Query gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:08:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781140.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aiv_A NUP116P, fragment of nu 41.1 14 0.00059 18.8 2.5 15 8-22 126-140 (149)
2 3kep_A Nucleoporin NUP145; nuc 40.4 13 0.00053 19.1 2.1 15 8-22 147-161 (174)
3 3nf5_A Nucleoporin NUP100; nuc 37.1 15 0.00063 18.6 2.1 15 8-22 136-150 (164)
4 2q5x_A Nuclear pore complex pr 34.0 18 0.00076 18.2 2.1 15 8-22 129-143 (155)
5 1ko6_A Nuclear pore complex pr 31.0 17 0.00072 18.3 1.6 15 8-22 168-182 (187)
6 3bgh_A Protein HPAA, putative 18.4 61 0.0026 15.2 2.4 22 2-23 126-147 (236)
7 2o1q_A Putative acetyl/propion 15.8 75 0.0032 14.7 2.8 18 6-23 31-48 (145)
8 1v9k_A Ribosomal large subunit 15.2 72 0.003 14.9 2.1 31 7-44 137-167 (228)
9 1bwy_A Protein (heart fatty ac 15.0 44 0.0019 16.0 1.0 13 1-13 1-13 (132)
10 2h6l_A Hypothetical protein; N 14.9 58 0.0024 15.4 1.6 12 12-23 128-139 (146)
No 1
>2aiv_A NUP116P, fragment of nucleoporin NUP116/NSP116; beta sandwich, transport protein; NMR {Saccharomyces cerevisiae}
Probab=41.15 E-value=14 Score=18.81 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.7
Q ss_pred EEEEEECCCCCCEEE
Q ss_conf 778876588885899
Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44)
Q Consensus 8 wklisydpetgrtvw 22 (44)
-+.|||||+||.=+.
T Consensus 126 ~~FisYd~~tG~W~F 140 (149)
T 2aiv_A 126 SKFESYDADSGTYVF 140 (149)
T ss_dssp SEEEEECTTTCCEEE
T ss_pred CEEEEEECCCCEEEE
T ss_conf 989989579988999
No 2
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysis, protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=40.37 E-value=13 Score=19.09 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=11.4
Q ss_pred EEEEEECCCCCCEEE
Q ss_conf 778876588885899
Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44)
Q Consensus 8 wklisydpetgrtvw 22 (44)
-++|||||+||.=+.
T Consensus 147 ~~FisYd~~tG~WvF 161 (174)
T 3kep_A 147 MNYISYNPFGGTWTF 161 (174)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEE
T ss_conf 989988589988999
No 3
>3nf5_A Nucleoporin NUP100; nuclear pore complex, structural genomics, PSI-2, PR structure initiative, NEW YORK structural genomix research consortium; 1.94A {Candida glabrata}
Probab=37.15 E-value=15 Score=18.64 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=11.6
Q ss_pred EEEEEECCCCCCEEE
Q ss_conf 778876588885899
Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44)
Q Consensus 8 wklisydpetgrtvw 22 (44)
-++|||||+||.=+.
T Consensus 136 ~~FvsYd~~tG~W~F 150 (164)
T 3nf5_A 136 THFESYDPASGTYCF 150 (164)
T ss_dssp CEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEE
T ss_conf 989878679888999
No 4
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A
Probab=34.01 E-value=18 Score=18.19 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=11.4
Q ss_pred EEEEEECCCCCCEEE
Q ss_conf 778876588885899
Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44)
Q Consensus 8 wklisydpetgrtvw 22 (44)
-+.|||||+||-=+.
T Consensus 129 ~~FisYd~~tG~W~F 143 (155)
T 2q5x_A 129 AQFKEYRPETGSWVF 143 (155)
T ss_dssp CEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEE
T ss_conf 999978579978999
No 5
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=31.01 E-value=17 Score=18.34 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=11.1
Q ss_pred EEEEEECCCCCCEEE
Q ss_conf 778876588885899
Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44)
Q Consensus 8 wklisydpetgrtvw 22 (44)
-+.|||||+||--+.
T Consensus 168 ~~FisYd~~tG~W~F 182 (187)
T 1ko6_A 168 AQFKEYRPETGSWVF 182 (187)
T ss_dssp CEEEEEEGGGTEEEE
T ss_pred CEEEEEECCCCEEEE
T ss_conf 989878479868999
No 6
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin homolog; structural genomics, unknown function, PSI-2; 2.45A {Helicobacter pylori 26695}
Probab=18.40 E-value=61 Score=15.25 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.9
Q ss_pred CEECCCEEEEEECCCCCCEEEE
Q ss_conf 4015727788765888858999
Q gi|254781140|r 2 DIYDGSWKLISYDPETGRTVWY 23 (44)
Q Consensus 2 diydgswklisydpetgrtvwy 23 (44)
|+-+|+.+|--|.|++||.+--
T Consensus 126 ~~ssG~v~l~f~EP~S~~vi~s 147 (236)
T 3bgh_A 126 DMSSGYLNLNFVEPKSEDIIHS 147 (236)
T ss_dssp EEEEEEEEEEEECTTTCCEEEE
T ss_pred ECCCCEEEEEEECCCCCCHHHH
T ss_conf 5027669999865776452877
No 7
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum PM1} SCOP: b.82.1.21
Probab=15.81 E-value=75 Score=14.74 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.1
Q ss_pred CCEEEEEECCCCCCEEEE
Q ss_conf 727788765888858999
Q gi|254781140|r 6 GSWKLISYDPETGRTVWY 23 (44)
Q Consensus 6 gswklisydpetgrtvwy 23 (44)
-.||+++.||++|..+..
T Consensus 31 ~~~k~L~~d~~tG~~~~l 48 (145)
T 2o1q_A 31 IRWKLLHVSPEMGSWTAI 48 (145)
T ss_dssp CEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEECCCCCCEEEE
T ss_conf 699996028888739999
No 8
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=15.17 E-value=72 Score=14.85 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=17.7
Q ss_pred CEEEEEECCCCCCEEEEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 27788765888858999970841022232100445479
Q gi|254781140|r 7 SWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44 (44)
Q Consensus 7 swklisydpetgrtvwymldnqkrcvsdrlscipsygd 44 (44)
..-|+...|+|||| .|-|.--..+.| |-.||
T Consensus 137 ~~slv~~~~~TGRt------HQIRvHla~lG~-PIvGD 167 (228)
T 1v9k_A 137 FATLVRCSPVTGRT------HQIRVHTQYAGH-PIAFD 167 (228)
T ss_dssp SEEEEEEEESSCCT------THHHHHHHHTTC-CBTTC
T ss_pred CCEEEEEEECCCCH------HHHHHHHHHCCC-EEECC
T ss_conf 86799999586838------999999874797-48367
No 9
>1bwy_A Protein (heart fatty acid binding protein); intracellular lipid binding protein, heart muscle; NMR {Bos taurus} SCOP: b.60.1.2 PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A*
Probab=14.96 E-value=44 Score=16.02 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=7.8
Q ss_pred CCEECCCEEEEEE
Q ss_conf 9401572778876
Q gi|254781140|r 1 MDIYDGSWKLISY 13 (44)
Q Consensus 1 mdiydgswklisy 13 (44)
|+-+.|.|||.+-
T Consensus 1 ~~aF~Gtwkl~~s 13 (132)
T 1bwy_A 1 VDAFVGTWKLVDS 13 (132)
T ss_dssp CTTTCEEEEEEEE
T ss_pred CCCCCEEEEEEEC
T ss_conf 9764589999862
No 10
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=14.94 E-value=58 Score=15.37 Aligned_cols=12 Identities=33% Similarity=0.911 Sum_probs=9.7
Q ss_pred EECCCCCCEEEE
Q ss_conf 765888858999
Q gi|254781140|r 12 SYDPETGRTVWY 23 (44)
Q Consensus 12 sydpetgrtvwy 23 (44)
.+|||||-++|.
T Consensus 128 ~~D~~tGl~Lw~ 139 (146)
T 2h6l_A 128 AFDEQTGLFLWL 139 (146)
T ss_dssp EECTTTSSEEEC
T ss_pred CCCCCCCCCHHH
T ss_conf 038888937320
Done!