Query gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 35 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:14:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781143.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2w6a_A ARF GTPase-activating 23.6 56 0.0017 15.4 2.4 29 5-33 26-54 (63) 2 >1hcu_A Alpha-1,2-mannosidase; 7.9 1.7E+02 0.0049 13.2 1.2 12 21-32 16-27 (70) 3 >1x9d_A Endoplasmic reticulum 7.6 1.9E+02 0.0057 12.9 1.5 12 21-32 5-16 (58) 4 >1dl2_A Class I alpha-1,2-mann 6.7 2.2E+02 0.0064 12.7 1.5 12 21-32 8-19 (54) 5 >2kk7_A V-type ATP synthase su 5.1 2.8E+02 0.0082 12.2 2.0 26 3-28 16-41 (52) 6 >1yar_O Proteasome activator p 4.3 3.2E+02 0.0094 11.9 2.0 20 14-33 187-206 (237) 7 >1q4g_A Prostaglandin G/H synt 4.0 3E+02 0.0089 12.0 0.6 20 13-32 19-38 (119) 8 >2pbi_A Regulator of G-protein 3.9 3.5E+02 0.01 11.7 1.5 13 21-33 11-23 (60) 9 >3g36_A Protein DPY-30 homolog 3.9 3.5E+02 0.01 11.7 1.6 13 20-32 40-52 (55) 10 >1v7w_A Chitobiose phosphoryla 3.3 3.3E+02 0.0098 11.8 0.3 6 9-14 15-20 (59) No 1 >>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:) Probab=23.62 E-value=56 Score=15.36 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32112331034543108999999765531 Q gi|254781143|r 5 RAKIQAEINIKKQQADAEYLLKKKLQSQQ 33 (35) Q Consensus 5 rakiqaeinikkqqadaeyllkkklqsqq 33 (35) .||||--++..++..|.--++.+++++-| T Consensus 26 EakiQqLmkvN~nls~Elr~lQ~~~~~Lq 54 (63) T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999997877599999999999999 No 2 >>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} (A:233-302) Probab=7.93 E-value=1.7e+02 Score=13.19 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999976553 Q gi|254781143|r 21 AEYLLKKKLQSQ 32 (35) Q Consensus 21 aeyllkkklqsq 32 (35) -|||+|--+++- T Consensus 16 YEYLlK~~il~g 27 (70) T 1hcu_A 16 YEYLIKMYLYDP 27 (70) T ss_dssp HHHHHHHHHHCT T ss_pred HHHHHHHHHHCC T ss_conf 999999997467 No 3 >>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} (A:301-336,A:517-538) Probab=7.61 E-value=1.9e+02 Score=12.90 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999976553 Q gi|254781143|r 21 AEYLLKKKLQSQ 32 (35) Q Consensus 21 aeyllkkklqsq 32 (35) -|||+|--+++. T Consensus 5 YEYLlKqylLlG 16 (58) T 1x9d_A 5 YEYLLKQWIQGG 16 (58) T ss_dssp HHHHHHHHHHTT T ss_pred HHHHHHHHHHCC T ss_conf 999999998627 No 4 >>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:238-274,A:479-495) Probab=6.74 E-value=2.2e+02 Score=12.68 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999976553 Q gi|254781143|r 21 AEYLLKKKLQSQ 32 (35) Q Consensus 21 aeyllkkklqsq 32 (35) -|||+|--+++. T Consensus 8 YEYLlK~~illG 19 (54) T 1dl2_A 8 YEYLLKQYLLTH 19 (54) T ss_dssp HHHHHHHHHHHC T ss_pred HHHHHHHHHHCC T ss_conf 778888887278 No 5 >>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:) Probab=5.08 E-value=2.8e+02 Score=12.18 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=17.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11321123310345431089999997 Q gi|254781143|r 3 LKRAKIQAEINIKKQQADAEYLLKKK 28 (35) Q Consensus 3 lkrakiqaeinikkqqadaeyllkkk 28 (35) |..|+++|.--|..-|...+-+|+|- T Consensus 16 leDA~~~A~kI~sEAekEk~~il~KA 41 (52) T 2kk7_A 16 LDDAKAEANKIISEAEAEKAKILEKA 41 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99888689999989998899999998 No 6 >>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Trypanosoma brucei} (O:) Probab=4.31 E-value=3.2e+02 Score=11.90 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 34543108999999765531 Q gi|254781143|r 14 IKKQQADAEYLLKKKLQSQQ 33 (35) Q Consensus 14 ikkqqadaeyllkkklqsqq 33 (35) ..-||-|+..|||-.|..-| T Consensus 187 lEL~QiDaDallKvELsa~q 206 (237) T 1yar_O 187 LELRQIDADFMLKVELATTH 206 (237) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCHHHHHHHHHHHHH T ss_conf 99996168999998899999 No 7 >>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} (A:117-157,A:407-484) Probab=4.03 E-value=3e+02 Score=12.01 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 03454310899999976553 Q gi|254781143|r 13 NIKKQQADAEYLLKKKLQSQ 32 (35) Q Consensus 13 nikkqqadaeyllkkklqsq 32 (35) .-|||-.|+|+|..+-+-.. T Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (119) T 1q4g_A 19 KGKKQLPDAEFLSRRFLLRR 38 (119) T ss_dssp SSCSSCCCHHHHHHHHTBCS T ss_pred CCCCCCCCHHHHHHHHHCCC T ss_conf 78898929899999982668 No 8 >>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} (A:114-173) Probab=3.90 E-value=3.5e+02 Score=11.73 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8999999765531 Q gi|254781143|r 21 AEYLLKKKLQSQQ 33 (35) Q Consensus 21 aeyllkkklqsqq 33 (35) |.||-|+.++.+. T Consensus 11 AIYL~KR~~rnk~ 23 (60) T 2pbi_A 11 AIYLAKRNIKKKG 23 (60) T ss_dssp HHHHHHHHHTSSS T ss_pred HHHHHHHHHHCCC T ss_conf 9999999876054 No 9 >>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens} (A:) Probab=3.89 E-value=3.5e+02 Score=11.73 Aligned_cols=13 Identities=54% Similarity=0.565 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 0899999976553 Q gi|254781143|r 20 DAEYLLKKKLQSQ 32 (35) Q Consensus 20 daeyllkkklqsq 32 (35) =|+||++.+-+.+ T Consensus 40 La~~Ll~~~~~~~ 52 (55) T 3g36_A 40 LASYLLKNKAQFE 52 (55) T ss_dssp HHHHHHHHGGGGT T ss_pred HHHHHHHCCCCCC T ss_conf 9999987291234 No 10 >>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} (A:310-337,A:710-740) Probab=3.31 E-value=3.3e+02 Score=11.83 Aligned_cols=6 Identities=50% Similarity=0.523 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 233103 Q gi|254781143|r 9 QAEINI 14 (35) Q Consensus 9 qaeini 14 (35) |||+|+ T Consensus 15 qae~~~ 20 (59) T 1v7w_A 15 QAETCV 20 (59) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 677650 Done!