Query gi|254781143|ref|YP_003065556.1| hypothetical protein CLIBASIA_05235 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 35 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:28:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781143.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1aqta1 a.2.10.1 (A:87-136) Ep 7.9 55 0.004 13.6 0.7 21 5-25 10-30 (50) 2 d1yaro1 a.24.8.1 (O:4-231) Pro 4.0 1.4E+02 0.01 11.8 2.0 20 14-33 178-197 (228) 3 d2a26a1 a.2.16.1 (A:1-47) Calc 2.8 1.9E+02 0.014 11.2 0.8 10 7-16 35-44 (47) 4 d1wgwa_ a.24.13.1 (A:) Signal 1.9 2.4E+02 0.018 10.7 0.1 14 2-15 38-51 (99) 5 d3cx5b2 d.185.1.1 (B:219-368) 1.8 2.7E+02 0.019 10.5 0.7 14 11-24 95-108 (150) 6 d1j8yf1 a.24.13.1 (F:3-86) Sig 1.6 2.9E+02 0.021 10.3 0.1 14 2-15 29-42 (84) 7 d1ls1a1 a.24.13.1 (A:1-88) Sig 1.6 3E+02 0.022 10.2 0.1 14 2-15 33-46 (88) 8 d2clya1 f.52.1.1 (A:79-183) AT 1.2 3.8E+02 0.028 9.7 2.6 27 6-32 54-80 (105) 9 d1cuka1 a.5.1.1 (A:156-203) DN 1.2 3.9E+02 0.028 9.7 1.0 18 14-31 29-46 (48) 10 d1skva_ a.30.5.1 (A:) Hypothet 1.1 4.4E+02 0.032 9.5 0.3 6 7-12 50-55 (64) No 1 >d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]} Probab=7.85 E-value=55 Score=13.63 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 321123310345431089999 Q gi|254781143|r 5 RAKIQAEINIKKQQADAEYLL 25 (35) Q Consensus 5 rakiqaeinikkqqadaeyll 25 (35) .||-.||-.+..++.|.+|-- T Consensus 10 eAk~~AEe~l~~~~~d~dy~~ 30 (50) T d1aqta1 10 EAKRKAEEHISSSHGDVDYAQ 30 (50) T ss_dssp HHHHHHHHHHTTCSSSHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHH T ss_conf 999999999874764034999 No 2 >d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26 {Trypanosoma brucei [TaxId: 5691]} Probab=4.00 E-value=1.4e+02 Score=11.77 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 34543108999999765531 Q gi|254781143|r 14 IKKQQADAEYLLKKKLQSQQ 33 (35) Q Consensus 14 ikkqqadaeyllkkklqsqq 33 (35) ..-||-|+..|||-.|..-| T Consensus 178 lEL~QiDaDallKvELsa~q 197 (228) T d1yaro1 178 LELRQIDADFMLKVELATTH 197 (228) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCHHHHHHHHHHHHH T ss_conf 99996168999998999999 No 3 >d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]} Probab=2.80 E-value=1.9e+02 Score=11.17 Aligned_cols=10 Identities=50% Similarity=0.564 Sum_probs=3.7 Q ss_pred HHHHHHHHHH Q ss_conf 1123310345 Q gi|254781143|r 7 KIQAEINIKK 16 (35) Q Consensus 7 kiqaeinikk 16 (35) ||+.||.-+- T Consensus 35 kletEik~k~ 44 (47) T d2a26a1 35 KIETEIKNKM 44 (47) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999998887 No 4 >d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]} Probab=1.87 E-value=2.4e+02 Score=10.66 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=7.3 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 51132112331034 Q gi|254781143|r 2 ELKRAKIQAEINIK 15 (35) Q Consensus 2 elkrakiqaeinik 15 (35) |+.+|-++|.+|++ T Consensus 38 eI~~ALLeADVn~~ 51 (99) T d1wgwa_ 38 EVCTALLEADVNIK 51 (99) T ss_dssp HHHHHHHTTTCCHH T ss_pred HHHHHHHHCCCCHH T ss_conf 99999887458889 No 5 >d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=1.81 E-value=2.7e+02 Score=10.46 Aligned_cols=14 Identities=0% Similarity=-0.026 Sum_probs=4.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 31034543108999 Q gi|254781143|r 11 EINIKKQQADAEYL 24 (35) Q Consensus 11 einikkqqadaeyl 24 (35) |+.--|.|+-+.+| T Consensus 95 el~rAk~~lK~~~l 108 (150) T d3cx5b2 95 DLSPAINYTKLKNA 108 (150) T ss_dssp ECGGGHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 6 >d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Probab=1.62 E-value=2.9e+02 Score=10.31 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=7.5 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 51132112331034 Q gi|254781143|r 2 ELKRAKIQAEINIK 15 (35) Q Consensus 2 elkrakiqaeinik 15 (35) |+++|-++|..|.+ T Consensus 29 eIr~ALLeADVn~~ 42 (84) T d1j8yf1 29 ELQKSLISADVNVK 42 (84) T ss_dssp HHHHHHHHTTCCHH T ss_pred HHHHHHHHCCCCHH T ss_conf 99999986565799 No 7 >d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Probab=1.56 E-value=3e+02 Score=10.23 Aligned_cols=14 Identities=36% Similarity=0.798 Sum_probs=7.8 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 51132112331034 Q gi|254781143|r 2 ELKRAKIQAEINIK 15 (35) Q Consensus 2 elkrakiqaeinik 15 (35) |++||-+.|..|.+ T Consensus 33 eir~ALLeADV~l~ 46 (88) T d1ls1a1 33 EIRRALMDADVNLE 46 (88) T ss_dssp HHHHHHHHTTCCHH T ss_pred HHHHHHHHCCCCHH T ss_conf 99999998455789 No 8 >d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]} Probab=1.21 E-value=3.8e+02 Score=9.72 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 211233103454310899999976553 Q gi|254781143|r 6 AKIQAEINIKKQQADAEYLLKKKLQSQ 32 (35) Q Consensus 6 akiqaeinikkqqadaeyllkkklqsq 32 (35) +.+|.|+...++.....--.|+.|.+| T Consensus 54 valqlEa~yrerl~~v~~evK~rLDy~ 80 (105) T d2clya1 54 IAMALEVTYRERLHRVYREVKNRLDYH 80 (105) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998899999998999999999988999 No 9 >d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=1.20 E-value=3.9e+02 Score=9.69 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 345431089999997655 Q gi|254781143|r 14 IKKQQADAEYLLKKKLQS 31 (35) Q Consensus 14 ikkqqadaeyllkkklqs 31 (35) +.+...+.|-++|.-|++ T Consensus 29 i~~~~~s~E~lIk~ALk~ 46 (48) T d1cuka1 29 IARPDASSETLIREALRA 46 (48) T ss_dssp SCCSSCCHHHHHHHHHHT T ss_pred HCCCCCCHHHHHHHHHHH T ss_conf 637999999999999998 No 10 >d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]} Probab=1.09 E-value=4.4e+02 Score=9.46 Aligned_cols=6 Identities=67% Similarity=0.983 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 112331 Q gi|254781143|r 7 KIQAEI 12 (35) Q Consensus 7 kiqaei 12 (35) |||||. T Consensus 50 kIqaEL 55 (64) T d1skva_ 50 KIEAEL 55 (64) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 Done!