Query gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 196
No_of_seqs 124 out of 155
Neff 6.0
Searched_HMMs 23785
Date Wed Jun 1 02:01:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781141.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b40_A PVDM, probable dipeptid 81.8 1.5 6.2E-05 22.6 4.2 48 90-141 366-413 (417)
2 3lr2_A Major ampullate spidroi 74.7 2.9 0.00012 20.6 3.9 41 91-131 8-49 (137)
3 1itu_A Renal dipeptidase; glyc 68.3 5.9 0.00025 18.6 5.2 47 90-140 295-342 (369)
4 1b4u_A LIGA, LIGB, protocatech 66.5 3.1 0.00013 20.5 2.6 42 93-134 44-85 (139)
5 2rag_A Dipeptidase; aminohydro 65.5 6.7 0.00028 18.2 5.0 48 90-141 367-414 (417)
6 3ly0_A Dipeptidase AC. metallo 60.7 7.9 0.00033 17.7 3.8 42 92-137 315-356 (364)
7 2i5g_A Amidohydrolase; NYSGXRC 52.0 11 0.00047 16.7 4.5 42 91-136 282-323 (325)
8 2w84_A Peroxisomal membrane pr 46.5 4.6 0.00019 19.3 0.7 31 93-123 25-55 (70)
9 3oq9_A Tumor necrosis factor r 43.7 15 0.00063 15.9 3.3 25 99-123 7-32 (86)
10 3ff5_A PEX14P, peroxisomal bio 42.2 4.5 0.00019 19.4 0.1 30 94-123 21-50 (54)
11 2ev1_A Hypothetical protein RV 41.2 16 0.00069 15.6 3.7 43 96-140 33-75 (222)
12 1q7e_A Hypothetical protein YF 39.6 14 0.00059 16.1 2.3 12 177-188 408-419 (428)
13 2kru_A Light-independent proto 39.0 15 0.00064 15.8 2.4 43 81-127 8-50 (63)
14 1fad_A Protein (FADD protein); 37.8 18 0.00077 15.3 4.3 27 98-124 20-46 (99)
15 2fcw_A Alpha-2-macroglobulin r 35.6 20 0.00084 15.1 3.6 28 91-123 2-29 (109)
16 1gu9_A Alkylhydroperoxidase D; 35.5 18 0.00074 15.4 2.3 32 84-120 4-35 (177)
17 2jy5_A Ubiquilin-1; UBA, alter 35.0 11 0.00048 16.7 1.2 28 91-121 3-30 (52)
18 2o71_A Death domain-containing 33.4 14 0.00061 16.0 1.5 27 98-124 30-56 (115)
19 1wxp_A THO complex subunit 1; 31.9 14 0.0006 16.0 1.3 26 99-124 25-50 (110)
20 2l09_A ASR4154 protein; proto- 30.3 24 0.001 14.5 2.2 42 81-126 7-48 (62)
21 2of5_A Death domain-containing 30.1 12 0.00049 16.6 0.6 27 98-124 30-56 (114)
22 3id7_A Dipeptidase; streptomyc 29.7 25 0.001 14.4 6.0 50 90-143 327-377 (400)
23 2c0s_A Conserved domain protei 29.5 25 0.001 14.4 3.5 37 100-138 11-47 (64)
24 1ngr_A P75 low affinity neurot 29.3 25 0.0011 14.4 2.6 35 90-124 7-42 (85)
25 2yqf_A Ankyrin-1; death domain 29.2 25 0.0011 14.4 2.4 26 99-124 25-50 (111)
26 2ou3_A Tellurite resistance pr 29.2 17 0.0007 15.6 1.3 34 93-126 106-139 (161)
27 2bzb_A Conserved domain protei 28.9 26 0.0011 14.3 3.0 30 100-131 11-40 (62)
28 2of5_H Leucine-rich repeat and 28.5 16 0.00065 15.8 1.0 25 100-124 21-45 (118)
29 3ezq_B Protein FADD; apoptosis 26.0 16 0.00065 15.8 0.7 23 102-124 16-38 (122)
30 1ywf_A Phosphotyrosine protein 25.7 29 0.0012 14.0 2.2 19 105-123 272-290 (296)
31 3neh_A Renal dipeptidase famil 24.7 23 0.00097 14.6 1.3 19 113-131 289-307 (318)
32 1ich_A TNF-1, tumor necrosis f 24.6 30 0.0013 13.9 1.9 20 105-124 27-46 (112)
33 3cz8_A Putative sporulation-sp 23.7 32 0.0013 13.7 3.1 24 94-117 91-114 (319)
34 2vjq_A Formyl-coenzyme A trans 23.3 15 0.00065 15.8 0.2 30 93-122 307-338 (428)
35 3ezq_A Tumor necrosis factor r 22.2 34 0.0014 13.5 3.1 22 104-125 21-42 (115)
36 2kna_A Baculoviral IAP repeat- 21.0 21 0.00087 14.9 0.5 43 88-130 12-54 (104)
37 3m66_A Mterf3, mterf domain-co 20.4 37 0.0015 13.3 3.4 42 81-123 127-168 (270)
No 1
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=81.84 E-value=1.5 Score=22.61 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8365898999999999999999759998999720599999999999999999
Q gi|254781141|r 90 FPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQS 141 (196)
Q Consensus 90 iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~~ 141 (196)
+|.|.|... .-+|..-+...|||+++|..|.--..+.|++..+++.+-
T Consensus 366 ~~gl~d~s~----~p~l~~~L~~rGyse~~I~kI~ggN~lRvl~eV~~~a~~ 413 (417)
T 3b40_A 366 VDGWKDVSE----IRNVTAELITRGYSDADIAKLWGGNFLRAWGEVQKRAKP 413 (417)
T ss_dssp BBTBCSGGG----HHHHHHHHHHHTCCHHHHHHHTTHHHHHHHHHHHHTC--
T ss_pred CCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877679888----999999999879899999999878899999999998602
No 2
>3lr2_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT wild- structural protein; 1.70A {Euprosthenops australis} PDB: 3lr8_A* 3lr6_A* 3lrd_A*
Probab=74.69 E-value=2.9 Score=20.62 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHHCCHHHHHH
Q ss_conf 365898999999999999999-75999899972059999999
Q gi|254781141|r 91 PQTKDPAQRENFFKNLFRIGN-ILGFQKEEMVDITDHRLLSL 131 (196)
Q Consensus 91 Pe~~D~~k~~~~~~~i~~~~~-~~Gfs~eEi~~v~D~R~i~v 131 (196)
--|.+|..++.|...++..+. +-.||.|++..+.+-.-.++
T Consensus 8 tPWss~~~A~~Fi~~f~~~~~~SgaFs~~q~dDm~~I~~ti~ 49 (137)
T 3lr2_A 8 TPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMV 49 (137)
T ss_dssp STTTCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999986889999999999987089999899988999999999
No 3
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=68.27 E-value=5.9 Score=18.60 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 836-589899999999999999975999899972059999999999999999
Q gi|254781141|r 90 FPQ-TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQ 140 (196)
Q Consensus 90 iPe-~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~ 140 (196)
.|+ |.|+. ..-+|.+.+...|||++||..|.--..+.+++..|++.+
T Consensus 295 ~p~gl~~~~----~~p~l~~~L~~rGys~~~I~ki~g~N~lRv~~~V~~~~~ 342 (369)
T 1itu_A 295 VPEGLEDVS----KYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASN 342 (369)
T ss_dssp CCBTCSSTT----CHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988877877----889999999986999999999998889999999999998
No 4
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=66.50 E-value=3.1 Score=20.46 Aligned_cols=42 Identities=7% Similarity=-0.021 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 589899999999999999975999899972059999999999
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYY 134 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~ 134 (196)
+..|+-++.|..+-..|+..+|.|++|...|.+-..+.+++-
T Consensus 44 Ln~~enR~~F~aDe~Ayl~~~~LTeEqr~AV~~rD~~~Li~l 85 (139)
T 1b4u_A 44 LMKAENRERFKADESAYLDEWNLTPAAKAAVLARDYNAMIDE 85 (139)
T ss_dssp TTSHHHHHHHHHCHHHHHHTTTCCHHHHHHHHHTCHHHHHHT
T ss_pred HCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 768999999983999998707999999999982019999993
No 5
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, PSI-2, protein structure initiative; 2.00A {Caulobacter crescentus CB15}
Probab=65.46 E-value=6.7 Score=18.23 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 8365898999999999999999759998999720599999999999999999
Q gi|254781141|r 90 FPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQS 141 (196)
Q Consensus 90 iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~~ 141 (196)
.|.|.|+. ..-+|.+.+...|||++||..|.--..+.|++-+-.+.+.
T Consensus 367 ~~gl~d~~----~~p~l~~~L~~rGyse~~I~kI~GgN~lRV~~~ve~~a~~ 414 (417)
T 2rag_A 367 MDGFEDIT----DLPKITARLKAEGYSDADIEAIWSGNVLRIVDAAQAYAKS 414 (417)
T ss_dssp BBTBSSGG----GTHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87768987----8999999999879899999999849999999999999998
No 6
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=60.68 E-value=7.9 Score=17.74 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 6589899999999999999975999899972059999999999999
Q gi|254781141|r 92 QTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQI 137 (196)
Q Consensus 92 e~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~ 137 (196)
.|.|+.. .-+|.+.+...|||++||..|.--..+.+++.-|+
T Consensus 315 gl~~~~~----~p~l~~~L~~rG~se~~i~ki~g~N~lRv~~~vw~ 356 (364)
T 3ly0_A 315 GIADVTG----LPALQAAMRAHGYDEPLMRKLCHENWYGLLERTWG 356 (364)
T ss_dssp TTCSGGG----HHHHHHHHHHHTCCHHHHHHHHTHHHHHHHHHHC-
T ss_pred CCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7778777----99999999986989999999999999999999962
No 7
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=51.98 E-value=11 Score=16.73 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
Q ss_conf 3658989999999999999997599989997205999999999999
Q gi|254781141|r 91 PQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQ 136 (196)
Q Consensus 91 Pe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am 136 (196)
+.+.|+. ...+|...+...|||+++|..|.--..+.+++.-|
T Consensus 282 ~gl~~~~----~~~~l~~~L~~rG~se~~I~ki~GgN~lRv~~eVw 323 (325)
T 2i5g_A 282 LGIRTVG----EFPNLTETLLKRGMPERVVRKVMGENWVRVLRDVW 323 (325)
T ss_dssp BTCSSGG----GTHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7778977----88999999998698999999999899999999986
No 8
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=46.51 E-value=4.6 Score=19.32 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 5898999999999999999759998999720
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v 123 (196)
+.||.++..=...-+.|+.+-|.|++||...
T Consensus 25 L~dp~V~~sp~~~K~~FL~sKGLt~~EI~~A 55 (70)
T 2w84_A 25 LQNSRVRQSPLATRRAFLKKKGLTDEEIDMA 55 (70)
T ss_dssp HCSTTGGGSCHHHHHHHHHHTTCCHHHHHHH
T ss_pred HCCHHHHCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 5683120187899999999859999999999
No 9
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=43.74 E-value=15 Score=15.90 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHH-HHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999-999999999759998999720
Q gi|254781141|r 99 RENF-FKNLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 99 ~~~~-~~~i~~~~~~~Gfs~eEi~~v 123 (196)
++.+ ..++..+|..+|||+.+|..|
T Consensus 7 a~~l~~~~wk~lar~Lgls~~~I~~I 32 (86)
T 3oq9_A 7 AEDMTIQEAKKFARENNIKEGKIDEI 32 (86)
T ss_dssp HHHSCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 97789999999999919899999999
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=42.25 E-value=4.5 Score=19.40 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 898999999999999999759998999720
Q gi|254781141|r 94 KDPAQRENFFKNLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 94 ~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v 123 (196)
.||.++..=...-+.|+.+-|.|++||...
T Consensus 21 ~~p~V~~sp~~~K~~FL~sKGLt~~EI~~A 50 (54)
T 3ff5_A 21 QNSRVRQSPLATRRAFLKKKGLTDEEIDLA 50 (54)
T ss_dssp HCTTGGGSCHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 684130087899999999869999999999
No 11
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=41.19 E-value=16 Score=15.64 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 899999999999999975999899972059999999999999999
Q gi|254781141|r 96 PAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQ 140 (196)
Q Consensus 96 ~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~ 140 (196)
+..+-.++.++++|+.+.|||-+||... + |.+.++-+-.+++.
T Consensus 33 ~g~~r~~R~~li~~l~~~G~~~de~~~a-~-~~~~l~~~r~lg~~ 75 (222)
T 2ev1_A 33 GGTARAERAKLVEWLLEQGITPDEIRAT-N-PPLLLATRHLVGDD 75 (222)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHS-S-SCTTHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHCCC-C-CHHHHHHHHHHCCC
T ss_conf 7620488999999999859987786025-4-13567888873689
No 12
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structure initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=39.55 E-value=14 Score=16.10 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=5.9
Q ss_pred HHHHHHHHCCHH
Q ss_conf 999997619999
Q gi|254781141|r 177 AIQKLYQTGSLY 188 (196)
Q Consensus 177 a~~rL~ksG~v~ 188 (196)
.+..|++.|-|+
T Consensus 408 eI~~L~~~gvI~ 419 (428)
T 1q7e_A 408 EIAAMKQNHAIE 419 (428)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHCCCEE
T ss_conf 999999887475
No 13
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=38.98 E-value=15 Score=15.84 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHH
Q ss_conf 99999999583658989999999999999997599989997205999
Q gi|254781141|r 81 AENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127 (196)
Q Consensus 81 ~e~~~L~e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R 127 (196)
.+....+..||=| ++.+.+.++-.|+...|++.=.+.-++++|
T Consensus 8 ~eA~~~L~kIP~F----VR~kar~~~E~~Are~G~~~IT~evl~~Ak 50 (63)
T 2kru_A 8 AEAEKMLGKVPFF----VRKKVRKNTDNYAREIGEPVVTADVFRKAK 50 (63)
T ss_dssp HHHHHHHTTSCHH----HHHHHHHHHHHHHHHHTCSEECHHHHHHHH
T ss_pred HHHHHHHHHCCHH----HHHHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 9999998839998----899999999999999499966699999999
No 14
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=37.79 E-value=18 Score=15.30 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 999999999999997599989997205
Q gi|254781141|r 98 QRENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 98 k~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
.+..+..+...+|..+|||+.+|..|.
T Consensus 20 ia~~lg~~W~~lar~Lgls~~~I~~I~ 46 (99)
T 1fad_A 20 VCDNVGRDWKRLARELKVSEAKMDGIE 46 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999887849999999391999999999
No 15
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=35.58 E-value=20 Score=15.07 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 365898999999999999999759998999720
Q gi|254781141|r 91 PQTKDPAQRENFFKNLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 91 Pe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v 123 (196)
-||..|.+ .+|-..|.+-.||++|+.++
T Consensus 2 ~EF~EPkV-----q~LW~~A~~~NFT~dELeSl 29 (109)
T 2fcw_A 2 AEFEEPRV-----IDLWDLAQSANLTDKELEAF 29 (109)
T ss_dssp CSCCSHHH-----HHHHHHHHTSCCCHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHCCCCHHHHHHH
T ss_conf 87545789-----99999998769998999999
No 16
>1gu9_A Alkylhydroperoxidase D; oxidoreductase; 1.9A {Mycobacterium tuberculosis} SCOP: a.152.1.1 PDB: 1knc_A 1me5_A 1lw1_A
Probab=35.51 E-value=18 Score=15.43 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=18.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999958365898999999999999999759998999
Q gi|254781141|r 84 QQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120 (196)
Q Consensus 84 ~~L~e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi 120 (196)
+.|.+.||||.-+ ++-++.....+-+++++++
T Consensus 4 e~lk~~lP~yakD-----~klNl~~v~~~~~L~~~q~ 35 (177)
T 1gu9_A 4 EKLKAALPEYAKD-----IKLNLSSITRSSVLDQEQL 35 (177)
T ss_dssp CHHHHHCCGGGHH-----HHHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHCHHHHHH-----HHHHHHHHHCCCCCCHHHH
T ss_conf 9998878599999-----9887987534368989999
No 17
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.00 E-value=11 Score=16.67 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 3658989999999999999997599989997
Q gi|254781141|r 91 PQTKDPAQRENFFKNLFRIGNILGFQKEEMV 121 (196)
Q Consensus 91 Pe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~ 121 (196)
|.+.+|+ .-+..-...+.+.||++++.+
T Consensus 3 p~~~~pe---~~y~~qL~~L~eMGF~d~~~n 30 (52)
T 2jy5_A 3 PEFQNPE---VRFQQQLEQLSAMGFLNREAN 30 (52)
T ss_dssp CCTTSTT---TTTHHHHHHHHHTTCCCHHHH
T ss_pred CCCCCHH---HHHHHHHHHHHHCCCCCHHHH
T ss_conf 8878889---999999999999499966999
No 18
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=33.43 E-value=14 Score=16.01 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 999999999999997599989997205
Q gi|254781141|r 98 QRENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 98 k~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
.+..+..+...+|..+|||+.+|..|.
T Consensus 30 ia~~lg~~Wk~Lar~Lgls~~~I~~I~ 56 (115)
T 2o71_A 30 LAQRLGPEWEPMVLSLGLSQTDIYRCK 56 (115)
T ss_dssp HHHHCCTTHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999984419999999297988999999
No 19
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=31.88 E-value=14 Score=16.03 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 99999999999997599989997205
Q gi|254781141|r 99 RENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 99 ~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
+..+-.+...+|..+||++.+|..|.
T Consensus 25 a~~lg~~W~~la~~Lgl~~~~I~~I~ 50 (110)
T 1wxp_A 25 ANKLGEQWKILAPYLEMKDSEIRQIE 50 (110)
T ss_dssp HHHHTTTHHHHTTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99997769999999093999999999
No 20
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=30.26 E-value=24 Score=14.51 Aligned_cols=42 Identities=7% Similarity=-0.069 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCH
Q ss_conf 9999999958365898999999999999999759998999720599
Q gi|254781141|r 81 AENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDH 126 (196)
Q Consensus 81 ~e~~~L~e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~ 126 (196)
.+.+..+..||-|- +...+.++-.|+...|++.=.+.-++.+
T Consensus 7 ~EAe~~LkkIP~FV----R~k~r~~~E~~Are~G~~~IT~ev~~~A 48 (62)
T 2l09_A 7 SEAKTKLKNIPFFA----RSQAKARIEQLARQAEQDIVTPELVEQA 48 (62)
T ss_dssp HHHHHHHHTSCGGG----HHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHCCHHH----HHHHHHHHHHHHHHCCCCEECHHHHHHH
T ss_conf 99999988099988----9999999999999959997669999999
No 21
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.08 E-value=12 Score=16.61 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 999999999999997599989997205
Q gi|254781141|r 98 QRENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 98 k~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
.+..+..+...+|..+|||+.+|..|.
T Consensus 30 ia~~lg~~Wk~La~~LGls~~~I~~I~ 56 (114)
T 2of5_A 30 LAQRLGPEWEPMVLSLGLSQTDIYRCK 56 (114)
T ss_dssp HHHTCCSTHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999982519999999194999999999
No 22
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3itc_A* 3k5x_A*
Probab=29.70 E-value=25 Score=14.44 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 836-589899999999999999975999899972059999999999999999974
Q gi|254781141|r 90 FPQ-TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQK 143 (196)
Q Consensus 90 iPe-~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~~~~ 143 (196)
.|+ |.|.. ..-+|...+...|||+++|..|.--..+.|+..+-.|.+...
T Consensus 327 ~p~gl~~~~----~~p~l~~~L~~rGyse~~I~kI~ggN~lRvl~~ve~~a~~~~ 377 (400)
T 3id7_A 327 TPDGLGDVS----GYPNLIAELLDRGWSQSDLAKLTWKNAVRVLDAAEDVSRGLR 377 (400)
T ss_dssp CCBTCSSTT----CHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987668887----899999999986999999999961619999999999999855
No 23
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=29.51 E-value=25 Score=14.42 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 999999999999759998999720599999999999999
Q gi|254781141|r 100 ENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIG 138 (196)
Q Consensus 100 ~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y 138 (196)
+.-+.+++..+..|||+.+++-.++ +-+..|-.-..+
T Consensus 11 E~Kk~eL~~Lv~kyGf~h~kvi~~S--QELD~LIN~~m~ 47 (64)
T 2c0s_A 11 EAKKKELIYLVEKYGFTHHKVISFS--QELDRLLNLLIE 47 (64)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHH
T ss_conf 9999999999999789947999987--999999999999
No 24
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=29.30 E-value=25 Score=14.40 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 8365898999999-9999999997599989997205
Q gi|254781141|r 90 FPQTKDPAQRENF-FKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 90 iPe~~D~~k~~~~-~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
||...-.+....+ ..+.+..|..+||+..+|..+.
T Consensus 7 lp~~~r~~l~~~Ldg~dWr~LA~~Lgl~~~~I~~i~ 42 (85)
T 1ngr_A 7 LPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFT 42 (85)
T ss_dssp SCSTTTHHHHHHSCTTHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 999999999988377768999989398999999884
No 25
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=29.22 E-value=25 Score=14.39 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 99999999999997599989997205
Q gi|254781141|r 99 RENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 99 ~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
++.+..+....|..+||++.+|..|.
T Consensus 25 a~~lG~~W~~La~~Lgl~~~~I~~I~ 50 (111)
T 2yqf_A 25 SEHLGLSWAELARELQFSVEDINRIR 50 (111)
T ss_dssp HHHHTTTHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99986679999999294999999999
No 26
>2ou3_A Tellurite resistance protein of COG3793; ZP_00109916.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE I3A; 1.85A {Nostoc punctiforme pcc 73102} SCOP: a.287.1.1
Probab=29.18 E-value=17 Score=15.60 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCH
Q ss_conf 5898999999999999999759998999720599
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDH 126 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~ 126 (196)
++|-.....+..-|..++..+|++++++..+.+.
T Consensus 106 ~ADG~~~~~E~~~l~~ia~~Lgi~~~~~~~i~~~ 139 (161)
T 2ou3_A 106 AADGELHEKEKAKIRKMATILGIKEEIVDQLEQL 139 (161)
T ss_dssp HTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9389999999999999999949999999999999
No 27
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=28.86 E-value=26 Score=14.35 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH
Q ss_conf 99999999999975999899972059999999
Q gi|254781141|r 100 ENFFKNLFRIGNILGFQKEEMVDITDHRLLSL 131 (196)
Q Consensus 100 ~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~v 131 (196)
+.-+.++...+..|||+.+++-.++ +-+.-
T Consensus 11 E~Kk~eL~~Lv~kyGf~h~kvi~~S--QELD~ 40 (62)
T 2bzb_A 11 ENKKKELIQLVARHGLDHDKVLLFS--RDLDK 40 (62)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH--HHHHH
T ss_conf 9999999999999789947999987--99999
No 28
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.46 E-value=16 Score=15.78 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 9999999999997599989997205
Q gi|254781141|r 100 ENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 100 ~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
..+..+...+|..+|||+.+|..|.
T Consensus 21 ~~lg~dWk~Lar~LGls~~~I~~I~ 45 (118)
T 2of5_H 21 GRLGLDWPAVALHLGVSYREVQRIR 45 (118)
T ss_dssp HTCCTTHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9996649999999295999999999
No 29
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A
Probab=26.04 E-value=16 Score=15.79 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 99999999997599989997205
Q gi|254781141|r 102 FFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 102 ~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
+..+...+|..+||++.+|..|.
T Consensus 16 lg~~Wk~Lar~Lgls~~~I~~i~ 38 (122)
T 3ezq_B 16 VGKDWRRLARQLKVSDTKIDSIE 38 (122)
T ss_dssp CCTTHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 82749999999298999999999
No 30
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=25.73 E-value=29 Score=13.98 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999759998999720
Q gi|254781141|r 105 NLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 105 ~i~~~~~~~Gfs~eEi~~v 123 (196)
.+..|+...|||+++|..+
T Consensus 272 s~e~YL~~~Gls~~~i~~L 290 (296)
T 1ywf_A 272 SLGGYLRDAGISQATVNRM 290 (296)
T ss_dssp SHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHH
T ss_conf 9999998869999999999
No 31
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=24.74 E-value=23 Score=14.63 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=7.5
Q ss_pred CCCCHHHHHHHCCHHHHHH
Q ss_conf 5999899972059999999
Q gi|254781141|r 113 LGFQKEEMVDITDHRLLSL 131 (196)
Q Consensus 113 ~Gfs~eEi~~v~D~R~i~v 131 (196)
-|||+++|..|.--..+.+
T Consensus 289 rg~se~~i~ki~g~N~lRv 307 (318)
T 3neh_A 289 KHYTKEEIEGFASRNFLNH 307 (318)
T ss_dssp TTSCHHHHHHHHTHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 2899999999998999999
No 32
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=24.61 E-value=30 Score=13.88 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCCHHHHHHHC
Q ss_conf 99999997599989997205
Q gi|254781141|r 105 NLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 105 ~i~~~~~~~Gfs~eEi~~v~ 124 (196)
+...+|..+|||+.+|..|.
T Consensus 27 ~Wk~Lar~LGls~~~I~~I~ 46 (112)
T 1ich_A 27 RWKEFVKRLGLSDHEIDRLE 46 (112)
T ss_dssp THHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 89999999097999999999
No 33
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein structure initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Probab=23.68 E-value=32 Score=13.73 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 898999999999999999759998
Q gi|254781141|r 94 KDPAQRENFFKNLFRIGNILGFQK 117 (196)
Q Consensus 94 ~D~~k~~~~~~~i~~~~~~~Gfs~ 117 (196)
.||+.+..|..+|..++..+||.-
T Consensus 91 ~~~~~R~~fi~~i~~~~~~~~fDG 114 (319)
T 3cz8_A 91 NNPTARTNLVNNIYDLVSTRGYGG 114 (319)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899999999999999999809983
No 34
>2vjq_A Formyl-coenzyme A transferase; cytoplasm, class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Probab=23.27 E-value=15 Score=15.81 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH--CCCCHHHHHH
Q ss_conf 58989999999999999997--5999899972
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNI--LGFQKEEMVD 122 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~--~Gfs~eEi~~ 122 (196)
|.+.+.+.....++...... ...|-+|+..
T Consensus 307 ~~~~~~r~~~~~~l~~~i~~~~~~~t~~e~~~ 338 (428)
T 2vjq_A 307 YNTFEGRVDKLMDIFSFIETKFADKDKFEVTE 338 (428)
T ss_dssp TSSHHHHTTTHHHHHHHHHHTTTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 05435521246787543455531478999998
No 35
>3ezq_A Tumor necrosis factor receptor superfamily member 6; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1ddf_A
Probab=22.17 E-value=34 Score=13.54 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 9999999975999899972059
Q gi|254781141|r 104 KNLFRIGNILGFQKEEMVDITD 125 (196)
Q Consensus 104 ~~i~~~~~~~Gfs~eEi~~v~D 125 (196)
.++..+|..+|||+.+|..|..
T Consensus 21 ~dwk~l~r~LGls~~~I~~I~~ 42 (115)
T 3ezq_A 21 SQVKGFVRKNGVNEAKIDEIKN 42 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9899999993989999999998
No 36
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=20.96 E-value=21 Score=14.94 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHH
Q ss_conf 9583658989999999999999997599989997205999999
Q gi|254781141|r 88 HLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLS 130 (196)
Q Consensus 88 e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~ 130 (196)
+..|...+..-..-+.+.++..+...||+...|..+.--++-.
T Consensus 12 e~~p~~~~~~dd~~m~spvV~~AleMGF~~~~Ir~~v~rk~~~ 54 (104)
T 2kna_A 12 EKTPSLTRRIDDTIFQNPMVQEAIRMGFSFKDIKKIMEEKIQI 54 (104)
T ss_dssp CSCSCCCSCCCHHHHHCTHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 1388751578899980899999999189899999999999998
No 37
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=20.37 E-value=37 Score=13.29 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999958365898999999999999999759998999720
Q gi|254781141|r 81 AENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 81 ~e~~~L~e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v 123 (196)
.+...++...|..=.-. .+.....+..+..++|||.+||..+
T Consensus 127 ~~~~~ll~~~P~lL~~s-~~~~~~~~~~~~~~lG~s~e~i~~~ 168 (270)
T 3m66_A 127 KKTRDLVVRLPRLLTGS-LEPVKENMKVYRLELGFKHNEIQHM 168 (270)
T ss_dssp HHHHHHHHHSGGGGTSC-SHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 89999999739882468-9999999999999849999999999
Done!