BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781142|ref|YP_003065555.1| hypothetical protein
CLIBASIA_05230 [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781142|ref|YP_003065555.1| hypothetical protein CLIBASIA_05230 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 82

 Score =  163 bits (413), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MIKSESSFADMERHIINRRQSLGSLLITVLKNARVPIKILMGQRNQLTMIKFLFLHMIRT 60
          MIKSESSFADMERHIINRRQSLGSLLITVLKNARVPIKILMGQRNQLTMIKFLFLHMIRT
Sbjct: 1  MIKSESSFADMERHIINRRQSLGSLLITVLKNARVPIKILMGQRNQLTMIKFLFLHMIRT 60

Query: 61 LIDQVGMGKNRRIYKKNRSNIL 82
          LIDQVGMGKNRRIYKKNRSNIL
Sbjct: 61 LIDQVGMGKNRRIYKKNRSNIL 82


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 26  LITVLKNARVPIKILMGQRNQLTMIKFLFLHMIRTLIDQ 64
           L++  +N  VPI     ++ ++ + K +   +I+T  DQ
Sbjct: 495 LLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQ 533


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.140    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,062
Number of Sequences: 1233
Number of extensions: 1442
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 82
length of database: 328,796
effective HSP length: 51
effective length of query: 31
effective length of database: 265,913
effective search space:  8243303
effective search space used:  8243303
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)