HHsearch alignment for GI: 254781145 and conserved domain: pfam05133
>pfam05133 Phage_prot_Gp6 Phage portal protein, SPP1 Gp6-like. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, Gp6 participates in the procapsid assembly reaction. This family also includes family Phage_min_cap, pfam05126.
Probab=98.78 E-value=3.2e-06 Score=60.37 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=116.5
Q ss_pred CCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC-CCCCCCCCCEEE
Q ss_conf 4655568568985630687320354354310289999899884887876303662253134312100-001122574145
Q gi|254781145|r 157 NEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPE-SVLNPQFGKPIR 235 (350)
Q Consensus 157 ~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~~~-d~~~~~~g~~v~ 235 (350)
T Consensus 192 ~~~~g~vPvv~f~Nn~-~~-~~G~sd~e~v~~liDa~d~~~s~~~n~~~~~~~~~-lv~~g~~~~~~~~~~~~~~~~~~~ 268 (435)
T pfam05133 192 PHEFGRVPVVEFNNND-LR-SPGLSDLEPVKSLIDAYDKTLSEFANDFYDFPRAI-LVLKGYGEDDDEFVKDLKDAKLIR 268 (435)
T ss_pred CCCCCCCCEEEECCCC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-EEECCCCCCCCHHHHHHHHCCCEE
T ss_conf 6888852659862585-44-56865177769999999999838778898742003-774177766515678777514301
Q ss_pred ECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04666-55444444568876567999999999998875246664303544335513899999999999889999999999
Q gi|254781145|r 236 VAAGM-DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ 314 (350)
Q Consensus 236 ~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae 314 (350)
T Consensus 269 ~~~~~~~~~d~~~l~~~~~~~~~e~~~~~l~~~i~~~s~~~~~~~~~f~---~n~Sg~Alk~~~~~l~~ka~~~e~~f~~ 345 (435)
T pfam05133 269 LLDGAEDDGDAKFLTKQFPVASLENYLDALKQDIYEFAMVPDLPDEYFG---GNASGEALKAKYSLLDLKAERKERKFGE 345 (435)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1366678997048805688689999999999999998388999946608---8740999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999987
Q gi|254781145|r 315 GLEILFRGLLRLIIQ 329 (350)
Q Consensus 315 ~~k~l~~~i~~l~~~ 329 (350)
T Consensus 346 ~l~~~~~li~~~~~~ 360 (435)
T pfam05133 346 ALRRLLRLALEILGD 360 (435)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998667