Query gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 350
No_of_seqs 150 out of 629
Neff 8.4
Searched_HMMs 23785
Date Wed Jun 1 01:49:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781145.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jes_A Portal protein; DNA tra 98.6 4E-06 1.7E-10 58.3 16.3 164 157-331 236-400 (503)
2 1ify_A HHR23A, UV excision rep 29.7 13 0.00055 14.9 0.8 26 78-103 12-37 (49)
3 1vg5_A RSGI RUH-014, rhomboid 27.6 17 0.00073 14.1 1.1 17 78-94 33-49 (73)
4 2g3q_A Protein YBL047C; endocy 24.0 21 0.0009 13.5 1.1 19 78-96 8-26 (43)
5 1wgn_A UBAP1, ubiquitin associ 21.1 25 0.001 13.1 0.9 15 79-93 24-38 (63)
6 2cpw_A CBL-interacting protein 19.2 32 0.0014 12.3 1.3 17 78-94 23-39 (64)
7 1wji_A Tudor domain containing 18.5 18 0.00074 14.0 -0.3 26 77-102 12-37 (63)
8 1wiv_A UBP14, ubiquitin-specif 17.2 25 0.0011 13.0 0.2 14 79-92 34-47 (73)
9 2dak_A Ubiquitin carboxyl-term 15.2 40 0.0017 11.7 1.3 16 78-93 13-28 (63)
10 2dai_A Ubadc1, ubiquitin assoc 13.8 33 0.0014 12.2 0.1 42 78-119 33-74 (83)
No 1
>2jes_A Portal protein; DNA translocation, molecular motor, viral portal protein, viral protein; 3.4A {Bacteriophage SPP1}
Probab=98.64 E-value=4e-06 Score=58.31 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=118.4
Q ss_pred CCCCCCCCEEEEEEEECCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCCCCCCCCCEEE
Q ss_conf 46555685689856306873203543543102899998998848878763036622531343121-00001122574145
Q gi|254781145|r 157 NEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIID-PESVLNPQFGKPIR 235 (350)
Q Consensus 157 ~~~~~~~Pf~~~~~~p~p~~~~G~g~~d~l~~lQ~~~n~~~R~~lDn~~l~~~p~~~v~~~~~~~-~~d~~~~~~g~~v~ 235 (350)
..++..+||+.|.. .-+|.|..+.+.+++++.+.++..+.+.+....+|.+.+......+ .+...+.+.++.+.
T Consensus 236 ~~~~~~vPii~~~n-----n~~g~sd~e~v~~LiDa~d~~~S~~~n~~~~~~~~ilv~~g~~~~~~~~~~~~~~~~~~~~ 310 (503)
T 2jes_A 236 AIGWGRVPIIPFKN-----NEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKEFTANLRYHSVIK 310 (503)
T ss_dssp ---CCSCSCEEEES-----SSSCCCGGGGTHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEESCSCHHHHHHHHHHSSEEE
T ss_pred CCCCCCCCEEEEEC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 13468756699746-----8778660652299999999987078899998761464304777766065777766324413
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04666554444445688765679999999999988752466643035443355138999999999998899999999999
Q gi|254781145|r 236 VAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQG 315 (350)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~e~~tGi~~~~~G~~~~~~~~~TAt~is~~~~~a~~r~~~~~R~~ae~ 315 (350)
+..++.++ .+............++.+...+-..+++++.+.+.. .++.++.++..+.....++.....|.|..+
T Consensus 311 ~~~~~~~~---~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~---~gn~Sg~Aik~~~~~l~~ka~~~e~~~~~~ 384 (503)
T 2jes_A 311 VSGDGGVD---TLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETI---GGGATGPALEKLYALLDLKANMAERKIRAG 384 (503)
T ss_dssp EEEEEEEE---EECCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCCSS---TTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCE---EEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999805---886158848999999999999999839997785334---677439999998747999999999999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999998748
Q gi|254781145|r 316 LEILFRGLLRLIIQHQ 331 (350)
Q Consensus 316 ~k~l~~~i~~l~~~~~ 331 (350)
++.+++.+.+++....
T Consensus 385 l~~~~~li~~~l~~~~ 400 (503)
T 2jes_A 385 LRLFFWFFAEYLRNTG 400 (503)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999997416
No 2
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.68 E-value=13 Score=14.92 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=16.9
Q ss_pred HHHHHHHCCCCHHHCCCCCCCCCCHH
Q ss_conf 89998727980443027778764101
Q gi|254781145|r 78 RSDLISMGYDRESINNLPIISSQNIE 103 (350)
Q Consensus 78 ~~eL~~~Gy~~d~v~~~~~~~~~~~~ 103 (350)
..+|.+|||+++.....-.....+.+
T Consensus 12 v~~L~~MGF~~~~a~~AL~~~~~n~e 37 (49)
T 1ify_A 12 LTEIMSMGYERERVVAALRASYNNPH 37 (49)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTTSCSH
T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHH
T ss_conf 99999849999999999999399999
No 3
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.59 E-value=17 Score=14.11 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=9.4
Q ss_pred HHHHHHHCCCCHHHCCC
Q ss_conf 89998727980443027
Q gi|254781145|r 78 RSDLISMGYDRESINNL 94 (350)
Q Consensus 78 ~~eL~~~Gy~~d~v~~~ 94 (350)
..+|++|||+++.....
T Consensus 33 i~~L~~MGF~~~~a~~A 49 (73)
T 1vg5_A 33 IQKLVAMGFDRTQVEVA 49 (73)
T ss_dssp HHHHHTTTCCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHH
T ss_conf 99999918999999999
No 4
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.02 E-value=21 Score=13.48 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=13.4
Q ss_pred HHHHHHHCCCCHHHCCCCC
Q ss_conf 8999872798044302777
Q gi|254781145|r 78 RSDLISMGYDRESINNLPI 96 (350)
Q Consensus 78 ~~eL~~~Gy~~d~v~~~~~ 96 (350)
..+|.+|||+++.+...-.
T Consensus 8 v~~L~~MGF~~~~a~~AL~ 26 (43)
T 2g3q_A 8 VEELSGMGFTEEEAHNALE 26 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHH
T ss_conf 9999985999999999999
No 5
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.07 E-value=25 Score=13.08 Aligned_cols=15 Identities=27% Similarity=0.611 Sum_probs=6.7
Q ss_pred HHHHHHCCCCHHHCC
Q ss_conf 999872798044302
Q gi|254781145|r 79 SDLISMGYDRESINN 93 (350)
Q Consensus 79 ~eL~~~Gy~~d~v~~ 93 (350)
.+|.+|||+++.+.+
T Consensus 24 ~~L~~MGF~~~~a~~ 38 (63)
T 1wgn_A 24 ETVVNMGYSYECVLR 38 (63)
T ss_dssp HHHHHHHCCHHHHHH
T ss_pred HHHHHCCCCHHHHHH
T ss_conf 999996998999999
No 6
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=19.24 E-value=32 Score=12.31 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=10.1
Q ss_pred HHHHHHHCCCCHHHCCC
Q ss_conf 89998727980443027
Q gi|254781145|r 78 RSDLISMGYDRESINNL 94 (350)
Q Consensus 78 ~~eL~~~Gy~~d~v~~~ 94 (350)
..+|.+|||.++..++.
T Consensus 23 l~~L~~MGF~~~~a~~A 39 (64)
T 2cpw_A 23 LDVLLSMGFPRARAQKA 39 (64)
T ss_dssp HHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHH
T ss_conf 99999969989999999
No 7
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=18.45 E-value=18 Score=14.04 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=15.6
Q ss_pred CHHHHHHHCCCCHHHCCCCCCCCCCH
Q ss_conf 68999872798044302777876410
Q gi|254781145|r 77 TRSDLISMGYDRESINNLPIISSQNI 102 (350)
Q Consensus 77 t~~eL~~~Gy~~d~v~~~~~~~~~~~ 102 (350)
...+|.+|||.++...+.-.....+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~~~~~~ 37 (63)
T 1wji_A 12 ALKHITEMGFSKEASRQALMDNGNNL 37 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTSCH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCH
T ss_conf 99999996999999999999929899
No 8
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=17.18 E-value=25 Score=13.04 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=6.1
Q ss_pred HHHHHHCCCCHHHC
Q ss_conf 99987279804430
Q gi|254781145|r 79 SDLISMGYDRESIN 92 (350)
Q Consensus 79 ~eL~~~Gy~~d~v~ 92 (350)
.+|.+|||.++.+.
T Consensus 34 ~~L~~MGF~~~~a~ 47 (73)
T 1wiv_A 34 DTLLSFGFAEDVAR 47 (73)
T ss_dssp HHHHHHTCCHHHHH
T ss_pred HHHHHCCCCHHHHH
T ss_conf 99999699999999
No 9
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.17 E-value=40 Score=11.68 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCHHHCC
Q ss_conf 8999872798044302
Q gi|254781145|r 78 RSDLISMGYDRESINN 93 (350)
Q Consensus 78 ~~eL~~~Gy~~d~v~~ 93 (350)
..+|.+|||.+....+
T Consensus 13 v~~L~~MGF~~~~a~~ 28 (63)
T 2dak_A 13 VTTIVSMGFSRDQALK 28 (63)
T ss_dssp HHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCHHHHHH
T ss_conf 9999996999999999
No 10
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.84 E-value=33 Score=12.20 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 899987279804430277787641013320245654556751
Q gi|254781145|r 78 RSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALE 119 (350)
Q Consensus 78 ~~eL~~~Gy~~d~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 119 (350)
..+|.+|||.+......-.....+.+.-..+.-....|...+
T Consensus 33 v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~h~~d~~~d 74 (83)
T 2dai_A 33 LRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTID 74 (83)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTC
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 999999699999999999993999999999999878988866
Done!