Query gi|254781142|ref|YP_003065555.1| hypothetical protein CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 82
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:36:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781142.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u9pa1 a.43.1.1 (A:72-107) Ar 8.2 64 0.0047 12.4 1.7 23 54-76 3-25 (36)
2 d1k82a1 a.156.1.2 (A:129-216) 3.2 1.4E+02 0.01 10.6 2.1 18 27-44 15-33 (88)
3 d2gycu1 b.84.4.1 (U:1-84) Ribo 3.1 1.4E+02 0.01 10.6 0.2 13 63-75 48-60 (84)
4 d1a7ge_ d.58.8.1 (E:) Papillom 2.8 1.4E+02 0.01 10.6 0.0 22 33-54 1-22 (82)
5 d1v8qa_ b.84.4.1 (A:) Ribosoma 2.8 1.1E+02 0.0083 11.1 -0.5 14 63-76 30-43 (66)
6 d2qrda1 d.129.6.2 (A:450-576) 2.7 1.6E+02 0.012 10.3 1.2 16 51-66 110-125 (127)
7 d1ee8a1 a.156.1.2 (A:122-210) 2.5 1.7E+02 0.012 10.2 1.6 15 30-44 18-33 (89)
8 d1tdza1 a.156.1.2 (A:132-219) 2.4 1.8E+02 0.013 10.1 1.9 15 30-44 18-33 (88)
9 d1iioa_ a.39.4.1 (A:) Hypothet 2.3 1.8E+02 0.013 10.1 2.3 23 19-41 9-31 (84)
10 d2zjrt1 b.84.4.1 (T:2-85) Ribo 2.3 1.7E+02 0.012 10.2 -0.2 10 65-74 50-59 (84)
No 1
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=8.19 E-value=64 Score=12.40 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999997257765014431
Q gi|254781142|r 54 FLHMIRTLIDQVGMGKNRRIYKK 76 (82)
Q Consensus 54 flhmirtlidqvgmgknrriykk 76 (82)
.|..+|.....-||.-|..||..
T Consensus 3 vldlvrkvaeeng~s~ns~iy~~ 25 (36)
T d1u9pa1 3 VLDLVRKVAEENGRSVNSEIYQR 25 (36)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 89999999998286141999999
No 2
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=3.23 E-value=1.4e+02 Score=10.65 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=9.2
Q ss_pred HHHHHCCCCCHH-HHCCCC
Q ss_conf 999862776314-301254
Q gi|254781142|r 27 ITVLKNARVPIK-ILMGQR 44 (82)
Q Consensus 27 itvlknarvpik-ilmgqr 44 (82)
...+++.+.||| .||.|+
T Consensus 15 ~~~l~~~~~~ik~~LlDQ~ 33 (88)
T d1k82a1 15 HQKCAKKKTAIKPWLMDNK 33 (88)
T ss_dssp HHHHTTCCSBHHHHHTCTT
T ss_pred HHHHHCCCCHHHHHHHCCC
T ss_conf 9998668851899997053
No 3
>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}
Probab=3.06 E-value=1.4e+02 Score=10.61 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=9.0
Q ss_pred HHHCCCCCCHHHH
Q ss_conf 9725776501443
Q gi|254781142|r 63 DQVGMGKNRRIYK 75 (82)
Q Consensus 63 dqvgmgknrriyk 75 (82)
+.||||++--+|-
T Consensus 48 ~nVg~GkD~TLfA 60 (84)
T d2gycu1 48 ANVGCGRDHTLFA 60 (84)
T ss_dssp CCSSSCCCCCCCC
T ss_pred CCEEECCCCEEEE
T ss_conf 8740567880988
No 4
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=2.85 E-value=1.4e+02 Score=10.60 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=16.3
Q ss_pred CCCCHHHHCCCCCHHHHHHHHH
Q ss_conf 7763143012541457999999
Q gi|254781142|r 33 ARVPIKILMGQRNQLTMIKFLF 54 (82)
Q Consensus 33 arvpikilmgqrnqltmikflf 54 (82)
|-.|+-+|-|.-|||--..|-+
T Consensus 1 a~~Pvi~lkG~~N~LKC~RyRl 22 (82)
T d1a7ge_ 1 ATTPIIHLKGDANILKCLRYRL 22 (82)
T ss_dssp CEEEEEEEEECHHHHHHHHHHG
T ss_pred CCCCEEEEEECCCCCCCHHHHH
T ss_conf 9998999997987411665556
No 5
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}
Probab=2.79 E-value=1.1e+02 Score=11.10 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=9.3
Q ss_pred HHHCCCCCCHHHHH
Q ss_conf 97257765014431
Q gi|254781142|r 63 DQVGMGKNRRIYKK 76 (82)
Q Consensus 63 dqvgmgknrriykk 76 (82)
+.|||||+-.+|.+
T Consensus 30 ~nVg~GkD~TLfAl 43 (66)
T d1v8qa_ 30 KNVGMGRDFTLFAL 43 (66)
T ss_dssp TTEEECTTCCEEES
T ss_pred CCEEECCCCCEEEE
T ss_conf 87506578819996
No 6
>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=2.74 E-value=1.6e+02 Score=10.35 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999999725
Q gi|254781142|r 51 KFLFLHMIRTLIDQVG 66 (82)
Q Consensus 51 kflflhmirtlidqvg 66 (82)
-|.||+|.-.||-|..
T Consensus 110 ~~pFldl~a~LI~qL~ 125 (127)
T d2qrda1 110 SFPFLDLCAMLVCKLF 125 (127)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 7449999999999986
No 7
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=2.50 E-value=1.7e+02 Score=10.18 Aligned_cols=15 Identities=47% Similarity=0.829 Sum_probs=6.5
Q ss_pred HHCCCCCHH-HHCCCC
Q ss_conf 862776314-301254
Q gi|254781142|r 30 LKNARVPIK-ILMGQR 44 (82)
Q Consensus 30 lknarvpik-ilmgqr 44 (82)
+++.+.||| .||.|+
T Consensus 18 l~~~~~~ik~~LlDQ~ 33 (89)
T d1ee8a1 18 LKESARPLKALLLDQR 33 (89)
T ss_dssp HHTCCSBHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHCC
T ss_conf 8638872899998554
No 8
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=2.35 E-value=1.8e+02 Score=10.07 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=6.0
Q ss_pred HHCCCCCHH-HHCCCC
Q ss_conf 862776314-301254
Q gi|254781142|r 30 LKNARVPIK-ILMGQR 44 (82)
Q Consensus 30 lknarvpik-ilmgqr 44 (82)
+++.+.||| .||-|+
T Consensus 18 l~~~~~~ik~~LldQ~ 33 (88)
T d1tdza1 18 LRKSTKKIKPYLLEQT 33 (88)
T ss_dssp HHHCCSBHHHHHHTSS
T ss_pred HHCCCCCHHHHHHHCC
T ss_conf 8726650899998554
No 9
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.35 E-value=1.8e+02 Score=10.07 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHC
Q ss_conf 87789999999862776314301
Q gi|254781142|r 19 RQSLGSLLITVLKNARVPIKILM 41 (82)
Q Consensus 19 rqslgsllitvlknarvpikilm 41 (82)
+..+-+-++..+++|..||+--|
T Consensus 9 keei~~qi~~af~gA~FPI~s~~ 31 (84)
T d1iioa_ 9 KEDIRGQIIGALAGADFPINSPE 31 (84)
T ss_dssp HHHHHHHHHHHHTTSSSTTBHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99999999999717888889999
No 10
>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.26 E-value=1.7e+02 Score=10.24 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=0.0
Q ss_pred HCCCCCCHHH
Q ss_conf 2577650144
Q gi|254781142|r 65 VGMGKNRRIY 74 (82)
Q Consensus 65 vgmgknrriy 74 (82)
||||++.-||
T Consensus 50 Vg~GkD~TLf 59 (84)
T d2zjrt1 50 VGMGRDHTLF 59 (84)
T ss_dssp EECCTTSCEE
T ss_pred CCCCCCCCEE
T ss_conf 2336888688
Done!