Query         gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:28:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781143.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1aqta1 a.2.10.1 (A:87-136) Ep   7.9      55   0.004   13.6   0.7   21    5-25     10-30  (50)
  2 d1yaro1 a.24.8.1 (O:4-231) Pro   4.0 1.4E+02    0.01   11.8   2.0   20   14-33    178-197 (228)
  3 d2a26a1 a.2.16.1 (A:1-47) Calc   2.8 1.9E+02   0.014   11.2   0.8   10    7-16     35-44  (47)
  4 d1wgwa_ a.24.13.1 (A:) Signal    1.9 2.4E+02   0.018   10.7   0.1   14    2-15     38-51  (99)
  5 d3cx5b2 d.185.1.1 (B:219-368)    1.8 2.7E+02   0.019   10.5   0.7   14   11-24     95-108 (150)
  6 d1j8yf1 a.24.13.1 (F:3-86) Sig   1.6 2.9E+02   0.021   10.3   0.1   14    2-15     29-42  (84)
  7 d1ls1a1 a.24.13.1 (A:1-88) Sig   1.6   3E+02   0.022   10.2   0.1   14    2-15     33-46  (88)
  8 d2clya1 f.52.1.1 (A:79-183) AT   1.2 3.8E+02   0.028    9.7   2.6   27    6-32     54-80  (105)
  9 d1cuka1 a.5.1.1 (A:156-203) DN   1.2 3.9E+02   0.028    9.7   1.0   18   14-31     29-46  (48)
 10 d1skva_ a.30.5.1 (A:) Hypothet   1.1 4.4E+02   0.032    9.5   0.3    6    7-12     50-55  (64)

No 1  
>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.85  E-value=55  Score=13.63  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             321123310345431089999
Q gi|254781143|r    5 RAKIQAEINIKKQQADAEYLL   25 (35)
Q Consensus         5 rakiqaeinikkqqadaeyll   25 (35)
                      .||-.||-.+..++.|.+|--
T Consensus        10 eAk~~AEe~l~~~~~d~dy~~   30 (50)
T d1aqta1          10 EAKRKAEEHISSSHGDVDYAQ   30 (50)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHH
T ss_conf             999999999874764034999


No 2  
>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26 {Trypanosoma brucei [TaxId: 5691]}
Probab=4.00  E-value=1.4e+02  Score=11.77  Aligned_cols=20  Identities=30%  Similarity=0.604  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             34543108999999765531
Q gi|254781143|r   14 IKKQQADAEYLLKKKLQSQQ   33 (35)
Q Consensus        14 ikkqqadaeyllkkklqsqq   33 (35)
                      ..-||-|+..|||-.|..-|
T Consensus       178 lEL~QiDaDallKvELsa~q  197 (228)
T d1yaro1         178 LELRQIDADFMLKVELATTH  197 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHHHHH
T ss_conf             99996168999998999999


No 3  
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.80  E-value=1.9e+02  Score=11.17  Aligned_cols=10  Identities=50%  Similarity=0.564  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q ss_conf             1123310345
Q gi|254781143|r    7 KIQAEINIKK   16 (35)
Q Consensus         7 kiqaeinikk   16 (35)
                      ||+.||.-+-
T Consensus        35 kletEik~k~   44 (47)
T d2a26a1          35 KIETEIKNKM   44 (47)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999998887


No 4  
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.87  E-value=2.4e+02  Score=10.66  Aligned_cols=14  Identities=43%  Similarity=0.629  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             51132112331034
Q gi|254781143|r    2 ELKRAKIQAEINIK   15 (35)
Q Consensus         2 elkrakiqaeinik   15 (35)
                      |+.+|-++|.+|++
T Consensus        38 eI~~ALLeADVn~~   51 (99)
T d1wgwa_          38 EVCTALLEADVNIK   51 (99)
T ss_dssp             HHHHHHHTTTCCHH
T ss_pred             HHHHHHHHCCCCHH
T ss_conf             99999887458889


No 5  
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.81  E-value=2.7e+02  Score=10.46  Aligned_cols=14  Identities=0%  Similarity=-0.026  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             31034543108999
Q gi|254781143|r   11 EINIKKQQADAEYL   24 (35)
Q Consensus        11 einikkqqadaeyl   24 (35)
                      |+.--|.|+-+.+|
T Consensus        95 el~rAk~~lK~~~l  108 (150)
T d3cx5b2          95 DLSPAINYTKLKNA  108 (150)
T ss_dssp             ECGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 6  
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=1.62  E-value=2.9e+02  Score=10.31  Aligned_cols=14  Identities=43%  Similarity=0.793  Sum_probs=7.5

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             51132112331034
Q gi|254781143|r    2 ELKRAKIQAEINIK   15 (35)
Q Consensus         2 elkrakiqaeinik   15 (35)
                      |+++|-++|..|.+
T Consensus        29 eIr~ALLeADVn~~   42 (84)
T d1j8yf1          29 ELQKSLISADVNVK   42 (84)
T ss_dssp             HHHHHHHHTTCCHH
T ss_pred             HHHHHHHHCCCCHH
T ss_conf             99999986565799


No 7  
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=1.56  E-value=3e+02  Score=10.23  Aligned_cols=14  Identities=36%  Similarity=0.798  Sum_probs=7.8

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             51132112331034
Q gi|254781143|r    2 ELKRAKIQAEINIK   15 (35)
Q Consensus         2 elkrakiqaeinik   15 (35)
                      |++||-+.|..|.+
T Consensus        33 eir~ALLeADV~l~   46 (88)
T d1ls1a1          33 EIRRALMDADVNLE   46 (88)
T ss_dssp             HHHHHHHHTTCCHH
T ss_pred             HHHHHHHHCCCCHH
T ss_conf             99999998455789


No 8  
>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.21  E-value=3.8e+02  Score=9.72  Aligned_cols=27  Identities=11%  Similarity=0.182  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             211233103454310899999976553
Q gi|254781143|r    6 AKIQAEINIKKQQADAEYLLKKKLQSQ   32 (35)
Q Consensus         6 akiqaeinikkqqadaeyllkkklqsq   32 (35)
                      +.+|.|+...++.....--.|+.|.+|
T Consensus        54 valqlEa~yrerl~~v~~evK~rLDy~   80 (105)
T d2clya1          54 IAMALEVTYRERLHRVYREVKNRLDYH   80 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998899999998999999999988999


No 9  
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=1.20  E-value=3.9e+02  Score=9.69  Aligned_cols=18  Identities=28%  Similarity=0.549  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             345431089999997655
Q gi|254781143|r   14 IKKQQADAEYLLKKKLQS   31 (35)
Q Consensus        14 ikkqqadaeyllkkklqs   31 (35)
                      +.+...+.|-++|.-|++
T Consensus        29 i~~~~~s~E~lIk~ALk~   46 (48)
T d1cuka1          29 IARPDASSETLIREALRA   46 (48)
T ss_dssp             SCCSSCCHHHHHHHHHHT
T ss_pred             HCCCCCCHHHHHHHHHHH
T ss_conf             637999999999999998


No 10 
>d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=1.09  E-value=4.4e+02  Score=9.46  Aligned_cols=6  Identities=67%  Similarity=0.983  Sum_probs=0.0

Q ss_pred             HHHHHH
Q ss_conf             112331
Q gi|254781143|r    7 KIQAEI   12 (35)
Q Consensus         7 kiqaei   12 (35)
                      |||||.
T Consensus        50 kIqaEL   55 (64)
T d1skva_          50 KIEAEL   55 (64)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


Done!