RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
         (76 letters)



>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma,
          transcription; NMR {Escherichia coli} (B:)
          Length = 81

 Score = 28.5 bits (64), Expect = 0.33
 Identities = 5/61 (8%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 14 REKDIMMVSHLLAL-----QKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQNVNEYFN 68
          RE  ++ +   + +      +E+   F +    +        + +L      + +  + +
Sbjct: 22 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQ-IEAKALRKLRHPSRSEVLRSFLD 80

Query: 69 N 69
          +
Sbjct: 81 D 81


>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction,
           TIM- barrel, rossman-fold; HET: TAR CNC; 1.60A
           {Clostridium cochlearium} (B:1-409)
          Length = 409

 Score = 26.2 bits (58), Expect = 1.6
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 24/92 (26%)

Query: 6   NIGLG---SGNREKDIMMVSHLLALQKEILATFGLNNPFVSTT-HLYNG----------- 50
           NI +G    GN  +DI  +  L     E L  +G N+ FV+T  H + G           
Sbjct: 247 NITVGYGECGNMIQDIAALRCLEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPQDESKAFG 306

Query: 51  -------IARLAEA--VGVQNVNEYFNNPDSE 73
                  IA LA A  V V+  +E    P  E
Sbjct: 307 VIVTATTIAALAGATKVIVKTPHEAIGIPTKE 338


>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis
          receptor methylation; HET: SAH; 2.00A {Salmonella
          typhimurium} (A:1-86)
          Length = 86

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 23 HLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQNVNEYF----NNPDSEQWN 76
          H   + + I    G+         +YN + R   A+G+ +   Y      N +S +W 
Sbjct: 16 HFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQ 73


>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics,
           protein structure initiative, nysgxrc target T842, PFAM
           family UPF0054, PSI; 2.70A {Escherichia coli} (A:)
          Length = 155

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 5/27 (18%)

Query: 15  EKDIMMVSHLLALQKEILATFGLNNPF 41
           E + M      AL+ EI+   G  +P+
Sbjct: 129 EAEEM-----EALETEIMLALGYEDPY 150


>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics,
           MMP, hydrolase, protein structure initiative, S2F,
           structure 2 function project; NMR {Haemophilus
           influenzae} (A:)
          Length = 154

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 5/27 (18%)

Query: 15  EKDIMMVSHLLALQKEILATFGLNNPF 41
           E + M      +L+ +I+   G ++P+
Sbjct: 129 EAEEM-----ESLETQIMQGLGFDDPY 150


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 540,049
Number of extensions: 18310
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 5
Length of query: 76
Length of database: 4,956,049
Length adjustment: 41
Effective length of query: 35
Effective length of database: 3,570,044
Effective search space: 124951540
Effective search space used: 124951540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)