Query gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 196
No_of_seqs 124 out of 155
Neff 6.0
Searched_HMMs 13730
Date Wed Jun 1 11:45:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781141.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b4ua_ a.88.1.1 (A:) LigA sub 69.7 1.4 0.0001 21.2 2.6 42 93-134 37-78 (132)
2 d1itua_ c.1.9.7 (A:) Renal dip 53.8 6.1 0.00044 16.9 5.2 47 90-140 295-342 (369)
3 d2fcwa1 a.13.1.1 (A:216-320) a 47.7 7.5 0.00055 16.3 3.6 35 92-131 2-42 (105)
4 d1fada_ a.77.1.2 (A:) FADD (Mo 46.1 8 0.00058 16.1 4.3 27 98-124 16-42 (95)
5 d1ddfa_ a.77.1.2 (A:) Fas {Hum 36.3 11 0.0008 15.2 2.5 27 98-124 20-47 (127)
6 d1q7ea_ c.123.1.1 (A:) Hypothe 35.6 10 0.00074 15.4 2.3 31 91-121 293-325 (417)
7 d1i5pa3 f.1.3.1 (A:1-263) delt 32.6 13 0.00093 14.8 4.3 49 78-126 149-211 (263)
8 d1ywfa1 c.45.1.5 (A:4-275) Pho 31.7 12 0.0009 14.8 2.2 21 103-123 247-267 (272)
9 d1b43a1 a.60.7.1 (A:220-339) F 31.3 11 0.00083 15.1 1.9 29 90-123 69-98 (120)
10 d2gf5a1 a.77.1.2 (A:89-191) FA 27.5 9.5 0.00069 15.6 1.0 20 105-124 23-42 (103)
11 d1knca_ a.152.1.1 (A:) Antioxi 26.6 16 0.0012 14.1 2.5 31 84-119 3-33 (174)
12 d1icha_ a.77.1.2 (A:) Tumor ne 25.0 17 0.0012 14.0 1.9 20 105-124 15-34 (87)
13 d2ou3a1 a.287.1.1 (A:1-160) Te 23.9 9.5 0.00069 15.6 0.4 35 92-126 104-138 (160)
14 d2c0sa1 a.30.7.1 (A:1-57) Hypo 23.3 19 0.0013 13.7 2.9 39 100-140 11-49 (57)
15 d1goia2 c.1.8.5 (A:3-291,A:380 22.7 19 0.0014 13.6 3.3 28 93-120 112-139 (356)
16 d1itxa1 c.1.8.5 (A:33-337,A:41 21.7 20 0.0014 13.5 3.2 29 93-121 142-170 (347)
17 d1ngra_ a.77.1.2 (A:) p75 low 21.7 19 0.0014 13.6 1.7 22 103-124 21-42 (85)
No 1
>d1b4ua_ a.88.1.1 (A:) LigA subunit of an aromatic-ring-opening dioxygenase LigAB {Sphingomonas paucimobilis, formerly Pseudomonas paucimobilis [TaxId: 13689]}
Probab=69.67 E-value=1.4 Score=21.15 Aligned_cols=42 Identities=7% Similarity=-0.021 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 589899999999999999975999899972059999999999
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYY 134 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~ 134 (196)
+..|+-++.|..+-..|+..+|.|++|...|.+-..+.+++-
T Consensus 37 L~~~e~R~~F~aDe~Ayl~~~~LTeEek~Av~~rD~~~Li~l 78 (132)
T d1b4ua_ 37 LMKAENRERFKADESAYLDEWNLTPAAKAAVLARDYNAMIDE 78 (132)
T ss_dssp TTSHHHHHHHHHCHHHHHHTTTCCHHHHHHHHHTCHHHHHHT
T ss_pred HCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 857999999980999998727999999999983019999994
No 2
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.75 E-value=6.1 Score=16.92 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=37.5
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 836-589899999999999999975999899972059999999999999999
Q gi|254781141|r 90 FPQ-TKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQ 140 (196)
Q Consensus 90 iPe-~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~ 140 (196)
.|+ |.|.. ..-+|...+...|||+++|..|.--..+.|++..+++..
T Consensus 295 ~p~gl~~~~----~~p~l~~~L~~rG~se~~i~ki~g~N~lRv~~~v~~~~~ 342 (369)
T d1itua_ 295 VPEGLEDVS----KYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASN 342 (369)
T ss_dssp CCBTCSSTT----CHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987777877----889999999986999999999998869999999999998
No 3
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.70 E-value=7.5 Score=16.30 Aligned_cols=35 Identities=9% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH------CCHHHHHH
Q ss_conf 65898999999999999999759998999720------59999999
Q gi|254781141|r 92 QTKDPAQRENFFKNLFRIGNILGFQKEEMVDI------TDHRLLSL 131 (196)
Q Consensus 92 e~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v------~D~R~i~v 131 (196)
||..|.+ .++-..|..-+||++|+.++ |.+|..++
T Consensus 2 EF~EPkV-----q~LW~~A~~~nFt~~EL~SlkeEL~HfE~rl~K~ 42 (105)
T d2fcwa1 2 EFEEPRV-----IDLWDLAQSANLTDKELEAFREELKHFEAKIEKH 42 (105)
T ss_dssp SCCSHHH-----HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHH-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8641678-----9999999985999899999999999999999999
No 4
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.09 E-value=8 Score=16.14 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 999999999999997599989997205
Q gi|254781141|r 98 QRENFFKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 98 k~~~~~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
.+..+..+...+|..+|||+.+|..|.
T Consensus 16 ia~~lg~~Wk~Lar~Lgls~~~I~~I~ 42 (95)
T d1fada_ 16 VCDNVGRDWKRLARELKVSEAKMDGIE 42 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999987849999989097999999999
No 5
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.34 E-value=11 Score=15.21 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=21.7
Q ss_pred HHHHHH-HHHHHHHHHCCCCHHHHHHHC
Q ss_conf 999999-999999997599989997205
Q gi|254781141|r 98 QRENFF-KNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 98 k~~~~~-~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
.+..+. .++..+|..+|||+.+|..|.
T Consensus 20 ia~~l~~~dwk~lar~LGls~~~I~~I~ 47 (127)
T d1ddfa_ 20 IAGVMTLSQVKGFVRKNGVNEAKIDEIK 47 (127)
T ss_dssp HHHHSCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9987798899999999499999999999
No 6
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}
Probab=35.58 E-value=10 Score=15.42 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHH--HCCCCHHHHH
Q ss_conf 365898999999999999999--7599989997
Q gi|254781141|r 91 PQTKDPAQRENFFKNLFRIGN--ILGFQKEEMV 121 (196)
Q Consensus 91 Pe~~D~~k~~~~~~~i~~~~~--~~Gfs~eEi~ 121 (196)
|.|.++..+.....++..-.. -...|.+|+.
T Consensus 293 ~~~~~~~~r~~~~~~l~~~i~~~~~~~t~~e~~ 325 (417)
T d1q7ea_ 293 PAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAV 325 (417)
T ss_dssp TTTSSHHHHGGGHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHE
T ss_conf 200000012211999987776521133310110
No 7
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
Probab=32.58 E-value=13 Score=14.76 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHHHHHHCCCCHHHHHHHCCH
Q ss_conf 99999999999583658989999--------------99999999999759998999720599
Q gi|254781141|r 78 KLIAENQQLEHLFPQTKDPAQRE--------------NFFKNLFRIGNILGFQKEEMVDITDH 126 (196)
Q Consensus 78 ~l~~e~~~L~e~iPe~~D~~k~~--------------~~~~~i~~~~~~~Gfs~eEi~~v~D~ 126 (196)
....=...+...||.|+.+.--- .+..+...||..+||++.+|++.++.
T Consensus 149 ~f~~l~~~f~~~ip~F~~~~ye~~lLp~YaqaAnLHLlLLrD~i~yg~~Wg~s~~~i~~y~~~ 211 (263)
T d1i5pa3 149 SVNTMQQLFLNRLPQFQIQGYQLLLLPLFAQAANMHLSFIRDVILNADEWGISAATLRTYRDY 211 (263)
T ss_dssp HHHHHHHHHHHHGGGGSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999998898724883242499999999999999999999998639988899999999
No 8
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.75 E-value=12 Score=14.84 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999999759998999720
Q gi|254781141|r 103 FKNLFRIGNILGFQKEEMVDI 123 (196)
Q Consensus 103 ~~~i~~~~~~~Gfs~eEi~~v 123 (196)
+..+..|+.+.|||++++..+
T Consensus 247 yGs~~~YL~~~Gl~~~~i~~L 267 (272)
T d1ywfa1 247 YGSLGGYLRDAGISQATVNRM 267 (272)
T ss_dssp HSSHHHHHHHTTCCHHHHHHH
T ss_pred HCCHHHHHHHCCCCHHHHHHH
T ss_conf 099999998869999999999
No 9
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.26 E-value=11 Score=15.10 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHH
Q ss_conf 8365898999999999999999-759998999720
Q gi|254781141|r 90 FPQTKDPAQRENFFKNLFRIGN-ILGFQKEEMVDI 123 (196)
Q Consensus 90 iPe~~D~~k~~~~~~~i~~~~~-~~Gfs~eEi~~v 123 (196)
-++|+.| -...|++|+. ..|||++.|..+
T Consensus 69 ~~~~~~p-----d~~~l~~fL~~e~~f~~~rv~~~ 98 (120)
T d1b43a1 69 NLVWRDP-----DEEGILKFLCDEHDFSEERVKNG 98 (120)
T ss_dssp CCCCCCC-----CHHHHHHHHTTTTCCCHHHHHHH
T ss_pred CCCCCCC-----CHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8677999-----98999999998129899999999
No 10
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.51 E-value=9.5 Score=15.63 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.5
Q ss_pred HHHHHHHHCCCCHHHHHHHC
Q ss_conf 99999997599989997205
Q gi|254781141|r 105 NLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 105 ~i~~~~~~~Gfs~eEi~~v~ 124 (196)
+...+|..+|||+.+|..|.
T Consensus 23 ~W~~La~~Lgl~~~~I~~I~ 42 (103)
T d2gf5a1 23 DWRRLARQLKVSDTKIDSIE 42 (103)
T ss_dssp THHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 39999999298999999999
No 11
>d1knca_ a.152.1.1 (A:) Antioxidant defense protein AhpD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.65 E-value=16 Score=14.09 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=15.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999995836589899999999999999975999899
Q gi|254781141|r 84 QQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEE 119 (196)
Q Consensus 84 ~~L~e~iPe~~D~~k~~~~~~~i~~~~~~~Gfs~eE 119 (196)
+.|.+.||||.-+ ++-++.....+-+.++++
T Consensus 3 e~lk~~lP~yakD-----lkLNl~~~~~~~~L~~~~ 33 (174)
T d1knca_ 3 EKLKAALPEYAKD-----IKLNLSSITRSSVLDQEQ 33 (174)
T ss_dssp HHHHHHSCGGGHH-----HHHHHHHHTTCSSSCHHH
T ss_pred HHHHHHCHHHHHH-----HHHHHHHCCCCCCCCHHH
T ss_conf 8897768388999-----998898511435899999
No 12
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=17 Score=13.96 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCHHHHHHHC
Q ss_conf 99999997599989997205
Q gi|254781141|r 105 NLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 105 ~i~~~~~~~Gfs~eEi~~v~ 124 (196)
+...+|..+|||+.+|..|.
T Consensus 15 ~Wk~lar~LGls~~~i~~I~ 34 (87)
T d1icha_ 15 RWKEFVKRLGLSDHEIDRLE 34 (87)
T ss_dssp THHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH
T ss_conf 89999999194999999999
No 13
>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}
Probab=23.85 E-value=9.5 Score=15.63 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCH
Q ss_conf 65898999999999999999759998999720599
Q gi|254781141|r 92 QTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDH 126 (196)
Q Consensus 92 e~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~~v~D~ 126 (196)
-+.|-.....+..-|+..+..+|++++++..+.|.
T Consensus 104 a~aDG~~~~~E~~~l~~ia~~Lgi~~~~~~~l~~~ 138 (160)
T d2ou3a1 104 SAADGELHEKEKAKIRKMATILGIKEEIVDQLEQL 138 (160)
T ss_dssp HHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 98089899999999999999949999999999999
No 14
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=23.26 E-value=19 Score=13.68 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999975999899972059999999999999999
Q gi|254781141|r 100 ENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQ 140 (196)
Q Consensus 100 ~~~~~~i~~~~~~~Gfs~eEi~~v~D~R~i~vl~~Am~y~~ 140 (196)
+.-+.++..+...|||+.+.+-.. ++-+..|-.-..+-+
T Consensus 11 E~KK~eLi~Lv~~YGf~h~kvl~~--SQELD~LIN~~m~~k 49 (57)
T d2c0sa1 11 EAKKKELIYLVEKYGFTHHKVISF--SQELDRLLNLLIELK 49 (57)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 999999999999978982689987--799999999999884
No 15
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}
Probab=22.74 E-value=19 Score=13.61 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 5898999999999999999759998999
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEM 120 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi 120 (196)
.+|++.+.+|..++..++..+||.-=+|
T Consensus 112 ~~~~~~R~~Fi~siv~~l~~ygfDGIDI 139 (356)
T d1goia2 112 VKTPASRAKFAQSCVRIMKDYGFDGVNI 139 (356)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 5899999999999999999829982446
No 16
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
Probab=21.69 E-value=20 Score=13.47 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 58989999999999999997599989997
Q gi|254781141|r 93 TKDPAQRENFFKNLFRIGNILGFQKEEMV 121 (196)
Q Consensus 93 ~~D~~k~~~~~~~i~~~~~~~Gfs~eEi~ 121 (196)
.+|++.++.|..+|+.+...+||.-=+|.
T Consensus 142 ~~~~~~R~~Fi~siv~~l~~~~fDGIDiD 170 (347)
T d1itxa1 142 AATAATREVFANSAVDFLRKYNFDGVDLD 170 (347)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 33888999999999999998389807874
No 17
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.66 E-value=19 Score=13.57 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 9999999997599989997205
Q gi|254781141|r 103 FKNLFRIGNILGFQKEEMVDIT 124 (196)
Q Consensus 103 ~~~i~~~~~~~Gfs~eEi~~v~ 124 (196)
..+.+..|..+||+..+|..+.
T Consensus 21 g~dWr~LA~~LGl~~~~I~~i~ 42 (85)
T d1ngra_ 21 GDTWRHLAGELGYQPEHIDSFT 42 (85)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHH
T ss_conf 7879999989397999998987
Done!