BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781141|ref|YP_003065554.1| hypothetical protein
CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
(196 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040818|gb|ACT57614.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 196
Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG
Sbjct: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM
Sbjct: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKAIQK 180
VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKAIQK
Sbjct: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKAIQK 180
Query: 181 LYQTGSLYDSLEIDFV 196
LYQTGSLYDSLEIDFV
Sbjct: 181 LYQTGSLYDSLEIDFV 196
>gi|315122534|ref|YP_004063023.1| hypothetical protein CKC_03930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495936|gb|ADR52535.1| hypothetical protein CKC_03930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 328
Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/198 (65%), Positives = 160/198 (80%), Gaps = 2/198 (1%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
+Q QAKILA SA++LAQLINHH+P D P+L +T P Y I LRQ+ALNIINHFVE G
Sbjct: 131 VQKQAKILAHSADSLAQLINHHMPADPHPSLAQTDPSAYQNIINLRQQALNIINHFVEEG 190
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
R PD IAKELD+E +E KL EN+QLE++FPQTKDPAQRE+FF+N+F+IG +GFQ+EEM
Sbjct: 191 RYPDKIAKELDAEHVEIKLKNENEQLENIFPQTKDPAQRESFFQNIFKIGKKIGFQEEEM 250
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAK--NHRRITSQEKAI 178
+I DHRLL LA+YAQ+GLQSQK+SED Y KIRHKP + N+ K NH RITSQ++AI
Sbjct: 251 KNIIDHRLLVLAHYAQLGLQSQKISEDVYRKIRHKPSGSSVPNRKKSCNHHRITSQQRAI 310
Query: 179 QKLYQTGSLYDSLEIDFV 196
QKL ++GS YD+L+IDFV
Sbjct: 311 QKLQKSGSFYDALDIDFV 328
>gi|227822442|ref|YP_002826414.1| hypothetical protein NGR_c18970 [Sinorhizobium fredii NGR234]
gi|227341443|gb|ACP25661.1| hypothetical protein NGR_c18970 [Sinorhizobium fredii NGR234]
Length = 317
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 3/197 (1%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
+++ + +A +A A+A+LI+ IP D L PETY R L Q L + + G
Sbjct: 121 LESMSSRVAVTANAVAELISAQIPPDPPEELRLHDPETYQRQWALHQAGLKQLLRVMALG 180
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
P IA L E++L+ EN +L FPQT R+ FF + F LGF EE+
Sbjct: 181 EEPAGIAGALQDAASEERLVGENAKLLEAFPQTGQDEGRQAFFADAFEAARELGFTDEEI 240
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN--HRRITSQEKAI 178
++ DHRL LA+YA++GL +++ A K+ P T KAKN R+ +A+
Sbjct: 241 REVVDHRLFKLAHYARLGLLAKRARAKALQKVAVAPAAAPRT-KAKNQAQRQQRESREAM 299
Query: 179 QKLYQTGSLYDSLEIDF 195
++L ++GS+ D++ +DF
Sbjct: 300 RRLARSGSIRDAMAVDF 316
>gi|150397034|ref|YP_001327501.1| hypothetical protein Smed_1831 [Sinorhizobium medicae WSM419]
gi|150028549|gb|ABR60666.1| hypothetical protein Smed_1831 [Sinorhizobium medicae WSM419]
Length = 322
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 1/189 (0%)
Query: 8 LAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIA 67
+A +A A+A+ + +P + + L P Y R + + AL + ++ P +
Sbjct: 133 VATTANAIAEFLIQQLPAEPTRMLAIQNPAEYTRQKSVYDGALEQVQRLIDVSAEPKRVG 192
Query: 68 KELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127
EL ++ L AEN +L FP+ RE FF F+ G GF ++EM TDHR
Sbjct: 193 DELKQAATQETLAAENAKLLEAFPRLAREDARERFFAEAFKAGEDFGFSQDEMQGFTDHR 252
Query: 128 LLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTN-KAKNHRRITSQEKAIQKLYQTGS 186
+ +YA +G ++++ A K+ + P + K + + + A+++L +TGS
Sbjct: 253 YFKVMHYAMLGFRAEQAKSKALTKVANAPPATAKSKPKGPANPQARKNQDAMKRLAKTGS 312
Query: 187 LYDSLEIDF 195
+ D+L IDF
Sbjct: 313 IKDALLIDF 321
>gi|316973122|gb|EFV56749.1| putative von Willebrand factor type D domain protein [Trichinella
spiralis]
Length = 1122
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 41 RIRYLRQKALNIINHFVETGRNPDN-------IAKELDSEILEKKLIAENQQLEHLFPQ- 92
R R LR+ L + +F GR+ D +AK+ SE+ KL+ ++++ HL Q
Sbjct: 64 RSRLLRESLLKELEYFRNLGRDYDKQRAEQMEMAKKYRSEVESAKLLRKHREQCHLMAQL 123
Query: 93 -TKDPAQRENFFKNLFRIG 110
+ P + E +KNL++ G
Sbjct: 124 INQYPTREEKEWKNLYQYG 142
>gi|332291500|ref|YP_004430109.1| 2-oxoglutarate dehydrogenase, E1 subunit [Krokinobacter diaphorus
4H-3-7-5]
gi|332169586|gb|AEE18841.1| 2-oxoglutarate dehydrogenase, E1 subunit [Krokinobacter diaphorus
4H-3-7-5]
Length = 938
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 58 ETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNL----------- 106
++G P I + + E KLI + HLF +T +R + L
Sbjct: 76 DSGTTPAAIPEAIQKEFQIVKLIDAYRNRGHLFTKTNPVRERRKYAPTLEIENFGLSQAD 135
Query: 107 ----FRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHK---PFVN 159
F G+ILG + + +I +H L Y IG++ Y IR+ ++
Sbjct: 136 MTLQFEAGSILGLGRTSLREIVNH--LEAIYCDHIGIE--------YMYIRNPEEIAWIQ 185
Query: 160 ITTNKAKNHRRITSQEKA--IQKLYQTGSLYDSLEIDFV 196
NK NH +++EK ++KL QT S L +V
Sbjct: 186 NWLNKNDNHPEFSAEEKKHILKKLNQTASFEGFLHSKYV 224
>gi|303275620|ref|XP_003057104.1| flagellar inner arm heavy dynein chain [Micromonas pusilla CCMP1545]
gi|226461456|gb|EEH58749.1| flagellar inner arm heavy dynein chain [Micromonas pusilla CCMP1545]
Length = 4323
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 64 DNIAKELDSEILEKKLIA-------ENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQ 116
D + K L SE LE K +A N +L + +TKDP + + F K +F N+L FQ
Sbjct: 1299 DEVNKGL-SEYLETKRLAFPRFYFLSNDELLEILSETKDPLRVQPFLKKVFEAINLLEFQ 1357
Query: 117 K 117
K
Sbjct: 1358 K 1358
>gi|115624707|ref|XP_001203566.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115633855|ref|XP_001199961.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 359
Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 25 DDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQ 84
DD S ++ +T+P T R+R + T R PDNI + L E L K++ EN+
Sbjct: 182 DDESKSMRETFPPTTRRVRKTPSPGIQPGQRAFPTDRIPDNI-RFLHGEELCKEVAKENE 240
Query: 85 QLEHLFPQTK 94
L P K
Sbjct: 241 FLRKATPPPK 250
>gi|332828553|gb|EGK01253.1| hypothetical protein HMPREF9455_02445 [Dysgonomonas gadei ATCC
BAA-286]
Length = 759
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 8 LAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGR 61
L A L L N PD S ++K YPE Y IR LN I++F+E R
Sbjct: 580 LPNRAAILDTLTNAVYPDKSEEAIKKMYPEDYRIIRDEIYPNLNRIDYFIELCR 633
>gi|301629922|ref|XP_002944081.1| PREDICTED: piggyBac transposable element-derived protein 4-like
[Xenopus (Silurana) tropicalis]
Length = 385
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 26 DSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRN--PDNIAKELDSEILEKK--LIA 81
++SP L K P R +N++ F++ GRN DN L +L+ K L+
Sbjct: 120 NASPYLGKD-PSRQKGERLAENVVMNLMEPFLDEGRNVTTDNFFTSLSHRLLQHKTTLLG 178
Query: 82 ENQQLEHLFPQ-TKDPAQRENFFKNLFRIGNI 112
++ PQ KD AQRE F ++ R G++
Sbjct: 179 TVNKVRRELPQLAKDTAQREVFSTSVLRSGSV 210
>gi|154248928|ref|YP_001409753.1| UDP-N-acetylglucosamine 2-epimerase [Fervidobacterium nodosum
Rt17-B1]
gi|154152864|gb|ABS60096.1| UDP-N-acetylglucosamine 2-epimerase [Fervidobacterium nodosum
Rt17-B1]
Length = 355
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 45 LRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFK 104
+R+K +N N+FV T +NI + + + + + +E Q +E +FP K+P RE +
Sbjct: 188 IRKKIINHTNYFVVTLHRRENIGQRMRNILRAIRKFSEEQNIEFVFPVHKNPKVREIVYS 247
Query: 105 NL 106
L
Sbjct: 248 EL 249
>gi|148377320|ref|YP_001256196.1| putative deoxyribonuclease (YabD) deoxyribonuclease (TatD)
[Mycoplasma agalactiae PG2]
gi|148291366|emb|CAL58749.1| Conserved Hypothetical protein Putativedeoxyribonuclease (YabD)
Deoxyribonuclease (TatD) [Mycoplasma agalactiae PG2]
Length = 253
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 48 KALNIINHFVET----GRNPDNIAKELDSEILE----KKLIAENQ-QLEHLFPQTKDPAQ 98
+ LNI +HF T G +P+N +D EI+E K ++A + L++ +P TK Q
Sbjct: 47 EVLNICSHFDYTFPVIGVHPNNSTGAIDGEIVESQLTKDVVAIGEIGLDYHYPDTKKDVQ 106
Query: 99 RENF 102
+E+F
Sbjct: 107 KESF 110
Searching..................................................done
Results from round 2
>gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040818|gb|ACT57614.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 196
Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats.
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG
Sbjct: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM
Sbjct: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKAIQK 180
VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKAIQK
Sbjct: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKAIQK 180
Query: 181 LYQTGSLYDSLEIDFV 196
LYQTGSLYDSLEIDFV
Sbjct: 181 LYQTGSLYDSLEIDFV 196
>gi|315122534|ref|YP_004063023.1| hypothetical protein CKC_03930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495936|gb|ADR52535.1| hypothetical protein CKC_03930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 328
Score = 270 bits (689), Expect = 9e-71, Method: Composition-based stats.
Identities = 130/198 (65%), Positives = 160/198 (80%), Gaps = 2/198 (1%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
+Q QAKILA SA++LAQLINHH+P D P+L +T P Y I LRQ+ALNIINHFVE G
Sbjct: 131 VQKQAKILAHSADSLAQLINHHMPADPHPSLAQTDPSAYQNIINLRQQALNIINHFVEEG 190
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
R PD IAKELD+E +E KL EN+QLE++FPQTKDPAQRE+FF+N+F+IG +GFQ+EEM
Sbjct: 191 RYPDKIAKELDAEHVEIKLKNENEQLENIFPQTKDPAQRESFFQNIFKIGKKIGFQEEEM 250
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAK--NHRRITSQEKAI 178
+I DHRLL LA+YAQ+GLQSQK+SED Y KIRHKP + N+ K NH RITSQ++AI
Sbjct: 251 KNIIDHRLLVLAHYAQLGLQSQKISEDVYRKIRHKPSGSSVPNRKKSCNHHRITSQQRAI 310
Query: 179 QKLYQTGSLYDSLEIDFV 196
QKL ++GS YD+L+IDFV
Sbjct: 311 QKLQKSGSFYDALDIDFV 328
>gi|150397034|ref|YP_001327501.1| hypothetical protein Smed_1831 [Sinorhizobium medicae WSM419]
gi|150028549|gb|ABR60666.1| hypothetical protein Smed_1831 [Sinorhizobium medicae WSM419]
Length = 322
Score = 251 bits (640), Expect = 5e-65, Method: Composition-based stats.
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
++ +A +A A+A+ + +P + + L P Y R + + AL + ++
Sbjct: 126 LETMTTRVATTANAIAEFLIQQLPAEPTRMLAIQNPAEYTRQKSVYDGALEQVQRLIDVS 185
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
P + EL ++ L AEN +L FP+ RE FF F+ G GF ++EM
Sbjct: 186 AEPKRVGDELKQAATQETLAAENAKLLEAFPRLAREDARERFFAEAFKAGEDFGFSQDEM 245
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTN-KAKNHRRITSQEKAIQ 179
TDHR + +YA +G ++++ A K+ + P + K + + + A++
Sbjct: 246 QGFTDHRYFKVMHYAMLGFRAEQAKSKALTKVANAPPATAKSKPKGPANPQARKNQDAMK 305
Query: 180 KLYQTGSLYDSLEIDF 195
+L +TGS+ D+L IDF
Sbjct: 306 RLAKTGSIKDALLIDF 321
>gi|227822442|ref|YP_002826414.1| hypothetical protein NGR_c18970 [Sinorhizobium fredii NGR234]
gi|227341443|gb|ACP25661.1| hypothetical protein NGR_c18970 [Sinorhizobium fredii NGR234]
Length = 317
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 1/196 (0%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
+++ + +A +A A+A+LI+ IP D L PETY R L Q L + + G
Sbjct: 121 LESMSSRVAVTANAVAELISAQIPPDPPEELRLHDPETYQRQWALHQAGLKQLLRVMALG 180
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
P IA L E++L+ EN +L FPQT R+ FF + F LGF EE+
Sbjct: 181 EEPAGIAGALQDAASEERLVGENAKLLEAFPQTGQDEGRQAFFADAFEAARELGFTDEEI 240
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTN-KAKNHRRITSQEKAIQ 179
++ DHRL LA+YA++GL +++ A K+ P T K + R+ +A++
Sbjct: 241 REVVDHRLFKLAHYARLGLLAKRARAKALQKVAVAPAAAPRTKAKNQAQRQQRESREAMR 300
Query: 180 KLYQTGSLYDSLEIDF 195
+L ++GS+ D++ +DF
Sbjct: 301 RLARSGSIRDAMAVDF 316
>gi|283856245|ref|YP_162118.2| hypothetical protein ZMO0383 [Zymomonas mobilis subsp. mobilis ZM4]
gi|283775240|gb|AAV89007.2| hypothetical protein ZMO0383 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 283
Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 11/190 (5%)
Query: 10 QSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKE 69
A+ LA+ P P L + P +Y + + V+ +
Sbjct: 87 HYADQLAKYAEAITPKKPDPQLLVSDPASYAAQLASYEDLTAKRDQIVQEVIQISRQNEM 146
Query: 70 LDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLL 129
+ E+Q+L L P+ D QR G LG+ + + + ++
Sbjct: 147 AELAARRAWAQGEHQRLISLLPEWGDDNQRPAILAAFEETGRHLGYPDHVLAEADSNDIM 206
Query: 130 SLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHR---------RITSQEKAIQK 180
+L + +S+K DA + + + T++ + +++ +
Sbjct: 207 ALKKAHEWRRKSEKW--DALQQGKAAAIKSAKTSRKTAVPGTSQPYGAAKSRKLNESLGQ 264
Query: 181 LYQTGSLYDS 190
L +TG + +
Sbjct: 265 LRETGDVRSA 274
>gi|241760936|ref|ZP_04759025.1| hypothetical protein ZmobDRAFT_0101 [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753096|ref|YP_003225989.1| hypothetical protein Za10_0859 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|241374555|gb|EER64016.1| hypothetical protein ZmobDRAFT_0101 [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552459|gb|ACV75405.1| hypothetical protein Za10_0859 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 283
Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 11/190 (5%)
Query: 10 QSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKE 69
A+ LA+ P P L + P +Y + + V+ +
Sbjct: 87 HYADQLAKYAEAITPKKPDPQLLVSDPASYAAQLASYEDLTAKRDQIVQEVIQISRQNEM 146
Query: 70 LDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLL 129
+ E+Q+L L P+ D QR G LG+ + + + ++
Sbjct: 147 AELAARRAWAQGEHQRLISLLPEWGDDNQRPAILAAFEETGRHLGYPDHVLAEADSNDIM 206
Query: 130 SLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHR---------RITSQEKAIQK 180
+L + +S+K DA + + + T++ + +++ +
Sbjct: 207 ALKKAHEWRRKSEKW--DALQQGKAAAIKSAKTSRKTAVPGTSQPYGAAKSRKLNESLGQ 264
Query: 181 LYQTGSLYDS 190
L +TG + +
Sbjct: 265 LRETGDVRSA 274
>gi|160897388|ref|YP_001562970.1| hypothetical protein Daci_1945 [Delftia acidovorans SPH-1]
gi|160362972|gb|ABX34585.1| hypothetical protein Daci_1945 [Delftia acidovorans SPH-1]
Length = 311
Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 1/163 (0%)
Query: 31 LEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLF 90
L P+ R ++L + + + + + ++ L ++QQL
Sbjct: 145 LIAENPQEALRQKHLMDQRQAQLQQVYAEQQRVAQAIQADQRQGYQRHLSEQHQQLVDKL 204
Query: 91 PQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYH 150
P+ KD A+ + + G+ + + + D R + +A A + Q ++ A
Sbjct: 205 PEWKDEARAKAESAAIRDYLLGQGYDTDAVNSVNDSRAVVIARKAMLYDQMISKTDAATK 264
Query: 151 KIRHKPFVNITTNKAKNHRRITSQEKAIQKLYQTGSLYDSLEI 193
K+ + P + + + A QKL +TG + D+ ++
Sbjct: 265 KVANLPTKVEQPGSG-ANPNLDRRTAAFQKLSKTGRVEDAAQV 306
>gi|307308933|ref|ZP_07588616.1| hypothetical protein SinmeBDRAFT_4500 [Sinorhizobium meliloti
BL225C]
gi|306900567|gb|EFN31180.1| hypothetical protein SinmeBDRAFT_4500 [Sinorhizobium meliloti
BL225C]
Length = 327
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 71/163 (43%), Gaps = 3/163 (1%)
Query: 31 LEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLF 90
L P Y R + ++++ +I ET + ++++ +++L + +
Sbjct: 163 LLNENPGEYVRQKEMQERRDSIARQLYETEMAMAQQREAQEAQLHQERLTESKTKFFETY 222
Query: 91 PQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYH 150
P+ +D A+ + + ++ F ++E+ +++D+R+L + Y + K+
Sbjct: 223 PELRDSARAKEAQVGMTQLLIDASFDQQELENLSDYRMLDILYRLWKAENTAKIVPQVVK 282
Query: 151 KIRHKPFVNITTNKAKNHRRITSQEKAIQKLYQTGSLYDSLEI 193
KP ++ K + + +EK K Q+G+L D+ +
Sbjct: 283 NFEQKPNISA---KEPSRKNFDHREKNWSKFKQSGNLDDAAAL 322
>gi|323452171|gb|EGB08046.1| hypothetical protein AURANDRAFT_71705 [Aureococcus anophagefferens]
Length = 2383
Score = 43.6 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 12/121 (9%)
Query: 58 ETGRNPDNIAKELDSEILEKK----LIAENQQLEHLFPQTKDPAQRENFFKNLFR----I 109
+ G P ++ S E + L+ E +LF P + F +F +
Sbjct: 216 DDGEKPPATTRDDGSASKEARHHASLVGERPPRYNLFDPEALPEALKRFAPEVFASSEAL 275
Query: 110 GNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHR 169
GN GFQ + + + +H L+ LA GL Q S + + N+R
Sbjct: 276 GNFFGFQDDNVRNQAEHALMLLAN----GLAQQPPSSRSARGCDVAALGALHAKLFANYR 331
Query: 170 R 170
R
Sbjct: 332 R 332
>gi|291334639|gb|ADD94287.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C64]
gi|291334837|gb|ADD94477.1| hypothetical protein [uncultured phage MedDCM-OCT-S06-C1041]
Length = 377
Score = 43.2 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 6/198 (3%)
Query: 2 QNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGR 61
+ A+ AQ + Q + + L+ T P+ + R + N I + +T
Sbjct: 169 EQSAQQNAQILNLVEQQLMTDFNNVPWDNLKTTDPQQWSIKRQEFTERQNAIQNIRQTAA 228
Query: 62 NPDN----IAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQK 117
K + ++ L E + L P KD R L G+
Sbjct: 229 QQYQQKLDAGKVEQQKQMQDLLQREQESLYRALPTFKDEETRNAEQVKLTNYLLTQGYSN 288
Query: 118 EEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKNHRRITSQEKA 177
+E+ + DHR L LA+ A ++ E A K+ + ++ ++ T A
Sbjct: 289 DELQTVYDHRTLVLAHKAMQFDSMKEKGETAKKKVAKIGKKVLKPGAKQSKKQQTIDADA 348
Query: 178 I--QKLYQTGSLYDSLEI 193
+L +TG D+ +
Sbjct: 349 KLRARLKETGDHRDAAAL 366
>gi|168334239|ref|ZP_02692440.1| anthranilate/para-aminobenzoate synthase component I, TrpE
[Epulopiscium sp. 'N.t. morphotype B']
Length = 481
Score = 41.7 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 20/153 (13%)
Query: 26 DSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIA---- 81
D+ L P Y + +++ AL I G +P+ + K +D +I +
Sbjct: 249 DAYRMLRVNNPSPY--MYFIKSDALEIC------GTSPETLVKVVDRKITTFPVAGTRPR 300
Query: 82 -----ENQQLEHLFPQTKDPAQRENFFKNLFR--IGNILGFQKEEMVDITD-HRLLSLAY 133
E+ +LE + N +L R IG + F E+ + HR + +
Sbjct: 301 GKTPEEDAELERSLLADEKELAEHNMLVDLARNDIGRVAAFGTVEVEEYLQIHRYSKVMH 360
Query: 134 YAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAK 166
A I + K S DA+H I + K
Sbjct: 361 IASIVSGTLKKSFDAFHAINSLLPAGTLSGAPK 393
>gi|316934286|ref|YP_004109268.1| hypothetical protein Rpdx1_2954 [Rhodopseudomonas palustris DX-1]
gi|315602000|gb|ADU44535.1| hypothetical protein Rpdx1_2954 [Rhodopseudomonas palustris DX-1]
Length = 350
Score = 41.7 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 58/158 (36%), Gaps = 5/158 (3%)
Query: 40 HRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLF-PQTKDPAQ 98
+ +R A IA+ L S+ ++ + L L P+
Sbjct: 180 EELVAVRNAAKAAYEDVQYLETETSRIAEALRSQARQELMERAKDCLVTLTDPEKGIEGF 239
Query: 99 RENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFV 158
+ + ++ G + + D+ D + L A++ L+ Q++ + A + P
Sbjct: 240 DQKMYGDICSFAVEQGLPADLVNDLVDPTAIKLINMARLYLKGQQVVQTAKSDKKKAPKR 299
Query: 159 NITTNKAKNHRR----ITSQEKAIQKLYQTGSLYDSLE 192
+ + + + R + +++L +GS+ D+ +
Sbjct: 300 IVKSTASPDQTRKVIKTAKAAEPMKRLKTSGSVDDASD 337
>gi|291334406|gb|ADD94062.1| hypothetical protein [uncultured phage MedDCM-OCT-S01-C1]
Length = 367
Score = 40.9 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 11/139 (7%)
Query: 31 LEKTYPETY---HRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKK---LIAENQ 84
L T P + R +R + L G ++ + +++ L +E +
Sbjct: 192 LRVTDPGEWTAKQREFEIRNQELQQAGQM--LGEQMKAQNEQQSQQHAQERSVILNSERE 249
Query: 85 QLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKL 144
++ P +D + + + GF +E+ D+ R + + A + Q + +
Sbjct: 250 KMIENNPSWRDEEKMKGDLTKIVEYAKSNGFADDELSDVIHSRHVEVLRKAYLYDQGKTV 309
Query: 145 SEDAYHKIRHKPFVNITTN 163
+ K++ P + +N
Sbjct: 310 ASK---KVKQAPNMQRASN 325
>gi|27476050|ref|NP_775252.1| putative scaffold protein [Pseudomonas phage PaP3]
gi|27414480|gb|AAL85566.1| ORF.06 [Pseudomonas phage PaP3]
Length = 334
Score = 40.1 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 29 PTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEH 88
L+ PE Y ++R +A + ++ + + ++ I + + + +
Sbjct: 163 EQLKAQDPEKYQKLRLEALEARDQAQALIKRRNDIKAMQEKRAEIIHSSYIKRQTELAKK 222
Query: 89 LFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDA 148
L P+ E + + G +G+ ++E+ I D R L++ A+ +SQ + A
Sbjct: 223 LIPEMTTD---ETWGDKIVAYGKSIGYSEDEIRGIADARQLAVLDAARKWAESQVRRKAA 279
Query: 149 YHK-------IRHKPFV--NITTNKAKNHRRITSQEKAIQKLYQTGSLYDSLEI 193
K KP + +K + + + Q + +L+ SL+I
Sbjct: 280 LEKKEETELPAAVKPVARRAEASEGSKRVKAARANLRKDQSVEAAAALFSSLDI 333
>gi|167600436|ref|YP_001671936.1| scaffolding protein [Pseudomonas phage LUZ24]
gi|161168299|emb|CAP45464.1| scaffolding protein [Pseudomonas phage LUZ24]
Length = 330
Score = 39.0 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Query: 29 PTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEH 88
L+ PE Y +R +A + ++ + + ++ I + + + +
Sbjct: 159 EQLKAQDPEKYQTLRLEALEARDRAQALIKRRNDIKAMQEKRAEIIHSAYVKRQTELAKK 218
Query: 89 LFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDA 148
L P+ E++ + G +G+ ++E+ I+D R L++ A+ +SQ + A
Sbjct: 219 LIPEMTTD---ESWGDKIVSYGKSIGYSEDEIRGISDARQLAVLDAARKWAESQVRRKAA 275
Query: 149 YHK-------IRHKPFV--NITTNKAKNHRRITSQEKAIQKLYQTGSLYDSLEI 193
K KP + +K + + + Q + +L+ SL+I
Sbjct: 276 LEKKEETELPAAVKPAARRAEASEGSKRVKAARANLRKDQSVEAAAALFSSLDI 329
>gi|115762712|ref|XP_001200147.1| PREDICTED: similar to ankyrin 2,3/unc44 [Strongylocentrotus
purpuratus]
gi|115929849|ref|XP_001189612.1| PREDICTED: similar to ankyrin 2,3/unc44 [Strongylocentrotus
purpuratus]
Length = 1149
Score = 39.0 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 47 QKALNIINHFVETGRNPDNIAKELDSEILEKKLIAE-NQQLEHLFPQTKDPAQRENFFKN 105
Q A + +E+ +P + I + LI ++ F + P KN
Sbjct: 306 QAAKETVLSLMESLESPAE-----EMAISDIGLIGVIPERTLLAFARQIRP-------KN 353
Query: 106 LFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSED 147
+ IG LGF K E+ +HR L YA I + S+ +S
Sbjct: 354 FYEIGQKLGFNKSELQHF-EHRTLYNRKYANIQMLSRWISSQ 394
>gi|154299502|ref|XP_001550170.1| hypothetical protein BC1G_11013 [Botryotinia fuckeliana B05.10]
gi|150857355|gb|EDN32547.1| hypothetical protein BC1G_11013 [Botryotinia fuckeliana B05.10]
Length = 618
Score = 38.6 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 1/115 (0%)
Query: 19 INHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKK 78
I ++P P ++ + L Q + + + P A L K+
Sbjct: 210 IESNLPPAPDPEAQEEDTYESAIQKKLLQGLVTHMLE-MYIDVYPLEWAGRLQESFDPKR 268
Query: 79 LIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAY 133
++A L F T + RE L + L +++ T H +A+
Sbjct: 269 VVAGRTSLAEAFQTTPEYQTRETVAGQLVSLSRDLELANYDLLFDTIHSKEPIAH 323
>gi|7362932|emb|CAB57253.3| putative glycosyltransferase [Entodinium caudatum]
Length = 410
Score = 38.2 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 98 QRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPF 157
++E F ++F + I F K E + T +LL + ++ L+ +K+ E Y K K
Sbjct: 328 KKERMFGDVFNLETIFDFSKNEYKNFTIDKLLKMKAWSHFTLEDEKIKE--YFKSVIKKI 385
Query: 158 VNITTNKAKNHRRITSQEKA 177
+N + K I K
Sbjct: 386 LNSKYLEEKYKLEIRKAYKG 405
>gi|325001241|ref|ZP_08122353.1| succinyl-CoA synthetase subunit beta [Pseudonocardia sp. P1]
Length = 391
Score = 38.2 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 29 PTLEKTYPETYHRIRYLRQKALNII--NHFVETGRNPDNIAKELDSEILE--KKLIAENQ 84
L PE RI ++ + V G+ P +A E + I++ + +AE+
Sbjct: 126 EELAVERPEALARIAIDPIAGVDKAKADEIVAAGKIPAAVADEAANVIVKLWETFVAEDA 185
Query: 85 QLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127
L + P +DP + + F+ E ++ D R
Sbjct: 186 TLVEVNPLVRDPQDKVIALDGKVTLDENAAFRHEAHAELVDER 228
>gi|320161008|ref|YP_004174232.1| ArsR family transcriptional regulator [Anaerolinea thermophila
UNI-1]
gi|319994861|dbj|BAJ63632.1| ArsR family transcriptional regulator [Anaerolinea thermophila
UNI-1]
Length = 194
Score = 37.8 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 2 QNQA-KILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
Q+ + + ++ S ++HH+ S L PE+Y+ I L L ++ +
Sbjct: 38 QSMSVEQISTSLNLSPSTVSHHLAKLSEAGLVTAKPESYYNIYSLNSATLEEMSQRLLRK 97
Query: 61 RNPDNIAKELDSEILEKKLIAE----NQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQ 116
N +A+E+D E ++K+I + +L+ + Q K + F G +
Sbjct: 98 ENLVQLAEEIDLESFDRKVIRDYMTPTGKLKTIPAQEKKLLAILRYLAQSFETGK--SYS 155
Query: 117 KEEMVDIT 124
+ E+ +I
Sbjct: 156 EREVNEIL 163
>gi|239827968|ref|YP_002950592.1| recombination and DNA strand exchange inhibitor protein
[Geobacillus sp. WCH70]
gi|259511159|sp|C5D5Q8|MUTS2_GEOSW RecName: Full=MutS2 protein
gi|239808261|gb|ACS25326.1| MutS2 family protein [Geobacillus sp. WCH70]
Length = 784
Score = 37.4 bits (85), Expect = 0.96, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENF-FKNLFRIGNILGFQKEE 119
R + KE +EI E +LI ++LE P + + ++ F+ G+ +
Sbjct: 592 RELRRMQKEKQAEIKEHELIEAKKRLEEAIPTLEKKKKERKKQTQHAFQPGDEVKVTSLN 651
Query: 120 MVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITT---NKAKNHR------- 169
++ + Q+G+ K++E I P K K++
Sbjct: 652 QKGYLVEKVSDDEWQVQLGILKMKINERDLEYIGSAPKTETKPLATVKGKDYHVGLELDL 711
Query: 170 RITSQEKAIQKLYQTGSLYDSLEIDF 195
R E AI +L + + D+L +
Sbjct: 712 RGERYEDAIVRLEKY--IDDALLAGY 735
>gi|283769574|ref|ZP_06342470.1| DNA primase [Bulleidia extructa W1219]
gi|283103842|gb|EFC05228.1| DNA primase [Bulleidia extructa W1219]
Length = 578
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 62 NPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMV 121
+PD I ++ E LEK L E + F + + + + ++G + F+ + +
Sbjct: 337 DPDEIYRQKGQEALEKFLKQE-ESFMEFFMDYQLKSANLSNYSERKKVGQEIAFEIQNLK 395
Query: 122 DITDHRLLSLAYYAQIGLQSQKLSEDAYHK 151
D D R ++GL + K
Sbjct: 396 DEVDRRYFQHLLEEKLGLNFKVSVNKTRTK 425
>gi|312863113|ref|ZP_07723351.1| ApbE family protein [Streptococcus vestibularis F0396]
gi|322517022|ref|ZP_08069911.1| lipoprotein involved thiamine biosynthesis [Streptococcus
vestibularis ATCC 49124]
gi|311100649|gb|EFQ58854.1| ApbE family protein [Streptococcus vestibularis F0396]
gi|322124439|gb|EFX95936.1| lipoprotein involved thiamine biosynthesis [Streptococcus
vestibularis ATCC 49124]
Length = 310
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 23 IPDDSSPTLEKTYP-----ETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEK 77
+P++ +P L+ P ++ +L++K + I + G D IA L E +
Sbjct: 109 LPEEIAPLLDIINPKDIVLSEENQSVFLKEKGMKIDLGALAKGYIADRIADYLKDENVTS 168
Query: 78 KLIAENQQLEHLFPQTKDPAQR 99
LI + P +P Q+
Sbjct: 169 ALINLGGNVLTFGPALHNPDQK 190
>gi|170724679|ref|YP_001758705.1| hypothetical protein Swoo_0309 [Shewanella woodyi ATCC 51908]
gi|169810026|gb|ACA84610.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
Length = 898
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 26/70 (37%)
Query: 31 LEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLF 90
++ P I+ LR + ++ I VE N NIA + E K L LE
Sbjct: 808 VDLDDPSALEPIKTLRDQTIHEIERLVELRDNTGNIAINMHLEHNLKLLKNTESVLESAS 867
Query: 91 PQTKDPAQRE 100
+ +E
Sbjct: 868 NLLGNKESKE 877
>gi|260579223|ref|ZP_05847112.1| non-ribosomal peptide synthetase [Corynebacterium jeikeium ATCC
43734]
gi|258602651|gb|EEW15939.1| non-ribosomal peptide synthetase [Corynebacterium jeikeium ATCC
43734]
Length = 3504
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 44 YLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFF 103
L + LN+ GR P IA+ + + ++K+ Q E P+
Sbjct: 2005 ALARADLNVTPRDFFLGRTPRKIAERVTPQATQQKIQETRQSQEEALPKDGHQE-----I 2059
Query: 104 KNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPF 157
F I +L Q E ++D A +G + + E A ++
Sbjct: 2060 SGAFPIPAMLRRQME--RGMSDR--FVQARRLDLGPVAVEDLEQALQQVAQAHP 2109
>gi|68536869|ref|YP_251574.1| non-ribosomal peptide synthetase [Corynebacterium jeikeium K411]
gi|68264468|emb|CAI37956.1| non-ribosomal peptide synthetase [Corynebacterium jeikeium K411]
Length = 3618
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 44 YLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFF 103
L + LN+ GR P IA+ + + ++K+ Q E P+
Sbjct: 2119 ALARADLNVTPRDFFLGRTPRKIAERVTPQATQQKIQETRQSQEEALPKDGHQE-----I 2173
Query: 104 KNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPF 157
F I +L Q E ++D A +G + + E A ++
Sbjct: 2174 SGAFPIPAMLRRQME--RGMSDR--FVQARRLDLGPVAVEDLEQALQQVAQAHP 2223
>gi|172040009|ref|YP_001799723.1| non-ribosomal peptide synthetase [Corynebacterium urealyticum DSM
7109]
gi|171851313|emb|CAQ04289.1| non-ribosomal peptide synthetase [Corynebacterium urealyticum DSM
7109]
Length = 3618
Score = 36.7 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 44 YLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFF 103
L + LN+ GR P IA+ + + ++K+ Q E P+
Sbjct: 2119 ALARADLNVTPRDFFLGRTPRKIAERVTPQATQQKIQETRQSQEEALPKDGHQE-----I 2173
Query: 104 KNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPF 157
F I +L Q E ++D A +G + + E A ++
Sbjct: 2174 SGAFPIPAMLRRQME--RGMSDR--FVQARRLDLGPVAVEDLEQALQQVAQAHP 2223
>gi|257465992|ref|ZP_05630303.1| type I restriction enzyme EcoKI subunit R [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917148|ref|ZP_07913388.1| type I restriction enzyme EcoKI subunit R [Fusobacterium
gonidiaformans ATCC 25563]
gi|313691023|gb|EFS27858.1| type I restriction enzyme EcoKI subunit R [Fusobacterium
gonidiaformans ATCC 25563]
Length = 1088
Score = 35.9 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
+ P NI + E L K+ NQQLE P+T RE + +++ + F + E
Sbjct: 136 QKPKNIDYQEAYESLVKRSEEMNQQLEEWIPKTPSLRSREERRQLIYQ-KKRIEFTEAET 194
Query: 121 VDITDHRL 128
+I DH+L
Sbjct: 195 REIIDHQL 202
>gi|329664360|ref|NP_001192894.1| laminin subunit alpha-4 [Bos taurus]
Length = 1824
Score = 35.9 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 29/186 (15%)
Query: 29 PTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAK----------------ELDS 72
L + + +++ ++++++ INH + N+ EL S
Sbjct: 354 EELAERESQASRKVQLAQKESMDTINHATQLAEQAHNMRDKIQEISSKMLYYGEEQELSS 413
Query: 73 EILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR-LLSL 131
E + +KL+ + LE + + QRE + +L + D R L +
Sbjct: 414 EEISEKLVLAQKMLEEIRRRQPFLTQRELVDEEADEAHELLSQAESWQRQYNDTRSLFPV 473
Query: 132 A------YYAQIGLQSQKLSEDAYHKIR-----HKPFVNITTNKAKNHRRITSQEKAIQK 180
Y A++ + L + A + +R ++ + K H R+ Q + +
Sbjct: 474 VLEQLDDYNAKLSDLQESL-DQALNHVRDAEDMNRATAARQRDHEKQHERVREQTEGVNA 532
Query: 181 LYQTGS 186
+T S
Sbjct: 533 SLRTSS 538
>gi|297467611|ref|XP_002705187.1| PREDICTED: laminin, alpha 4 [Bos taurus]
Length = 1817
Score = 35.9 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 29/186 (15%)
Query: 29 PTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAK----------------ELDS 72
L + + +++ ++++++ INH + N+ EL S
Sbjct: 347 EELAERESQASRKVQLAQKESMDTINHATQLAEQAHNMRDKIQEISSKMLYYGEEQELSS 406
Query: 73 EILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR-LLSL 131
E + +KL+ + LE + + QRE + +L + D R L +
Sbjct: 407 EEISEKLVLAQKMLEEIRRRQPFLTQRELVDEEADEAHELLSQAESWQRQYNDTRSLFPV 466
Query: 132 A------YYAQIGLQSQKLSEDAYHKIR-----HKPFVNITTNKAKNHRRITSQEKAIQK 180
Y A++ + L + A + +R ++ + K H R+ Q + +
Sbjct: 467 VLEQLDDYNAKLSDLQESL-DQALNHVRDAEDMNRATAARQRDHEKQHERVREQTEGVNA 525
Query: 181 LYQTGS 186
+T S
Sbjct: 526 SLRTSS 531
>gi|156986980|gb|ABU99468.1| heat shock protein 90 [Phytophthora sulawesiensis]
Length = 582
Score = 35.9 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEVTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156987084|gb|ABU99520.1| heat shock protein 90 [Phytophthora medicaginis]
Length = 567
Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 283 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 342
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 343 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 400
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 401 --KAVENSPFIEKLKKKG 416
>gi|156986904|gb|ABU99430.1| heat shock protein 90 [Phytophthora trifolii]
Length = 583
Score = 35.5 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156987006|gb|ABU99481.1| heat shock protein 90 [Phytophthora erythroseptica]
Length = 574
Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 290 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 349
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 350 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 407
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 408 --KAVENSPFIEKLKKKG 423
>gi|156986920|gb|ABU99438.1| heat shock protein 90 [Phytophthora trifolii]
Length = 582
Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156986854|gb|ABU99405.1| heat shock protein 90 [Phytophthora medicaginis]
Length = 582
Score = 35.5 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|253990285|ref|YP_003041641.1| transposase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253781735|emb|CAQ84898.1| similar to putative transposase [Photorhabdus asymbiotica]
Length = 316
Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 6 KILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG--RNP 63
KIL AL +++ HI L + Y ++ +++N+ ++ G +P
Sbjct: 166 KILTHKRVALLEIVQKHIRQRDMAELLQELIMLLTYDYYTDEQLKSVLNYLLQVGDTADP 225
Query: 64 DNIAKEL--DSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMV 121
+ + L S E+ L+ Q+LE Q R+ + + G G Q+ +
Sbjct: 226 EGFIRRLAEQSPKYEEVLMTIAQKLEQKGRQEGRREGRQEGRQEGRQEGRQEGRQEATLK 285
Query: 122 DITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRH 154
H LL+ + +++ LS++ +IRH
Sbjct: 286 --IAHALLNSGIDRETVMKATGLSQNELEQIRH 316
>gi|156986866|gb|ABU99411.1| heat shock protein 90 [Phytophthora cinnamomi]
gi|156987012|gb|ABU99484.1| heat shock protein 90 [Phytophthora cinnamomi]
Length = 582
Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLIKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156986812|gb|ABU99384.1| heat shock protein 90 [Phytophthora cinnamomi]
gi|156986816|gb|ABU99386.1| heat shock protein 90 [Phytophthora cinnamomi]
gi|156986824|gb|ABU99390.1| heat shock protein 90 [Phytophthora cinnamomi]
gi|156986852|gb|ABU99404.1| heat shock protein 90 [Phytophthora cinnamomi]
Length = 582
Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156986958|gb|ABU99457.1| heat shock protein 90 [Phytophthora sansomea]
Length = 582
Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156986766|gb|ABU99361.1| heat shock protein 90 [Phytophthora kelmania]
gi|156987064|gb|ABU99510.1| heat shock protein 90 [Phytophthora sp. P3103]
gi|156987134|gb|ABU99545.1| heat shock protein 90 [Phytophthora drechsleri]
Length = 582
Score = 35.5 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156986734|gb|ABU99345.1| heat shock protein 90 [Phytophthora drechsleri]
Length = 583
Score = 35.5 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|156986744|gb|ABU99350.1| heat shock protein 90 [Phytophthora richardiae]
gi|156986832|gb|ABU99394.1| heat shock protein 90 [Phytophthora erythroseptica]
gi|156986838|gb|ABU99397.1| heat shock protein 90 [Phytophthora richardiae]
gi|156987000|gb|ABU99478.1| heat shock protein 90 [Phytophthora sp. P10672]
gi|156987010|gb|ABU99483.1| heat shock protein 90 [Phytophthora cryptogea]
gi|156987026|gb|ABU99491.1| heat shock protein 90 [Phytophthora richardiae]
gi|156987048|gb|ABU99502.1| heat shock protein 90 [Phytophthora richardiae]
gi|156987050|gb|ABU99503.1| heat shock protein 90 [Phytophthora richardiae]
gi|156987068|gb|ABU99512.1| heat shock protein 90 [Phytophthora richardiae]
gi|156987110|gb|ABU99533.1| heat shock protein 90 [Phytophthora erythroseptica]
Length = 582
Score = 35.5 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|297740437|emb|CBI30619.3| unnamed protein product [Vitis vinifera]
Length = 499
Score = 35.5 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 43 RYLRQKALNIINHFVETGRNPDNIA-KELDSEILEKKLIAENQQLEHLFP-QTKDPAQRE 100
R A I + + P+ ++ +E E +K L A N P + K +
Sbjct: 353 RRAYDSATEIYMSAFDRTKPPEEVSLRESHDEAKQKSLAAFNASAVGAGPTRQKYENLLQ 412
Query: 101 NFFKNLFRIGNILGFQKEEMV 121
NFF+ F F + ++
Sbjct: 413 NFFRKAFEDYKRTAFMEADLQ 433
>gi|156986844|gb|ABU99400.1| heat shock protein 90 [Phytophthora clandestina]
Length = 582
Score = 35.5 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 50 LNIINHFVETGRNPDNIAKELDSEILEKKLIAEN--QQLEHLFPQTKDPAQRENFFKNLF 107
L+ + V++ P NI++E + ++I +N ++ +F + + ++ N F F
Sbjct: 298 LSFVKGVVDSEDLPLNISRETLQQNKILRVIKKNLVKKCLEMFAELAEDNEKYNKFYEAF 357
Query: 108 RIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAKN 167
LG ++ +LL + + G + L + ++P + T ++K
Sbjct: 358 SKNLKLGIHEDSTNRTKIAKLLRY-HSTKSGEEMTSLDDYISRMPENQPGIYYVTGESK- 415
Query: 168 HRRITSQEKAIQKLYQTG 185
+ I+KL + G
Sbjct: 416 --KAVENSPFIEKLKKKG 431
>gi|147859754|emb|CAN78721.1| hypothetical protein VITISV_012125 [Vitis vinifera]
Length = 495
Score = 35.1 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 43 RYLRQKALNIINHFVETGRNPDNIA-KELDSEILEKKLIAENQQLEHLFP-QTKDPAQRE 100
R A I + + P+ ++ +E E +K L A N P + K +
Sbjct: 353 RRAYDSATEIYMSAFDRTKPPEEVSLRESHDEAKQKSLAAFNASAVGAGPTRQKYENLLQ 412
Query: 101 NFFKNLFRIGNILGFQKEEMV 121
NFF+ F F + ++
Sbjct: 413 NFFRKAFEDYKRTAFMEADLQ 433
>gi|297478490|ref|XP_002690150.1| PREDICTED: laminin, alpha 4, partial [Bos taurus]
gi|296484180|gb|DAA26295.1| laminin, alpha 4 [Bos taurus]
Length = 685
Score = 35.1 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 29/186 (15%)
Query: 29 PTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAK----------------ELDS 72
L + + +++ ++++++ INH + N+ EL S
Sbjct: 354 EELAERESQASRKVQLAQKESMDTINHATQLAEQAHNMRDKIQEISSKMLYYGEEQELSS 413
Query: 73 EILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR-LLSL 131
E + +KL+ + LE + + QRE + +L + D R L +
Sbjct: 414 EEISEKLVLAQKMLEEIRRRQPFLTQRELVDEEADEAHELLSQAESWQRQYNDTRSLFPV 473
Query: 132 A------YYAQIGLQSQKLSEDAYHKIR-----HKPFVNITTNKAKNHRRITSQEKAIQK 180
Y A++ + L + A + +R ++ + K H R+ Q + +
Sbjct: 474 VLEQLDDYNAKLSDLQESL-DQALNHVRDAEDMNRATAARQRDHEKQHERVREQTEGVNA 532
Query: 181 LYQTGS 186
+T S
Sbjct: 533 SLRTSS 538
>gi|255080812|ref|XP_002503979.1| predicted protein [Micromonas sp. RCC299]
gi|226519246|gb|ACO65237.1| predicted protein [Micromonas sp. RCC299]
Length = 1022
Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 17/182 (9%)
Query: 20 NHHIPDDSSPTLEKTYPETY---HRIRYLR-QKALNIINHFV----ETGRNPDNIAKELD 71
+ +P+D E Y R R Q+ LN + + E + N AKE+
Sbjct: 806 DADLPNDPDLLKALKAAEKYAEASRQRADELQERLNAVEQMMKMFGEMSEHQYNTAKEIA 865
Query: 72 SEILE--KKLIAENQQLEHLFP------QTKDPAQRENFFKNLFRIGNILGFQKEEMVDI 123
SE + +++++ F + R F G ++E+ +
Sbjct: 866 SEATRRLESTTNVDERIDKRFEDMTLMLREARDEGRAEGFTEARNELQRFGSLEDEIAAM 925
Query: 124 TDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFV-NITTNKAKNHRRITSQEKAIQKLY 182
+ + + G++ + K R + + +A S E A ++
Sbjct: 926 SPEARAIVEKGLREGMEHGVVKGMQLEKERRRKAAISYKIKRALGLASSNSPEDAKKRAA 985
Query: 183 QT 184
Q
Sbjct: 986 QA 987
>gi|149921227|ref|ZP_01909683.1| serine/threonine kinase family protein [Plesiocystis pacifica
SIR-1]
gi|149817887|gb|EDM77349.1| serine/threonine kinase family protein [Plesiocystis pacifica
SIR-1]
Length = 1051
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 25/149 (16%)
Query: 2 QNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLR-QKALNIINHFVETG 60
Q A +AQ+ ++++ L+ P +S L ++ P T R L + + + E G
Sbjct: 470 QADAGTVAQAPDSVSSLV----PPESCRDLARSGPTTRTREESLEVEATVAKAESYAELG 525
Query: 61 RNPDNIAKELDSEILEKKLIAE--------NQQLEHLFPQTK---DPAQRENFFKNLFRI 109
R + L S L AE +L +F Q+ E+
Sbjct: 526 RYEE----ALRSSARATTLAAELGDVGGTGRAKLATMFAQSGLGRYEDAIES-GHEAIHA 580
Query: 110 GNILGFQKEEMVDITDHRLLSLAYYAQIG 138
+ G ++ + ++L + YAQ+G
Sbjct: 581 AALAGDEETQARA----QILLVRNYAQLG 605
>gi|325677646|ref|ZP_08157298.1| exonuclease SbcCD, C subunit [Ruminococcus albus 8]
gi|324110614|gb|EGC04778.1| exonuclease SbcCD, C subunit [Ruminococcus albus 8]
Length = 927
Score = 34.3 bits (77), Expect = 9.1, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%)
Query: 22 HIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKEL---------DS 72
+P T T R + L+I+ +++ + K+
Sbjct: 337 QLPLYDEAERLLTDSVTLQRNAAKLKNDLDILGSSIKSDNERREVLKQFIDSLGDIGAQL 396
Query: 73 EILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDI-TDH-RLLS 130
+ ++ ++LE + KD ++ E + ++KEE + ++H RL +
Sbjct: 397 ANTKNEIENRTKELEEVTAVGKDLSEAEKLGAEVQSALEEFNYKKEESNNANSEHIRLFN 456
Query: 131 LAYYAQIGLQSQKLSEDAYHKI---RHKPFVNITTNKAKNHRRITSQEKAIQK 180
L Q GL +++L E + H P + KA + + + + + K
Sbjct: 457 LYISEQAGLLAEELEEGVPCPVCGSTHHPNKAHRSEKAPDKQAVDRAKAVLDK 509
>gi|37525587|ref|NP_928931.1| hypothetical protein plu1643 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785015|emb|CAE13936.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 320
Score = 34.3 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 6 KILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG--RNP 63
+IL AL +++ HI L + Y ++ +++N+ ++ G +P
Sbjct: 166 EILTHKRVALLEMVQKHIRQRDMAELLQELVILLTYDYYTDEQLKSVLNYLLQVGDTADP 225
Query: 64 DNIAKEL--DSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQK--EE 119
+ + L S E+ L+ Q+LEH Q R+ + + G G Q+ +E
Sbjct: 226 EGFIRRLAEQSPRYEEVLVTIAQRLEHKARQEGRQEGRQEGRQEGRQEGRQEGRQEGRQE 285
Query: 120 MVDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRH 154
H LL+ + +++ LS++ +IRH
Sbjct: 286 ATLKIAHALLNSGIDCETVMKTTGLSQNELEQIRH 320
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.302 0.127 0.309
Lambda K H
0.267 0.0384 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,843,183,604
Number of Sequences: 14124377
Number of extensions: 96961418
Number of successful extensions: 348130
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 348063
Number of HSP's gapped (non-prelim): 202
length of query: 196
length of database: 4,842,793,630
effective HSP length: 132
effective length of query: 64
effective length of database: 2,978,375,866
effective search space: 190616055424
effective search space used: 190616055424
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 77 (34.4 bits)