Query gi|254781142|ref|YP_003065555.1| hypothetical protein CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 82
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:07:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781142.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hrn_A Transient receptor pote 5.4 1.6E+02 0.0066 11.6 2.5 21 11-31 39-59 (64)
2 1mof_A Moloney murine leukemia 3.9 2.1E+02 0.0087 11.0 3.0 30 7-36 3-32 (55)
3 1xrs_A D-lysine 5,6-aminomutas 3.4 2.1E+02 0.0089 10.9 0.2 10 55-64 270-279 (516)
4 1a2x_B Troponin I; muscle cont 3.3 2.4E+02 0.01 10.7 3.0 20 12-31 7-26 (47)
5 1cf7_A Protein (transcription 2.9 2.6E+02 0.011 10.5 1.8 17 59-75 34-50 (76)
6 1a7g_E E2 DBD, regulatory prot 2.7 2.6E+02 0.011 10.5 0.0 21 33-53 1-21 (82)
7 1baz_A ARC repressor; transcri 2.7 2.8E+02 0.012 10.3 1.8 23 54-76 18-40 (53)
8 2qrd_A SNF1-like protein kinas 2.6 2.9E+02 0.012 10.2 1.2 16 51-66 120-135 (137)
9 1iio_A Conserved hypothetical 2.5 2.9E+02 0.012 10.2 2.3 25 18-42 8-32 (84)
10 1nla_A Transcriptional repress 2.3 3.2E+02 0.013 10.0 1.8 22 55-76 19-40 (64)
No 1
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=5.41 E-value=1.6e+02 Score=11.60 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998768778999999986
Q gi|254781142|r 11 MERHIINRRQSLGSLLITVLK 31 (82)
Q Consensus 11 merhiinrrqslgsllitvlk 31 (82)
|||.-..||..+|.+|-.+.+
T Consensus 39 meraK~krre~m~klLd~i~e 59 (64)
T 3hrn_A 39 MERAKLKRREVLGRLLDGVAE 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 899998889999888788977
No 2
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN, viral protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=3.89 E-value=2.1e+02 Score=10.98 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 377999999876877899999998627763
Q gi|254781142|r 7 SFADMERHIINRRQSLGSLLITVLKNARVP 36 (82)
Q Consensus 7 sfadmerhiinrrqslgsllitvlknarvp 36 (82)
.+..++..|-.-..++.|+--.||.|-|.-
T Consensus 3 dl~~~~~si~~L~~~l~sla~vvlQNRr~L 32 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999989999999988876
No 3
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=3.44 E-value=2.1e+02 Score=10.95 Aligned_cols=10 Identities=60% Similarity=0.926 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254781142|r 55 LHMIRTLIDQ 64 (82)
Q Consensus 55 lhmirtlidq 64 (82)
..|+||++||
T Consensus 270 INm~RtfvDq 279 (516)
T 1xrs_A 270 INMQRTMIDQ 279 (516)
T ss_dssp BCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 6435568889
No 4
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=3.28 E-value=2.4e+02 Score=10.68 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998768778999999986
Q gi|254781142|r 12 ERHIINRRQSLGSLLITVLK 31 (82)
Q Consensus 12 erhiinrrqslgsllitvlk 31 (82)
.|-+-.|||.|-|+...+-+
T Consensus 7 ~ra~taRrqHLKS~MLQiA~ 26 (47)
T 1a2x_B 7 NRAITARRQHLKSVMLQIAA 26 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 78988999999999999999
No 5
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=2.92 E-value=2.6e+02 Score=10.46 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=10.7
Q ss_pred HHHHHHHCCCCCCHHHH
Q ss_conf 99999725776501443
Q gi|254781142|r 59 RTLIDQVGMGKNRRIYK 75 (82)
Q Consensus 59 rtlidqvgmgknrriyk 75 (82)
...-+..|..+.||+|.
T Consensus 34 ~~~a~~l~v~~kRRlYD 50 (76)
T 1cf7_A 34 KLAADTLAVRQKRRIYD 50 (76)
T ss_dssp HHHHHHTTTCCTHHHHH
T ss_pred HHHHHHHCCCCHHHHHH
T ss_conf 99999966852145889
No 6
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cancer; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=2.73 E-value=2.6e+02 Score=10.49 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=15.9
Q ss_pred CCCCHHHHCCCCCHHHHHHHH
Q ss_conf 776314301254145799999
Q gi|254781142|r 33 ARVPIKILMGQRNQLTMIKFL 53 (82)
Q Consensus 33 arvpikilmgqrnqltmikfl 53 (82)
|-.|+-++-|.-|||--..|-
T Consensus 1 ~~tPvi~lkG~~N~LKC~RyR 21 (82)
T 1a7g_E 1 ATTPIIHLKGDANILKCLRYR 21 (82)
T ss_dssp CEEEEEEEEECHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCHHHH
T ss_conf 998899999796652257556
No 7
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=2.71 E-value=2.8e+02 Score=10.33 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999997257765014431
Q gi|254781142|r 54 FLHMIRTLIDQVGMGKNRRIYKK 76 (82)
Q Consensus 54 flhmirtlidqvgmgknrriykk 76 (82)
.|..+|.....-|-.-|..||+.
T Consensus 18 ~ldlvrkvaeengrs~nseiy~r 40 (53)
T 1baz_A 18 VLDLVRKVAEENGRSVNSEIYQR 40 (53)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999998186303999999
No 8
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP, ATP-binding, kinase, nucleotide-binding, serine/threonine-protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=2.57 E-value=2.9e+02 Score=10.23 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999999725
Q gi|254781142|r 51 KFLFLHMIRTLIDQVG 66 (82)
Q Consensus 51 kflflhmirtlidqvg 66 (82)
-|.||+|--.||-|..
T Consensus 120 ~f~Fldlca~LI~qLa 135 (137)
T 2qrd_A 120 SFPFLDLCAMLVCKLF 135 (137)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8558999999999986
No 9
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=2.54 E-value=2.9e+02 Score=10.21 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 6877899999998627763143012
Q gi|254781142|r 18 RRQSLGSLLITVLKNARVPIKILMG 42 (82)
Q Consensus 18 rrqslgsllitvlknarvpikilmg 42 (82)
-|+.+-+-++..+++|..||+--|.
T Consensus 8 ~ke~i~~qi~~a~~~a~FPI~s~~e 32 (84)
T 1iio_A 8 VKEDIRGQIIGALAGADFPINSPEE 32 (84)
T ss_dssp HHHHHHHHHHHHHTTSSSTTBHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 8999999999997179889899999
No 10
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=2.30 E-value=3.2e+02 Score=10.03 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999999997257765014431
Q gi|254781142|r 55 LHMIRTLIDQVGMGKNRRIYKK 76 (82)
Q Consensus 55 lhmirtlidqvgmgknrriykk 76 (82)
|..+|.....-|-.-|..||+.
T Consensus 19 ldlvrkvaeengrs~nseiy~r 40 (64)
T 1nla_A 19 LDLVRKVAEENGRSVNSEIYQR 40 (64)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999998186303999999
Done!