RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781141|ref|YP_003065554.1| hypothetical protein
CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62]
         (196 letters)



>3dnp_A Stress response protein YHAX; structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics, MCSG; HET: MSE; 1.85A {Bacillus
           subtilis} (A:1-85,A:201-290)
          Length = 175

 Score = 28.7 bits (64), Expect = 0.59
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 35  YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTK 94
           +  T   I Y+++K    I   + T R+  +  K   S  L+ KLI  +           
Sbjct: 25  HQATKDAIEYVKKKG---IYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIA-EKIDA 80

Query: 95  DPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127
              ++ +    L  + + LG   +++V I    
Sbjct: 81  PFFEKVSKEAGLALVASELGLSXDDVVAIGHQY 113


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 27.8 bits (62), Expect = 0.89
 Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 12/34 (35%)

Query: 109 IGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQ 142
           + +++  +           L+ + +Y   G+  Q
Sbjct: 2   LADVMSIES----------LVEVVFYR--GMTMQ 23


>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
           superfamily, structural genomics; 1.60A {Pyrococcus
           horikoshii OT3} (A:1-82,A:152-231)
          Length = 162

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 4/92 (4%)

Query: 35  YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTK 94
           + +    IR         I   + TG                  ++AE+      + + +
Sbjct: 22  HEKALEAIRRAESLG---IPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAIS-YKKKR 77

Query: 95  DPAQRENFFKNLFRIGNILGFQKEEMVDITDH 126
                 N    + +    LG + +E+  + D 
Sbjct: 78  IFLASINKGSGIEKASEFLGIKPKEVAHVGDG 109


>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
           dehalogenase like hydrolase, mannosylglycerate,
           cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
           horikoshii} PDB: 1wzc_A (A:1-94,A:179-249)
          Length = 165

 Score = 26.3 bits (58), Expect = 2.7
 Identities = 13/111 (11%), Positives = 25/111 (22%), Gaps = 24/111 (21%)

Query: 18  LINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEK 77
           LI  + P                 I  L+            + +             +E 
Sbjct: 13  LIPGYEP-----------DPAKPIIEELKDXG---FEIIFNSSKTRAEQEYYRKELEVET 58

Query: 78  KLIAEN------QQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVD 122
             I+EN       +    F               +  +G   G   + ++D
Sbjct: 59  PFISENGSAIFIPKGYFPFDVKGKEVG----NYIVIELGIDKGKAAKILLD 105


>1l6r_A Hypothetical protein TA0175; structural genomics, putative
          hydrolase, midwest center for structural genomics,
          MCSG, PSI; 1.40A {Thermoplasma acidophilum}
          (A:1-85,A:153-227)
          Length = 160

 Score = 25.7 bits (56), Expect = 3.8
 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 35 YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAEN 83
            +    IR   +K    +   + +G     +        +   +  EN
Sbjct: 24 STKAIESIRSAEKK---GLTVSLLSGNVIPVVYALKIFLGINGPVFGEN 69


>2a2f_X Exocyst complex component SEC15; all helical structure,
           protein transport; 2.50A {Drosophila melanogaster}
           (X:1-173)
          Length = 173

 Score = 25.6 bits (56), Expect = 4.6
 Identities = 5/57 (8%), Positives = 17/57 (29%)

Query: 33  KTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHL 89
           +  PE YH+ +      +        +      + ++  + +L +        +   
Sbjct: 75  RMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQ 131


>1txk_A OPGG, glucans biosynthesis protein G; beta-sandwich,
          biosynthetic protein; 2.50A {Escherichia coli} (A:)
          Length = 498

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 8  LAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKAL 50
          +A+ A++LA         +            Y +I++   KA 
Sbjct: 7  VAKQAQSLAGKGYETPKSNLPSVFRDXKYADYQQIQFNHDKAY 49


>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl
           transferase, DNA binding, endonuclease, integrase; 2.40A
           {Bacteriophage MU} (A:)
          Length = 327

 Score = 25.3 bits (53), Expect = 5.1
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 35  YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTK 94
                 +  Y     +N     V    +P  +   +    L+ + I E + L        
Sbjct: 262 GSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVYCYTLDGRFICEAECLAP-VAFND 320

Query: 95  DPAQRE 100
             A RE
Sbjct: 321 AAAGRE 326


>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis}
           PDB: 3hfa_H 2fhg_H* 2fhh_H 3h6i_C 3h6f_C 3hf9_H (A:)
          Length = 291

 Score = 24.9 bits (53), Expect = 7.3
 Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 6/70 (8%)

Query: 83  NQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQ 142
            Q  E L       A        L     I+  +           +++    +  G    
Sbjct: 31  RQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYP------GGVVMAGDRRSTQGNMIS 84

Query: 143 KLSEDAYHKI 152
                  +  
Sbjct: 85  GRDVRKVYIT 94


>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein
           structure initiative, MCSG, structural genomics; HET:
           MSE; 2.01A {Streptococcus pneumoniae TIGR4} (A:)
          Length = 216

 Score = 24.4 bits (53), Expect = 9.5
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 7/60 (11%)

Query: 49  ALNIINHFVET----GRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFK 104
            L +    +      G  P         E    +++ E +Q+ H    T      ++F K
Sbjct: 129 TLKLXFERLFAEEXGGGYPRERVI---PEQRNARILNEVKQITHNDLXTILKIIDQDFLK 185


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,445,956
Number of extensions: 63098
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 23
Length of query: 196
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 112
Effective length of database: 2,116,429
Effective search space: 237040048
Effective search space used: 237040048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)