Query         gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 01:15:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781143.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2w6a_A ARF GTPase-activating p  23.1      41  0.0017   15.3   2.4   29    5-33     26-54  (63)
  2 2kk7_A V-type ATP synthase sub   8.8 1.2E+02   0.005   13.2   2.0   26    3-28     16-41  (52)
  3 1yar_O Proteasome activator pr   4.3 2.2E+02  0.0094   11.9   2.0   20   14-33    187-206 (237)
  4 2k84_A P9; HOST-virus interact   3.9 1.8E+02  0.0077   12.3   0.2   13    6-18      6-18  (30)
  5 2a26_A Calcyclin-binding prote   3.5 2.7E+02   0.011   11.6   0.7   11    7-17     38-48  (50)
  6 1ysm_A Calcyclin-binding prote   3.1 2.9E+02   0.012   11.4   0.6   14    5-18     35-48  (77)
  7 3lcn_C MRNA transport factor G   2.3 3.7E+02   0.016   10.9   1.7   15   19-33      5-19  (29)
  8 1l4a_E Synaphin A; snare, snar   2.2 3.2E+02   0.014   11.2  -0.1   26    4-29     35-60  (79)
  9 2v52_M MKL/myocardin-like prot   1.9 4.5E+02   0.019   10.5   0.3   13   19-31      2-14  (32)
 10 2elm_A Zinc finger protein 406   1.9 4.2E+02   0.018   10.6   0.1   12    3-14     25-36  (37)

No 1  
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.10  E-value=41  Score=15.29  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32112331034543108999999765531
Q gi|254781143|r    5 RAKIQAEINIKKQQADAEYLLKKKLQSQQ   33 (35)
Q Consensus         5 rakiqaeinikkqqadaeyllkkklqsqq   33 (35)
                      .||||--++..++..|.--++.+++++-|
T Consensus        26 EakIQqLmkvN~~ls~Elr~mQ~~~~~Lq   54 (63)
T 2w6a_A           26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ   54 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999997867699999999999999


No 2  
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=8.84  E-value=1.2e+02  Score=13.17  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=18.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11321123310345431089999997
Q gi|254781143|r    3 LKRAKIQAEINIKKQQADAEYLLKKK   28 (35)
Q Consensus         3 lkrakiqaeinikkqqadaeyllkkk   28 (35)
                      |..|+++|..-+..-|...+-+|+|-
T Consensus        16 leDA~~~A~kI~~EAqkEk~~il~KA   41 (52)
T 2kk7_A           16 LDDAKAEANKIISEAEAEKAKILEKA   41 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99888689999989998899999998


No 3  
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Probab=4.32  E-value=2.2e+02  Score=11.90  Aligned_cols=20  Identities=30%  Similarity=0.604  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             34543108999999765531
Q gi|254781143|r   14 IKKQQADAEYLLKKKLQSQQ   33 (35)
Q Consensus        14 ikkqqadaeyllkkklqsqq   33 (35)
                      ..-||-|+..|||-.|..-|
T Consensus       187 lEL~QiDaDallKvELsa~q  206 (237)
T 1yar_O          187 LELRQIDADFMLKVELATTH  206 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHHHHH
T ss_conf             99996168999998899999


No 4  
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=3.92  E-value=1.8e+02  Score=12.30  Aligned_cols=13  Identities=31%  Similarity=0.616  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             2112331034543
Q gi|254781143|r    6 AKIQAEINIKKQQ   18 (35)
Q Consensus         6 akiqaeinikkqq   18 (35)
                      .+++.|.|||.|+
T Consensus         6 sqmkqEY~vk~q~   18 (30)
T 2k84_A            6 SEIKKEYNVKEKD   18 (30)
T ss_dssp             CSSSHHHHHTTTT
T ss_pred             HHHHHHHCHHHHH
T ss_conf             9999996514441


No 5  
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=3.47  E-value=2.7e+02  Score=11.56  Aligned_cols=11  Identities=55%  Similarity=0.594  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q ss_conf             11233103454
Q gi|254781143|r    7 KIQAEINIKKQ   17 (35)
Q Consensus         7 kiqaeinikkq   17 (35)
                      ||+.||.-|-|
T Consensus        38 kietEIknk~q   48 (50)
T 2a26_A           38 KIETEIKNKMQ   48 (50)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999988873


No 6  
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=3.06  E-value=2.9e+02  Score=11.37  Aligned_cols=14  Identities=43%  Similarity=0.593  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             32112331034543
Q gi|254781143|r    5 RAKIQAEINIKKQQ   18 (35)
Q Consensus         5 rakiqaeinikkqq   18 (35)
                      .-||+.||.-|.||
T Consensus        35 k~KiEtEI~~k~qq   48 (77)
T 1ysm_A           35 KSKIETELKNKMQQ   48 (77)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999987642


No 7  
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=2.35  E-value=3.7e+02  Score=10.88  Aligned_cols=15  Identities=47%  Similarity=0.554  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             108999999765531
Q gi|254781143|r   19 ADAEYLLKKKLQSQQ   33 (35)
Q Consensus        19 adaeyllkkklqsqq   33 (35)
                      |..--|||||...|.
T Consensus         5 askmkllkkkieeqr   19 (29)
T 3lcn_C            5 ASKMKLLKKKIEEQR   19 (29)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             899999999999999


No 8  
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=2.17  E-value=3.2e+02  Score=11.18  Aligned_cols=26  Identities=35%  Similarity=0.419  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13211233103454310899999976
Q gi|254781143|r    4 KRAKIQAEINIKKQQADAEYLLKKKL   29 (35)
Q Consensus         4 krakiqaeinikkqqadaeyllkkkl   29 (35)
                      |.+|+.+|-..-.|.--..|-+|||.
T Consensus        35 kh~kmE~eRE~mRq~IRdKYgikKkv   60 (79)
T 1l4a_E           35 KHRKMEEEREEMRQTIRDKYGLKKKV   60 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989999999999899985225776


No 9  
>2v52_M MKL/myocardin-like protein 1; structural protein/contractIle protein, structural protein, contractIle protein, nucleotide-binding; HET: LAB ATP; 1.45A {Mus musculus}
Probab=1.89  E-value=4.5e+02  Score=10.52  Aligned_cols=13  Identities=46%  Similarity=0.593  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1089999997655
Q gi|254781143|r   19 ADAEYLLKKKLQS   31 (35)
Q Consensus        19 adaeyllkkklqs   31 (35)
                      |..|-.||.|+.|
T Consensus         2 arte~~lk~kirs   14 (32)
T 2v52_M            2 ARTEDYLKRKIRS   14 (32)
T ss_dssp             CSCSHHHHHHHHT
T ss_pred             CCHHHHHHHHHHC
T ss_conf             3278899999864


No 10 
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.87  E-value=4.2e+02  Score=10.65  Aligned_cols=12  Identities=58%  Similarity=0.614  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             113211233103
Q gi|254781143|r    3 LKRAKIQAEINI   14 (35)
Q Consensus         3 lkrakiqaeini   14 (35)
                      |||.-||..-||
T Consensus        25 lkrhviqkhs~i   36 (37)
T 2elm_A           25 LKRHVIQKHSNI   36 (37)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999875335


Done!