BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781144|ref|YP_003065557.1| hypothetical protein
CLIBASIA_05240 [Candidatus Liberibacter asiaticus str. psy62]
         (76 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781144|ref|YP_003065557.1| hypothetical protein CLIBASIA_05240 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 76

 Score =  158 bits (399), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
          MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV
Sbjct: 1  MDAKVNIGLGSGNREKDIMMVSHLLALQKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60

Query: 61 QNVNEYFNNPDSEQWN 76
          QNVNEYFNNPDSEQWN
Sbjct: 61 QNVNEYFNNPDSEQWN 76


>gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 120

 Score = 22.3 bits (46), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 52 ARLAEAVGVQNVNEYFNNPDSE 73
          ARL + +G+ ++  YF N DS+
Sbjct: 69 ARLLKGLGMDDLVRYFMNLDSQ 90


>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score = 21.9 bits (45), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 39  NPFVSTTHLYNGIARLAEAVGVQNVNEYFNN 69
           N F + T L   + ++ +A+ +Q VN+   N
Sbjct: 215 NTFNTITDLITSLDKMIKAIDLQKVNQILEN 245


>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 106

 Score = 21.9 bits (45), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 48 YNGIARLAEAVGVQNVNEYFNNPDSEQ 74
          Y GI  LA+    Q++ EY N P   Q
Sbjct: 48 YKGIDVLADDALRQSIKEYSNWPTIPQ 74


>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 21.2 bits (43), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 55  AEAVGVQNVNEYFNN 69
           AE +GV++  +Y+NN
Sbjct: 218 AETIGVEDRVDYYNN 232


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 20.8 bits (42), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 30  EILATFGLNNPFVSTTHLYNG 50
           EI       NP  +  H+YNG
Sbjct: 208 EINKLLEAKNPLNAIVHMYNG 228


>gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 231

 Score = 20.8 bits (42), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 7   IGLGSGNREKDIMMVSHLLALQKEILATFGLN 38
           +G G    E D   V+  L+  KE+ + FGLN
Sbjct: 128 LGRGMLPIEIDQFGVNKTLSALKEVASCFGLN 159


>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 333

 Score = 20.0 bits (40), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 35  FGLNNPFVSTTHLYNGIARLAEA 57
           FG+   +++T H Y G   + +A
Sbjct: 167 FGIEKGYMTTVHSYTGDQHVLDA 189


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score = 20.0 bits (40), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 28  QKEILATFGLNNPFVSTTHLYNGIARLAEAVGV 60
           +KE  + + +N   ++TTH    + RL+ AV V
Sbjct: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,690
Number of Sequences: 1233
Number of extensions: 1572
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 76
length of database: 328,796
effective HSP length: 46
effective length of query: 30
effective length of database: 272,078
effective search space:  8162340
effective search space used:  8162340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)