAT 271

Query: 61  --SEGYV 65
             S+G V
Sbjct: 272 GHSQGLV 278



 Score = 26.8 bits (59), Expect = 1.2
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 11/47 (23%)

Query: 19  QRIASIPVSILKDSHLLQAHTEGDDVWVNKWLNNRDNASWRTSEGYV 65
             +    +    +       T+G ++   +WL N  N      + Y+
Sbjct: 196 SELIRTTLDA--EKV----FTQGLNI--LEWLENPSN---TPDKDYL 231



 Score = 25.3 bits (55), Expect = 3.0
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 12/38 (31%)

Query: 5   QACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGD 42
            A  MA R            P     +S L +A  EG+
Sbjct: 128 TARIMAKR------------PFDKKSNSALFRAVGEGN 153


>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase,
           effector protein, T201A, aromatic hydrocarbons
           catabolism, FAD, flavoprotein; 1.52A {Pseudomonas
           mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B*
           3dhg_B*
          Length = 327

 Score = 26.3 bits (58), Expect = 1.7
 Identities = 6/49 (12%), Positives = 12/49 (24%)

Query: 2   EINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWL 50
            I+  C + T    R     A     +              ++W  +  
Sbjct: 147 TISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPG 195


>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix
           bundle, carboxylate bridge, metalloenzyme,
           oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri}
           SCOP: a.25.1.2 PDB: 2rdb_B* 1t0r_B 1t0s_B 1t0q_B*
           2ind_B*
          Length = 322

 Score = 25.2 bits (55), Expect = 3.8
 Identities = 8/49 (16%), Positives = 10/49 (20%)

Query: 2   EINQACAMATRKKNRDWQRIASIPVSILKDSHLLQAHTEGDDVWVNKWL 50
            I       T    R     A     +      +       DVW N   
Sbjct: 143 TITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPA 191


>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1
          PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
          Length = 138

 Score = 24.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 20 RIASIPVSILKDSHLLQAHTE 40
          RI    VS L D HL+  + E
Sbjct: 3  RINLTLVSELADQHLMAEYRE 23


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.127    0.409 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 568,279
Number of extensions: 17589
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 8
Length of query: 65
Length of database: 5,693,230
Length adjustment: 36
Effective length of query: 29
Effective length of database: 4,820,446
Effective search space: 139792934
Effective search space used: 139792934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)