RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781140|ref|YP_003065553.1| hypothetical protein
CLIBASIA_05210 [Candidatus Liberibacter asiaticus str. psy62]
         (44 letters)



>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA
          carboxylase subunit alpha Mpe_A3659 {Rubrivivax
          gelatinosus [TaxId: 28068]}
          Length = 144

 Score = 23.4 bits (50), Expect = 5.6
 Identities = 6/18 (33%), Positives = 7/18 (38%)

Query: 7  SWKLISYDPETGRTVWYM 24
           WKL+   PE G      
Sbjct: 31 RWKLLHVSPEMGSWTAIF 48


>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon
          Pyrococcus furiosus [TaxId: 2261]}
          Length = 168

 Score = 23.1 bits (49), Expect = 6.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 9  KLISYDPETGRTVW 22
           + S+DPE+ R V 
Sbjct: 52 YVKSFDPESKRVVK 65


>g1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of
           nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 158

 Score = 22.8 bits (49), Expect = 8.3
 Identities = 6/14 (42%), Positives = 7/14 (50%), Gaps = 2/14 (14%)

Query: 9   KLISYDPETGRTVW 22
           +   Y PETG   W
Sbjct: 134 QFKEYRPETG--SW 145


>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD)
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 113

 Score = 22.6 bits (48), Expect = 9.1
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 1  MDIYDGSWKLISYDPETGRTVWYMLDNQKRCVSDRLSCI 39
          +      W +++Y   T R     ++     V      +
Sbjct: 33 ISAEGSGWAVLTYCQRTDRLFIMQVEKHNVNVIPHFRIL 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.473 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 192,033
Number of extensions: 5595
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 13
Length of query: 44
Length of database: 2,407,596
Length adjustment: 16
Effective length of query: 28
Effective length of database: 2,187,916
Effective search space: 61261648
Effective search space used: 61261648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)