Query gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:28:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781140.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 g1ko6.1 b.119.1.1 (A:,B:) C-te 34.7 7.9 0.00057 18.9 1.6 15 8-22 133-147 (158) 2 d1dq3a1 b.86.1.2 (A:1-128,A:41 16.7 36 0.0026 15.2 2.1 21 7-27 50-70 (168) 3 d1o8va_ b.60.1.2 (A:) Fatty ac 16.6 24 0.0017 16.2 1.2 13 1-13 1-13 (133) 4 d2o1qa1 b.82.1.21 (A:1-144) Pu 16.3 42 0.0031 14.8 2.8 18 6-23 30-47 (144) 5 d1mbya_ d.223.1.1 (A:) Serine/ 16.0 43 0.0031 14.8 2.9 40 3-42 22-69 (75) 6 d2h6la1 d.290.1.3 (A:1-138) Hy 15.9 34 0.0024 15.4 1.8 11 12-22 128-138 (138) 7 d1tdha3 g.39.1.8 (A:247-290) E 15.3 37 0.0027 15.2 1.9 15 12-26 24-38 (44) 8 d1fdqa_ b.60.1.2 (A:) Brain fa 14.8 28 0.002 15.8 1.2 13 1-13 1-13 (131) 9 d1hmsa_ b.60.1.2 (A:) Muscle f 13.5 32 0.0023 15.5 1.2 13 1-13 1-13 (131) 10 d1v9ka_ d.265.1.3 (A:) Ribosom 13.0 52 0.0038 14.3 2.1 31 7-44 136-166 (227) No 1 >g1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]} Probab=34.69 E-value=7.9 Score=18.89 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=11.4 Q ss_pred EEEEEECCCCCCEEE Q ss_conf 778876588885899 Q gi|254781140|r 8 WKLISYDPETGRTVW 22 (44) Q Consensus 8 wklisydpetgrtvw 22 (44) -+.|||||+||-=+. T Consensus 133 ~~FisYdp~tG~W~F 147 (158) T g1ko6.1 133 AQFKEYRPETGSWVF 147 (158) T ss_dssp CEEEEEEGGGTEEEE T ss_pred CEEEEEECCCCEEEE T ss_conf 989878579868999 No 2 >d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=16.69 E-value=36 Score=15.21 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=15.6 Q ss_pred CEEEEEECCCCCCEEEEEECC Q ss_conf 277887658888589999708 Q gi|254781140|r 7 SWKLISYDPETGRTVWYMLDN 27 (44) Q Consensus 7 swklisydpetgrtvwymldn 27 (44) .-+..|+||++|+.+|-.... T Consensus 50 ~v~V~s~d~~tg~~~~~~v~~ 70 (168) T d1dq3a1 50 PIYVKSFDPESKRVVKGKVNV 70 (168) T ss_dssp CCEEEEEETTTTEEEEEEEEE T ss_pred CEEEEEECCCCCCEEEEEEEE T ss_conf 569999728899199999799 No 3 >d1o8va_ b.60.1.2 (A:) Fatty acid-binding protein homolog 1 {Flat worm (Echinococcus granulosus) [TaxId: 6210]} Probab=16.58 E-value=24 Score=16.21 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=7.6 Q ss_pred CCEECCCEEEEEE Q ss_conf 9401572778876 Q gi|254781140|r 1 MDIYDGSWKLISY 13 (44) Q Consensus 1 mdiydgswklisy 13 (44) |+-+.|.|||.+- T Consensus 1 m~~f~G~wkl~~s 13 (133) T d1o8va_ 1 MEAFLGTWKMEKS 13 (133) T ss_dssp CGGGCEEEEEEEE T ss_pred CCCCCEEEEECCC T ss_conf 9765589998536 No 4 >d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]} Probab=16.31 E-value=42 Score=14.82 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.0 Q ss_pred CCEEEEEECCCCCCEEEE Q ss_conf 727788765888858999 Q gi|254781140|r 6 GSWKLISYDPETGRTVWY 23 (44) Q Consensus 6 gswklisydpetgrtvwy 23 (44) -+||.++.||++|..+.. T Consensus 30 ~~~k~L~~d~~tg~~~~l 47 (144) T d2o1qa1 30 IRWKLLHVSPEMGSWTAI 47 (144) T ss_dssp CEEEEEEEETTTTEEEEE T ss_pred EEEEEEEECCCCCCEEEE T ss_conf 699994367888839999 No 5 >d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=15.98 E-value=43 Score=14.77 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=26.7 Q ss_pred EECCCEE-------EEEECCCCCCEEEEEE-CCCCHHHHHHHHCCCCC Q ss_conf 0157277-------8876588885899997-08410222321004454 Q gi|254781140|r 3 IYDGSWK-------LISYDPETGRTVWYML-DNQKRCVSDRLSCIPSY 42 (44) Q Consensus 3 iydgswk-------lisydpetgrtvwyml-dnqkrcvsdrlscipsy 42 (44) .+|||-- -|.|-.-.|.+.-|-- |+-..-|.+||+|+|+- T Consensus 22 f~DGS~l~v~~~~~~I~Yt~~~G~~~~y~~~d~LP~~vreKL~~lp~i 69 (75) T d1mbya_ 22 FNDGSQLVMQAGVSSISYTSPDGQTTRYGENEKLPEYIKQKLQLLSSI 69 (75) T ss_dssp ETTSCEEEEEEEEEEEEEECTTSCEEEEETTSCCCHHHHHHHTTTCCE T ss_pred ECCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 758978999517536999889996266686554439999998601799 No 6 >d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=15.91 E-value=34 Score=15.35 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=7.4 Q ss_pred EECCCCCCEEE Q ss_conf 76588885899 Q gi|254781140|r 12 SYDPETGRTVW 22 (44) Q Consensus 12 sydpetgrtvw 22 (44) .+|||||-++| T Consensus 128 ~~D~~tGl~Lw 138 (138) T d2h6la1 128 AFDEQTGLFLW 138 (138) T ss_dssp EECTTTSSEEE T ss_pred ECCCCCCCCCC T ss_conf 20876694469 No 7 >d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Probab=15.29 E-value=37 Score=15.15 Aligned_cols=15 Identities=40% Similarity=0.844 Sum_probs=10.3 Q ss_pred EECCCCCCEEEEEEC Q ss_conf 765888858999970 Q gi|254781140|r 12 SYDPETGRTVWYMLD 26 (44) Q Consensus 12 sydpetgrtvwymld 26 (44) |.--..|||+|+--| T Consensus 24 sL~D~~GRTIWF~Gd 38 (44) T d1tdha3 24 SLQDRHGRTIWFQGD 38 (44) T ss_dssp EEECTTSCEEEESSC T ss_pred HHHCCCCCEEEECCC T ss_conf 444068977985389 No 8 >d1fdqa_ b.60.1.2 (A:) Brain fatty acid binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=14.83 E-value=28 Score=15.80 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=6.8 Q ss_pred CCEECCCEEEEEE Q ss_conf 9401572778876 Q gi|254781140|r 1 MDIYDGSWKLISY 13 (44) Q Consensus 1 mdiydgswklisy 13 (44) |+-+-|.|||++- T Consensus 1 ~e~F~Gtwkl~~s 13 (131) T d1fdqa_ 1 VEAFCATWKLTNS 13 (131) T ss_dssp CGGGCEEEEEEEE T ss_pred CCCCCEEEEEEEC T ss_conf 9767689999642 No 9 >d1hmsa_ b.60.1.2 (A:) Muscle fatty acid binding protein (m-fabp) {Human (Homo sapiens) [TaxId: 9606]} Probab=13.49 E-value=32 Score=15.47 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=7.0 Q ss_pred CCEECCCEEEEEE Q ss_conf 9401572778876 Q gi|254781140|r 1 MDIYDGSWKLISY 13 (44) Q Consensus 1 mdiydgswklisy 13 (44) |+-+.|.|||.+- T Consensus 1 ~~~F~Gtwkl~~s 13 (131) T d1hmsa_ 1 VDAFLGTWKLVDS 13 (131) T ss_dssp CGGGCEEEEEEEE T ss_pred CCCCCEEEEEEEE T ss_conf 9766589999850 No 10 >d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]} Probab=12.99 E-value=52 Score=14.30 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=16.6 Q ss_pred CEEEEEECCCCCCEEEEEECCCCHHHHHHHHCCCCCCC Q ss_conf 27788765888858999970841022232100445479 Q gi|254781140|r 7 SWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44 (44) Q Consensus 7 swklisydpetgrtvwymldnqkrcvsdrlscipsygd 44 (44) ...|+.-.|+|||| .|-|.--..+.| |-.|| T Consensus 136 ~~slv~~~~~TGRt------HQIRvHla~lG~-PIvGD 166 (227) T d1v9ka_ 136 FATLVRCSPVTGRT------HQIRVHTQYAGH-PIAFD 166 (227) T ss_dssp SEEEEEEEESSCCT------THHHHHHHHTTC-CBTTC T ss_pred CCEEEEEEECCCCH------HHHHHHHHHCCC-EECCC T ss_conf 73799999465734------788777764595-33467 Done!