RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62] (196 letters) >3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290) Length = 175 Score = 28.7 bits (64), Expect = 0.59 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%) Query: 35 YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTK 94 + T I Y+++K I + T R+ + K S L+ KLI + Sbjct: 25 HQATKDAIEYVKKKG---IYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIA-EKIDA 80 Query: 95 DPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127 ++ + L + + LG +++V I Sbjct: 81 PFFEKVSKEAGLALVASELGLSXDDVVAIGHQY 113 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.8 bits (62), Expect = 0.89 Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 12/34 (35%) Query: 109 IGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQ 142 + +++ + L+ + +Y G+ Q Sbjct: 2 LADVMSIES----------LVEVVFYR--GMTMQ 23 >1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231) Length = 162 Score = 26.9 bits (59), Expect = 2.0 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 4/92 (4%) Query: 35 YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTK 94 + + IR I + TG ++AE+ + + + Sbjct: 22 HEKALEAIRRAESLG---IPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAIS-YKKKR 77 Query: 95 DPAQRENFFKNLFRIGNILGFQKEEMVDITDH 126 N + + LG + +E+ + D Sbjct: 78 IFLASINKGSGIEKASEFLGIKPKEVAHVGDG 109 >2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:1-94,A:179-249) Length = 165 Score = 26.3 bits (58), Expect = 2.7 Identities = 13/111 (11%), Positives = 25/111 (22%), Gaps = 24/111 (21%) Query: 18 LINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEK 77 LI + P I L+ + + +E Sbjct: 13 LIPGYEP-----------DPAKPIIEELKDXG---FEIIFNSSKTRAEQEYYRKELEVET 58 Query: 78 KLIAEN------QQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVD 122 I+EN + F + +G G + ++D Sbjct: 59 PFISENGSAIFIPKGYFPFDVKGKEVG----NYIVIELGIDKGKAAKILLD 105 >1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:1-85,A:153-227) Length = 160 Score = 25.7 bits (56), Expect = 3.8 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%) Query: 35 YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAEN 83 + IR +K + + +G + + + EN Sbjct: 24 STKAIESIRSAEKK---GLTVSLLSGNVIPVVYALKIFLGINGPVFGEN 69 >2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} (X:1-173) Length = 173 Score = 25.6 bits (56), Expect = 4.6 Identities = 5/57 (8%), Positives = 17/57 (29%) Query: 33 KTYPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHL 89 + PE YH+ + + + + ++ + +L + + Sbjct: 75 RMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQ 131 >1txk_A OPGG, glucans biosynthesis protein G; beta-sandwich, biosynthetic protein; 2.50A {Escherichia coli} (A:) Length = 498 Score = 25.5 bits (56), Expect = 5.1 Identities = 8/43 (18%), Positives = 16/43 (37%) Query: 8 LAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKAL 50 +A+ A++LA + Y +I++ KA Sbjct: 7 VAKQAQSLAGKGYETPKSNLPSVFRDXKYADYQQIQFNHDKAY 49 >1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Bacteriophage MU} (A:) Length = 327 Score = 25.3 bits (53), Expect = 5.1 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%) Query: 35 YPETYHRIRYLRQKALNIINHFVETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTK 94 + Y +N V +P + + L+ + I E + L Sbjct: 262 GSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVYCYTLDGRFICEAECLAP-VAFND 320 Query: 95 DPAQRE 100 A RE Sbjct: 321 AAAGRE 326 >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3hfa_H 2fhg_H* 2fhh_H 3h6i_C 3h6f_C 3hf9_H (A:) Length = 291 Score = 24.9 bits (53), Expect = 7.3 Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 6/70 (8%) Query: 83 NQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHRLLSLAYYAQIGLQSQ 142 Q E L A L I+ + +++ + G Sbjct: 31 RQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYP------GGVVMAGDRRSTQGNMIS 84 Query: 143 KLSEDAYHKI 152 + Sbjct: 85 GRDVRKVYIT 94 >2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4} (A:) Length = 216 Score = 24.4 bits (53), Expect = 9.5 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 7/60 (11%) Query: 49 ALNIINHFVET----GRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFK 104 L + + G P E +++ E +Q+ H T ++F K Sbjct: 129 TLKLXFERLFAEEXGGGYPRERVI---PEQRNARILNEVKQITHNDLXTILKIIDQDFLK 185 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.133 0.369 Gapped Lambda K H 0.267 0.0651 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,445,956 Number of extensions: 63098 Number of successful extensions: 236 Number of sequences better than 10.0: 1 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 23 Length of query: 196 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 112 Effective length of database: 2,116,429 Effective search space: 237040048 Effective search space used: 237040048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.0 bits)