RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
         (76 letters)



>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli
           [TaxId: 562]}
          Length = 152

 Score = 25.4 bits (55), Expect = 1.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 26  ALQKEILATFGLNNPFVS 43
           AL+ EI+   G  +P+++
Sbjct: 135 ALETEIMLALGYEDPYIA 152


>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase
          CheR, N-terminal domain {Salmonella typhimurium [TaxId:
          90371]}
          Length = 81

 Score = 24.7 bits (54), Expect = 2.2
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 23 HLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGVQNVNEYF----NNPDSEQWN 76
          H   + + I    G+         +YN + R   A+G+ +   Y      N +S +W 
Sbjct: 16 HFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQ 73


>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532
           {Ralstonia eutropha [TaxId: 106590]}
          Length = 190

 Score = 24.4 bits (52), Expect = 2.4
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 42  VSTTHLYNGIARLAEAVGVQNVNEYFN 68
            + T  +    R+A  +G++  +E+F 
Sbjct: 158 AAITAFFGLSNRMANTIGMRPNDEFFL 184


>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score = 23.8 bits (50), Expect = 3.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)

Query: 28  QKEILATFGLNNPFVSTT 45
           +++I+   GLN+P +  +
Sbjct: 189 RQDIVRLLGLNDPLIQIS 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,381
Number of extensions: 9968
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)