BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781140|ref|YP_003065553.1| hypothetical protein
CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62]
(44 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040817|gb|ACT57613.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 44
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44
MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD
Sbjct: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44
>gi|315122532|ref|YP_004063021.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495934|gb|ADR52533.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 118
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
MDIYDGSWKLISYDPETGRT+WY+ DNQ+
Sbjct: 13 MDIYDGSWKLISYDPETGRTIWYLSDNQR 41
>gi|150397026|ref|YP_001327493.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
gi|150028541|gb|ABR60658.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
Length = 107
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
M I DGSW L YD TGR+VW+ D +K
Sbjct: 1 MIIRDGSWSLYDYDQMTGRSVWHYFDGEK 29
>gi|227822440|ref|YP_002826412.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
gi|227341441|gb|ACP25659.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
Length = 107
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
M + DG WKL YD TGR+VW M D +
Sbjct: 1 MIVRDGEWKLFDYDFLTGRSVWVMEDGNR 29
>gi|256371680|ref|YP_003109504.1| extracellular solute-binding protein family 5 [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008264|gb|ACU53831.1| extracellular solute-binding protein family 5 [Acidimicrobium
ferrooxidans DSM 10331]
Length = 610
Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 3 IYDGSWKLISYDPETGRTVW 22
+ DG WKL SYDP TGRTV+
Sbjct: 248 VVDGPWKLQSYDPTTGRTVF 267
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781140|ref|YP_003065553.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040817|gb|ACT57613.1| hypothetical protein CLIBASIA_05210 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 44
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44
MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD
Sbjct: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCIPSYGD 44
>gi|315122532|ref|YP_004063021.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495934|gb|ADR52533.1| hypothetical protein CKC_03920 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 118
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
MDIYDGSWKLISYDPETGRT+WY+ DNQ+
Sbjct: 13 MDIYDGSWKLISYDPETGRTIWYLSDNQR 41
>gi|150397026|ref|YP_001327493.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
gi|150028541|gb|ABR60658.1| hypothetical protein Smed_1823 [Sinorhizobium medicae WSM419]
Length = 107
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
M I DGSW L YD TGR+VW+ D +K
Sbjct: 1 MIIRDGSWSLYDYDQMTGRSVWHYFDGEK 29
>gi|227822440|ref|YP_002826412.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
gi|227341441|gb|ACP25659.1| hypothetical protein NGR_c18950 [Sinorhizobium fredii NGR234]
Length = 107
Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1 MDIYDGSWKLISYDPETGRTVWYMLDNQK 29
M + DG WKL YD TGR+VW M D +
Sbjct: 1 MIVRDGEWKLFDYDFLTGRSVWVMEDGNR 29
>gi|256371680|ref|YP_003109504.1| extracellular solute-binding protein family 5 [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008264|gb|ACU53831.1| extracellular solute-binding protein family 5 [Acidimicrobium
ferrooxidans DSM 10331]
Length = 610
Score = 34.6 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 3 IYDGSWKLISYDPETGRTVWYMLD 26
+ DG WKL SYDP TGRTV+ D
Sbjct: 248 VVDGPWKLQSYDPTTGRTVFARND 271
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.320 0.144 0.498
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,102,356,795
Number of Sequences: 14124377
Number of extensions: 30076134
Number of successful extensions: 75462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75452
Number of HSP's gapped (non-prelim): 10
length of query: 44
length of database: 4,842,793,630
effective HSP length: 18
effective length of query: 26
effective length of database: 4,588,554,844
effective search space: 119302425944
effective search space used: 119302425944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.8 bits)