RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781142|ref|YP_003065555.1| hypothetical protein CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62] (82 letters) >d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 292 Score = 24.8 bits (54), Expect = 1.9 Identities = 9/36 (25%), Positives = 13/36 (36%) Query: 5 ESSFADMERHIINRRQSLGSLLITVLKNARVPIKIL 40 E+ ER + RRQ L L +P + Sbjct: 21 ETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDY 56 >d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Carboxydothermus hydrogenoformans [TaxId: 129958]} Length = 633 Score = 22.5 bits (48), Expect = 9.7 Identities = 5/14 (35%), Positives = 6/14 (42%) Query: 10 DMERHIINRRQSLG 23 + I RR LG Sbjct: 617 KLLAAINERRAGLG 630 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.140 0.379 Gapped Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 269,621 Number of extensions: 9881 Number of successful extensions: 29 Number of sequences better than 10.0: 1 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 3 Length of query: 82 Length of database: 2,407,596 Length adjustment: 48 Effective length of query: 34 Effective length of database: 1,748,556 Effective search space: 59450904 Effective search space used: 59450904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 47 (22.7 bits)