Query         gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:14:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781143.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2w6a_A ARF GTPase-activating   23.6      56  0.0017   15.4   2.4   29    5-33     26-54  (63)
  2 >1hcu_A Alpha-1,2-mannosidase;   7.9 1.7E+02  0.0049   13.2   1.2   12   21-32     16-27  (70)
  3 >1x9d_A Endoplasmic reticulum    7.6 1.9E+02  0.0057   12.9   1.5   12   21-32      5-16  (58)
  4 >1dl2_A Class I alpha-1,2-mann   6.7 2.2E+02  0.0064   12.7   1.5   12   21-32      8-19  (54)
  5 >2kk7_A V-type ATP synthase su   5.1 2.8E+02  0.0082   12.2   2.0   26    3-28     16-41  (52)
  6 >1yar_O Proteasome activator p   4.3 3.2E+02  0.0094   11.9   2.0   20   14-33    187-206 (237)
  7 >1q4g_A Prostaglandin G/H synt   4.0   3E+02  0.0089   12.0   0.6   20   13-32     19-38  (119)
  8 >2pbi_A Regulator of G-protein   3.9 3.5E+02    0.01   11.7   1.5   13   21-33     11-23  (60)
  9 >3g36_A Protein DPY-30 homolog   3.9 3.5E+02    0.01   11.7   1.6   13   20-32     40-52  (55)
 10 >1v7w_A Chitobiose phosphoryla   3.3 3.3E+02  0.0098   11.8   0.3    6    9-14     15-20  (59)

No 1  
>>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:)
Probab=23.62  E-value=56  Score=15.36  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32112331034543108999999765531
Q gi|254781143|r    5 RAKIQAEINIKKQQADAEYLLKKKLQSQQ   33 (35)
Q Consensus         5 rakiqaeinikkqqadaeyllkkklqsqq   33 (35)
                      .||||--++..++..|.--++.+++++-|
T Consensus        26 EakiQqLmkvN~nls~Elr~lQ~~~~~Lq   54 (63)
T 2w6a_A           26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ   54 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999997877599999999999999


No 2  
>>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} (A:233-302)
Probab=7.93  E-value=1.7e+02  Score=13.19  Aligned_cols=12  Identities=42%  Similarity=0.509  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999976553
Q gi|254781143|r   21 AEYLLKKKLQSQ   32 (35)
Q Consensus        21 aeyllkkklqsq   32 (35)
                      -|||+|--+++-
T Consensus        16 YEYLlK~~il~g   27 (70)
T 1hcu_A           16 YEYLIKMYLYDP   27 (70)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999997467


No 3  
>>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} (A:301-336,A:517-538)
Probab=7.61  E-value=1.9e+02  Score=12.90  Aligned_cols=12  Identities=50%  Similarity=0.648  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999976553
Q gi|254781143|r   21 AEYLLKKKLQSQ   32 (35)
Q Consensus        21 aeyllkkklqsq   32 (35)
                      -|||+|--+++.
T Consensus         5 YEYLlKqylLlG   16 (58)
T 1x9d_A            5 YEYLLKQWIQGG   16 (58)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998627


No 4  
>>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:238-274,A:479-495)
Probab=6.74  E-value=2.2e+02  Score=12.68  Aligned_cols=12  Identities=50%  Similarity=0.692  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999976553
Q gi|254781143|r   21 AEYLLKKKLQSQ   32 (35)
Q Consensus        21 aeyllkkklqsq   32 (35)
                      -|||+|--+++.
T Consensus         8 YEYLlK~~illG   19 (54)
T 1dl2_A            8 YEYLLKQYLLTH   19 (54)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCC
T ss_conf             778888887278


No 5  
>>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:)
Probab=5.08  E-value=2.8e+02  Score=12.18  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=17.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11321123310345431089999997
Q gi|254781143|r    3 LKRAKIQAEINIKKQQADAEYLLKKK   28 (35)
Q Consensus         3 lkrakiqaeinikkqqadaeyllkkk   28 (35)
                      |..|+++|.--|..-|...+-+|+|-
T Consensus        16 leDA~~~A~kI~sEAekEk~~il~KA   41 (52)
T 2kk7_A           16 LDDAKAEANKIISEAEAEKAKILEKA   41 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99888689999989998899999998


No 6  
>>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Trypanosoma brucei} (O:)
Probab=4.31  E-value=3.2e+02  Score=11.90  Aligned_cols=20  Identities=30%  Similarity=0.604  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             34543108999999765531
Q gi|254781143|r   14 IKKQQADAEYLLKKKLQSQQ   33 (35)
Q Consensus        14 ikkqqadaeyllkkklqsqq   33 (35)
                      ..-||-|+..|||-.|..-|
T Consensus       187 lEL~QiDaDallKvELsa~q  206 (237)
T 1yar_O          187 LELRQIDADFMLKVELATTH  206 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHHHHH
T ss_conf             99996168999998899999


No 7  
>>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} (A:117-157,A:407-484)
Probab=4.03  E-value=3e+02  Score=12.01  Aligned_cols=20  Identities=40%  Similarity=0.461  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             03454310899999976553
Q gi|254781143|r   13 NIKKQQADAEYLLKKKLQSQ   32 (35)
Q Consensus        13 nikkqqadaeyllkkklqsq   32 (35)
                      .-|||-.|+|+|..+-+-..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~   38 (119)
T 1q4g_A           19 KGKKQLPDAEFLSRRFLLRR   38 (119)
T ss_dssp             SSCSSCCCHHHHHHHHTBCS
T ss_pred             CCCCCCCCHHHHHHHHHCCC
T ss_conf             78898929899999982668


No 8  
>>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} (A:114-173)
Probab=3.90  E-value=3.5e+02  Score=11.73  Aligned_cols=13  Identities=31%  Similarity=0.562  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999765531
Q gi|254781143|r   21 AEYLLKKKLQSQQ   33 (35)
Q Consensus        21 aeyllkkklqsqq   33 (35)
                      |.||-|+.++.+.
T Consensus        11 AIYL~KR~~rnk~   23 (60)
T 2pbi_A           11 AIYLAKRNIKKKG   23 (60)
T ss_dssp             HHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999876054


No 9  
>>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens} (A:)
Probab=3.89  E-value=3.5e+02  Score=11.73  Aligned_cols=13  Identities=54%  Similarity=0.565  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             0899999976553
Q gi|254781143|r   20 DAEYLLKKKLQSQ   32 (35)
Q Consensus        20 daeyllkkklqsq   32 (35)
                      =|+||++.+-+.+
T Consensus        40 La~~Ll~~~~~~~   52 (55)
T 3g36_A           40 LASYLLKNKAQFE   52 (55)
T ss_dssp             HHHHHHHHGGGGT
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9999987291234


No 10 
>>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} (A:310-337,A:710-740)
Probab=3.31  E-value=3.3e+02  Score=11.83  Aligned_cols=6  Identities=50%  Similarity=0.523  Sum_probs=0.0

Q ss_pred             HHHHHH
Q ss_conf             233103
Q gi|254781143|r    9 QAEINI   14 (35)
Q Consensus         9 qaeini   14 (35)
                      |||+|+
T Consensus        15 qae~~~   20 (59)
T 1v7w_A           15 QAETCV   20 (59)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             677650


Done!