BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781145|ref|YP_003065558.1| hypothetical protein
CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
(350 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040822|gb|ACT57618.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD 60
MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD
Sbjct: 1 MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD 60
Query: 61 SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120
SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM
Sbjct: 61 SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120
Query: 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE 180
IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE
Sbjct: 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE 180
Query: 181 SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM 240
SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM
Sbjct: 181 SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM 240
Query: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS
Sbjct: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY
Sbjct: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
>gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 637
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 294/343 (85%), Positives = 317/343 (92%), Gaps = 1/343 (0%)
Query: 9 MLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSP 68
+LI D +VEVLEH+ R+D E +HD+RIRRKYSQGKVCVDAV PDEFLIHPD+ DIEKSP
Sbjct: 156 LLISDPEVEVLEHTQRKDREEIIHDIRIRRKYSQGKVCVDAVPPDEFLIHPDATDIEKSP 215
Query: 69 IVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYV 128
IVGRKLYLTRSDLISMGYDR+ IN L + SSQ EN+W+ K +SD ALEMIEYYELYV
Sbjct: 216 IVGRKLYLTRSDLISMGYDRKYINQLQVASSQGNENSWQLSKYHHSDTALEMIEYYELYV 275
Query: 129 TIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIE 188
T+DYD DGIAELRRV+M GGTGKDNIL NEEW+ELPFTCLRA+RAPHCF+GESLA+SIIE
Sbjct: 276 TLDYDNDGIAELRRVVMVGGTGKDNILVNEEWDELPFTCLRAIRAPHCFVGESLASSIIE 335
Query: 189 IQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGI 248
IQKIKTVLLRQTLDNLYWQNQPQTIVQEGSI+DPESVLNPQFGKPIRV +GMDIRSVLGI
Sbjct: 336 IQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIVDPESVLNPQFGKPIRVVSGMDIRSVLGI 395
Query: 249 HSVPMI-EKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVEL 307
HSVPMI +KSFSMLHYLDQELVDRTGISDISSG SPEILQNMTATATSLIEQSGVGQVEL
Sbjct: 396 HSVPMIADKSFSMLHYLDQELVDRTGISDISSGLSPEILQNMTATATSLIEQSGVGQVEL 455
Query: 308 IVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
IVRTLAQGLE LFRGLLRLIIQHQDKVRMVRLRDQW+SFDPR+
Sbjct: 456 IVRTLAQGLERLFRGLLRLIIQHQDKVRMVRLRDQWISFDPRH 498
>gi|150397041|ref|YP_001327508.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
gi|150028556|gb|ABR60673.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
Length = 683
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 251/356 (70%), Gaps = 15/356 (4%)
Query: 10 LIKDSDVEVLEHSH---REDGGEKV-----HDLRIRRKYSQGKVCVDAVSPDEFLIHPDS 61
L+ D +VEVLE S R + + V + ++IRR+ +G + AV +EFLIHPD+
Sbjct: 156 LVGDDEVEVLEQSQTVERMETPQGVVEQPSYSVKIRRRAERGTPRLAAVPLEEFLIHPDA 215
Query: 62 VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWK------FPKNQYSD 115
+ I SPI G + + RSDL++MG+DR+ I+ LP + ++ F
Sbjct: 216 ISIADSPITGFAMRMRRSDLVAMGHDRDLIDGLPAAEAGGRDDEASTRRRDAFETKDAVP 275
Query: 116 KALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPH 175
KALE ++YYELYV +D D DGIAELRR++ AGGT ++N+L NEEW+E+PF L R PH
Sbjct: 276 KALEEVDYYELYVKVDADDDGIAELRRLVFAGGTSEENLLSNEEWDEVPFADLTVERRPH 335
Query: 176 CFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIR 235
G S+ + EIQ++KTVL+RQTLDNLYWQN Q IVQEG+I +PE+VLNP+FG+PIR
Sbjct: 336 QREGGSVTGDMAEIQRVKTVLMRQTLDNLYWQNNQQPIVQEGAIANPEAVLNPKFGQPIR 395
Query: 236 VAAGMDIRSVLGIHSVPMIEK-SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATAT 294
V+ G+D R+ LG VP + K SF+ML YLDQE DRTGISD SSG +P+ LQNMTA AT
Sbjct: 396 VSQGIDARAALGYTMVPFVAKESFAMLSYLDQEATDRTGISDASSGMAPDALQNMTARAT 455
Query: 295 SLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
+L+EQ+G+GQ EL+VRT AQGL +FRGLLRL+++HQD+ R VRLR QWV+FDPR+
Sbjct: 456 ALVEQAGIGQTELMVRTFAQGLRRVFRGLLRLVVKHQDRPRAVRLRGQWVTFDPRH 511
>gi|227822448|ref|YP_002826420.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
gi|227341449|gb|ACP25667.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
Length = 684
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/357 (52%), Positives = 249/357 (69%), Gaps = 16/357 (4%)
Query: 10 LIKDSDVEVLEHSHREDGGEK--------VHDLRIRRKYSQGKVCVDAVSPDEFLIHPDS 61
LI D +VEV+E S + E + ++IRR+ +G + AV +EFLIHP++
Sbjct: 156 LIGDDEVEVVEQSRTTEKIETPQGMVEQPSYSVKIRRRLERGTPRLAAVPLEEFLIHPEA 215
Query: 62 VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQ-------YS 114
+ I SPI G + RSDLI+ GYDR+ I LP + + + +F + +
Sbjct: 216 ISIADSPIAGIATRMRRSDLIATGYDRDLIEGLPASTGDSGRDDEEFTRRRGVFEAKDAV 275
Query: 115 DKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAP 174
KALE ++YYELYV +D D DGIAELRR+++AGGTG++++L NEEW+E+PF L R P
Sbjct: 276 PKALEEVDYYELYVKVDADDDGIAELRRLVLAGGTGEEHLLSNEEWDEVPFADLIIERRP 335
Query: 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
H G S+ + EIQ++KTVL+RQTLDNLYWQN Q IVQEG+I +PESVLNP+F +PI
Sbjct: 336 HQREGGSVTDDMAEIQRVKTVLMRQTLDNLYWQNNQQPIVQEGAIANPESVLNPKFAQPI 395
Query: 235 RVAAGMDIRSVLGIHSVPMIEK-SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATA 293
RV+ G+D R+ LG VP + K SF+ML YLDQE DRTGISD SSG +P+ L NMTA A
Sbjct: 396 RVSQGIDARAALGYTMVPFVAKESFAMLSYLDQEATDRTGISDASSGLAPDALTNMTARA 455
Query: 294 TSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
T+LIEQ+G+GQ EL+VRT AQGL +F+GLLRL+I+HQD+ R VRLR QWV+FDPR+
Sbjct: 456 TALIEQAGIGQTELMVRTFAQGLRRVFKGLLRLVIKHQDRPRAVRLRGQWVTFDPRH 512
>gi|227822445|ref|YP_002826417.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
gi|227341446|gb|ACP25664.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
Length = 361
Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/189 (62%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
Query: 163 LPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDP 222
+PF L R PH G S+ + EIQ++KTVL+RQTLDNLYWQN Q IVQEG+I +P
Sbjct: 1 MPFADLIIERRPHQREGGSVTDDMAEIQRVKTVLMRQTLDNLYWQNNQQPIVQEGAIANP 60
Query: 223 ESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEK-SFSMLHYLDQELVDRTGISDISSGF 281
ESVLNP+FG+PIRV+ G+D R+ LG VP + K SF+ML YLDQE DRTGISD SSG
Sbjct: 61 ESVLNPKFGQPIRVSQGIDARAALGYTMVPFVAKESFAMLSYLDQEATDRTGISDASSGL 120
Query: 282 SPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRD 341
+P+ L NMTA AT+LIEQ+G+GQ EL+VRT AQGL +F+GLLRL+I+HQD+ R VRLR
Sbjct: 121 APDALTNMTARATALIEQAGIGQTELMVRTFAQGLRRVFKGLLRLVIKHQDRPRAVRLRG 180
Query: 342 QWVSFDPRY 350
QWV+FDPR+
Sbjct: 181 QWVTFDPRH 189
>gi|291334599|gb|ADD94249.1| hypothetical protein Daci_1943 [uncultured phage
MedDCM-OCT-S04-C136]
Length = 741
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 187/327 (57%), Gaps = 12/327 (3%)
Query: 31 VHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRES 90
+++ +I+R G+V ++++ P+EFLI + IE + V K+ +TRSDL++MGY ++
Sbjct: 206 LYNCKIKRIKKTGRVKIESIPPEEFLIDRSAKTIEDADFVSHKVLMTRSDLVAMGYPQDE 265
Query: 91 INNLPI--ISSQNIENTWKFPK------NQYSDKALEMIEYYELYVTIDYDGDGIAELRR 142
++ LP + N E T + + +D + E + YE YV DYD DGIAELR+
Sbjct: 266 VDELPKSDLDIYNDEETVRLADVDDYRISSSTDTSTEKVLVYESYVKYDYDEDGIAELRK 325
Query: 143 VIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLD 202
++ AG G +IL N + +PF + + PH F G S++ + ++Q +K+ ++RQ LD
Sbjct: 326 IVSAGADGH-HILSNMPCDSVPFVTITPIPMPHRFYGRSISELVEDVQLMKSTVMRQLLD 384
Query: 203 NLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLH 262
N+Y N + V +G +++ + +L + G +R + + + + + P+ +++F +L
Sbjct: 385 NMYLTNNNRVAVMDG-MVNMDDLLTTRPGGIVRTKQPPN-QVMQPLQAQPISQQAFPLLS 442
Query: 263 YLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFR 321
YLD RTG+S + G SP+ L TAT + + Q + ELI R A+ G++ LF+
Sbjct: 443 YLDSVREGRTGVSKEAQGLSPDTLNAKTATGVNALMQQTQMRSELIARVFAETGVKDLFK 502
Query: 322 GLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ L++++QDK +++ + +Q++ P
Sbjct: 503 KIFELMVKYQDKEKIIMMSNQYIPVRP 529
>gi|160897386|ref|YP_001562968.1| hypothetical protein Daci_1943 [Delftia acidovorans SPH-1]
gi|160362970|gb|ABX34583.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
Length = 763
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 165/330 (50%), Gaps = 22/330 (6%)
Query: 33 DLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDR-ESI 91
D+ +R G+V V+ V P+EFLI + IE + VG ++ T S+L SMGY + I
Sbjct: 233 DVVCKRVKKGGRVRVENVPPEEFLISRKAKSIEDASFVGHRVARTISELKSMGYKNVDDI 292
Query: 92 NNLPIISSQNIEN----TW-------KFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL 140
+ +S N+E +W + Q D + I E Y+ DYDGDGIAEL
Sbjct: 293 TSDDQAASLNMERIERLSWDDEMAYLQMDNVQSMDTSQRQIWVTECYLRCDYDGDGIAEL 352
Query: 141 RRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200
R+V+ AG + IL NE + PF + + PH F G S+A +E Q+I T+LLR
Sbjct: 353 RKVVRAG----NQILENEVCDVAPFVSITPVPMPHKFFGLSVADLALEGQRINTILLRNQ 408
Query: 201 LDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV-AAGMDIRSVLGIHSVPMIEKSFS 259
LDN + + EG + + + +L + G +R+ +AGM R G + + +
Sbjct: 409 LDNNNLEVNGRYFAVEGQV-NLDDLLTSRPGGVVRMKSAGMAGRLDQGAGNSGL---NLQ 464
Query: 260 MLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEIL 319
M+ Y+ D TG + + G + L N TAT + I +++LI R A G L
Sbjct: 465 MMEYMKGFQEDSTGWTRYNQGSDGDSL-NQTATGVNQIVNRADMRLDLIARNYADGFREL 523
Query: 320 FRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
FR +L+L Q+Q MV+LR +WV PR
Sbjct: 524 FRLMLKLCSQYQQTEDMVKLRGKWVPVSPR 553
>gi|291334641|gb|ADD94289.1| portal protein [uncultured phage MedDCM-OCT-S04-C64]
Length = 755
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 167/321 (52%), Gaps = 16/321 (4%)
Query: 43 GKVCVDAVSPDEFLI--HPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQ 100
G + ++ V P+EF I + S +E + + + S+L++MGYD E I +LP S
Sbjct: 190 GSIRIEPVPPEEFGIARNARSPYVEDTNFCYHRTLKSFSELVAMGYDVELIRSLPFDESA 249
Query: 101 NIENTW--------KFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGG---T 149
E + P + S++++ E Y+ ID DGD IAEL RV +AGG +
Sbjct: 250 MTEEELARRNKTDEEEPFDYVSEESMRNYFITECYIKIDRDGDDIAELLRVTLAGGNYTS 309
Query: 150 GKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQ 209
G +L EE + +PF + PH F G S+A +++Q+IK+VL RQ LDN Y N
Sbjct: 310 GSSRLLGIEEVDHMPFATCSPILMPHKFYGLSIADITMDLQRIKSVLTRQMLDNTYLANN 369
Query: 210 PQTIVQEGSIIDPESVLNPQFGKPIRVAA-GMDIRSVLGIHSVPMIEKSFSMLHYLDQEL 268
+T V + S ++ + +L + G +R G + + I P+ ++++M+ YLD
Sbjct: 370 SRTAVND-SHVNLDDLLTSRPGGVVRYKGEGSASQYITPIPHNPLPNEAYTMMGYLDDVR 428
Query: 269 VDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLI 327
RTG+ D ++G L N+ +L + ++ELI R L + G + +FR + +L+
Sbjct: 429 RQRTGVGDETAGLGENSLSNVNTGVAALAFDAKRMKIELIARILGEVGFKDVFRLIHKLL 488
Query: 328 IQHQDKVRMVRLRDQWVSFDP 348
++HQD+ ++ + + + +P
Sbjct: 489 MKHQDRKMLLNVAGNFQAINP 509
>gi|167600438|ref|YP_001671938.1| portal protein [Pseudomonas phage LUZ24]
gi|161168301|emb|CAP45466.1| portal protein [Pseudomonas phage LUZ24]
Length = 706
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 26/354 (7%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
++ D D E+L S EDG + ++IR+ + ++ V + P+ FL+ + I+ +
Sbjct: 163 ILADPDTEILAQSVDEDG---TYSIKIRKDKKKREIKVTCIKPENFLVDRLATCIDDARF 219
Query: 70 VGRKLYLTRSDLISMGYDRESINNLPI------------ISSQNIENTWKFPKNQYSD-K 116
+ + T SDL +G + ++ LP + N + T + N D +
Sbjct: 220 LCHREKYTVSDLRLLGVPEDVLDELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAE 279
Query: 117 ALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHC 176
A + E Y +D DGDGI+ELRR++ G D I+ NE W+ PF L A R H
Sbjct: 280 ANREVWASECYTLLDVDGDGISELRRILYVG----DYIISNEPWDSRPFADLNAYRIAHK 335
Query: 177 FIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236
F G S+ I +IQ+I++VL+R +DN+Y NQ +++V +G ++ E +L + +RV
Sbjct: 336 FHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQ-VNLEDLLTNEAAGIVRV 394
Query: 237 AAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQ-NMTATATS 295
A + S++ + + + + + ML L+ + RTGI+D + G L N A + +
Sbjct: 395 KA---MNSIMPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVN 451
Query: 296 LIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ + Q++LI R A+ G++ LF+ L I++Q++ + +LR +WV+ +P
Sbjct: 452 QLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAINP 505
>gi|291334834|gb|ADD94474.1| hypothetical protein CLIBASIA_05245 [uncultured phage
MedDCM-OCT-S06-C1041]
Length = 265
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 14/263 (5%)
Query: 84 MGYDRESINNLPIISSQNIENTW--------KFPKNQYSDKALEMIEYYELYVTIDYDGD 135
MGYD E I +LP S E + P + S++++ E Y+ ID DGD
Sbjct: 1 MGYDVELIRSLPFDESAMTEEELARRNKTDEEEPFDYVSEESMRNYFITECYIKIDRDGD 60
Query: 136 GIAELRRVIMAGG---TGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKI 192
IAEL RV +AGG +G +L EE + +PF + PH F G S+A +++Q+I
Sbjct: 61 DIAELLRVTLAGGNYTSGSSRLLGIEEVDHMPFATCSPILMPHKFYGLSIADITMDLQRI 120
Query: 193 KTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAA-GMDIRSVLGIHSV 251
K+VL RQ LDN Y N +T V + S ++ + +L + G +R G + + I
Sbjct: 121 KSVLTRQMLDNTYLANNSRTAVND-SHVNLDDLLTSRPGGVVRYKGEGSASQYITPIPHN 179
Query: 252 PMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRT 311
P+ ++++M+ YLD RTG+ D ++G L N+ +L + ++ELI R
Sbjct: 180 PLPNEAYTMMGYLDDVRRQRTGVGDETAGLGENSLSNVNTGVAALAFDAKRMKIELIARI 239
Query: 312 LAQ-GLEILFRGLLRLIIQHQDK 333
L + G + +FR + +L+++HQD+
Sbjct: 240 LGEVGFKDVFRLIHKLLMKHQDR 262
>gi|221199509|ref|ZP_03572553.1| putative portal protein [Burkholderia multivorans CGD2M]
gi|221205589|ref|ZP_03578604.1| putative portal protein [Burkholderia multivorans CGD2]
gi|221174427|gb|EEE06859.1| putative portal protein [Burkholderia multivorans CGD2]
gi|221180794|gb|EEE13197.1| putative portal protein [Burkholderia multivorans CGD2M]
Length = 807
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 166/339 (48%), Gaps = 32/339 (9%)
Query: 30 KVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDR- 88
++H++ + R G V ++AV P++FL+ S I + ++ T SDL + GY+
Sbjct: 272 RLHNVVLTRSKKAGHVAIEAVMPEDFLVSARSRRI-RDGFCAHRVRKTLSDLKAEGYENV 330
Query: 89 ESINNLP----------IISSQNIEN--TWKFPKNQYSDKALEMIEYYELYVTIDYDGDG 136
E I++ P ++ QN +N + + D++ +E YE Y+ ID DGDG
Sbjct: 331 ELIDSEPNAVAADLSELALARQNEQNRVVTNALDDGFGDESQREVELYECYLPIDVDGDG 390
Query: 137 IAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVL 196
I+E R++ AG IL NE + PF + + P IG S+A + IQ+IKT
Sbjct: 391 ISEWRKITKAGNA----ILDNEVVDGPPFALVSPISIPGLLIGRSIADLAMPIQRIKTKF 446
Query: 197 LRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGI----HSVP 252
LR DN+ Q + + +G + + + N R G+ I+S I +P
Sbjct: 447 LRGLDDNMQIQINGRVGLVDGKVNVNDWMDN-------RPGGGVRIKSADAIVPIKQGLP 499
Query: 253 MIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTL 312
I + +L Y+D +RTGI+ S G + L N TA I +V++I R
Sbjct: 500 DIAGAMQLLQYVDAMSQERTGITKYSQGLDADTL-NHTADGIKRITARADLRVKMIARKF 558
Query: 313 AQ-GLEILFRGLLRLIIQHQDKVRMVRL-RDQWVSFDPR 349
A+ G+ LFR + +L++QHQDK + L + +WV DPR
Sbjct: 559 AETGVTDLFRLIQKLLMQHQDKPMSIALSKGKWVDIDPR 597
>gi|27476052|ref|NP_775254.1| putative portal protein [Pseudomonas phage PaP3]
gi|27414482|gb|AAL85568.1| ORF.04 [Pseudomonas phage PaP3]
Length = 705
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 180/354 (50%), Gaps = 26/354 (7%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
++ D D +L S +DG + ++IR+ + ++ V V P+ FL+ + I+ +
Sbjct: 162 ILSDPDTSILAQSVDDDG---TYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARF 218
Query: 70 VGRKLYLTRSDLISMGYDRESINNLPI------------ISSQNIENTWKFPKNQYSD-K 116
+ + T SDL +G + I LP + N + T + N D +
Sbjct: 219 LCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAE 278
Query: 117 ALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHC 176
A + E Y +D DGDGI+ELRR++ G D I+ NE W+ PF L A R H
Sbjct: 279 ANREVWASECYTLLDVDGDGISELRRILYVG----DYIISNEPWDCRPFADLNAYRIAHK 334
Query: 177 FIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236
F G S+ I +IQ+I++VL+R +DN+Y NQ +++V +G ++ E +L + +RV
Sbjct: 335 FHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQ-VNLEDLLTNEAAGIVRV 393
Query: 237 AAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQ-NMTATATS 295
+ + S+ + + + + + ML L+ + RTGI+D + G L N A + +
Sbjct: 394 KS---MNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVN 450
Query: 296 LIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ + Q++LI R A+ G++ LF+ L I++Q++ + +LR +WV+ +P
Sbjct: 451 QLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNP 504
>gi|148257059|ref|YP_001241644.1| hypothetical protein BBta_5791 [Bradyrhizobium sp. BTAi1]
gi|146409232|gb|ABQ37738.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 557
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 163/340 (47%), Gaps = 30/340 (8%)
Query: 31 VHDLRI--RRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYL-TRSDLISMGYD 87
HD+ I RK++Q +V V P+EF I + I ++ T + LI+ G+D
Sbjct: 19 THDVTIVTTRKFAQARVM--GVPPEEFGIERGARSIRDCNYCFHEIVTKTEAQLIAEGFD 76
Query: 88 RESINNLP-IISSQNIENTWKFPKNQ-------YSDKALEMIEYYELYVTIDYDGDGIAE 139
I +L + +E + ++ ++ ++ E YV +DY+G+G
Sbjct: 77 AAQIRSLGDYAGTTRVETLARDTVDEQSRASASAANSGTRLVRITEHYVRMDYEGEGRPC 136
Query: 140 LRRVIMAGGTG----KDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTV 195
L ++I G G KD C ++ +PF + H F G S+A ++ +Q+ KT
Sbjct: 137 LYQIITGGDQGEILRKDGQDCITPFDAIPFAATTPVPMTHRFFGRSIADLVMPLQREKTA 196
Query: 196 LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKP-----IRVAAGMDIRSVLGIHS 250
L R LDNLY N P+ V E + P ++ + +P + A G++ + V
Sbjct: 197 LKRGALDNLYLHNNPRVEVAEANA-GPNTLDDLLVSRPGGVVRTKTAGGLNWQVV----- 250
Query: 251 VPMIEKS-FSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIV 309
P I S + ML Y+D EL R+G+S + G LQN +ATA + + + +++LI
Sbjct: 251 -PDITSSIYPMLQYIDAELESRSGLSKQAQGIDANALQNQSATAVAQVFSASQMRIKLIA 309
Query: 310 RTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
R +A+G+ +F L I +H + + VRLR+ WV DPR
Sbjct: 310 RIMAEGVRDMFGLLHATIRKHGQQRQTVRLRNAWVQVDPR 349
>gi|294083946|ref|YP_003550703.1| putative portal protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663518|gb|ADE38619.1| putative portal protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 697
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 29/359 (8%)
Query: 7 IHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEK 66
+ ML+ DV++++ S +D G + + R SQ V ++ + P+E ++ +E+
Sbjct: 180 LDMLLAQDDVDLIDSS-TDDVGMVSGTIGVTRDTSQ--VVIETIPPEELIVEAQCKSLEE 236
Query: 67 SPIVGRKLYLTRSDLISMGYDRESINNL-----------PIISSQN--IENTWKFPKNQY 113
S + T S+L M D + ++++ P I +++ + F + Y
Sbjct: 237 STFSAHRTRKTLSELREMYPDSDKLDDIGDHEDVEMETDPEILARHDGVSENRGFSSHGY 296
Query: 114 SDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCN-EEWNELPFTCLRAMR 172
D+ ++ YE Y+ +D +G GIA+L +V AG N+L + EE PF +
Sbjct: 297 QDQVRHIL-CYEAYIMLDVEGSGIAKLHKVTKAG-----NVLLDIEEVKRRPFVTFCPLP 350
Query: 173 APHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
PH F G + A + Q +TVL R LD+ N P+ +V +G + +P +++ + G
Sbjct: 351 IPHAFYGSNFAEKLCATQNARTVLTRSILDHAMITNNPRYMVVKGGLSNPRELIDNRVGG 410
Query: 233 PIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEIL--QNMT 290
+ V+ ++ + P+ F L LDQ+L D TG+S +S G + + + QN
Sbjct: 411 LVNVSRP---DAISAMPQAPLNPFVFQTLQQLDQDLEDNTGVSRLSQGLNKDAISKQNSA 467
Query: 291 ATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
A L S Q +++ R AQ ++ LF + RL+++++D+ ++V + +V DPR
Sbjct: 468 AMVEQLATMSQQRQ-KILARHFAQFVKSLFHEIYRLVVENEDQQKIVEISGAYVEVDPR 525
>gi|241760934|ref|ZP_04759023.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374553|gb|EER64014.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 729
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 75 YLTRSDLISMGYDRESINNLPIISSQNIENT-------WKFPK--NQYSDKALEMIEYYE 125
Y T SDLISMG+DR+ + +LP S ++ N+ W+ + SD+A + YE
Sbjct: 237 YKTLSDLISMGFDRDIVESLP--SDKSFPNSDGRSDARWRDESFLSGSSDQANREVLLYE 294
Query: 126 LYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAAS 185
YV ID DGDGIAEL ++ KD +L EE +E PF H IG SLA
Sbjct: 295 EYVRIDRDGDGIAELLQIFRV----KDVLLSIEEVDEAPFVVWTPFPRAHRMIGNSLAEK 350
Query: 186 IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSV 245
+++IQ++K+VL+RQ LD +Y N P+ V + + + F + + G +R
Sbjct: 351 VMDIQRVKSVLMRQALDGVYQTNAPRMAV------NVDGLTEDTFDDLLTIRPGAIVRYR 404
Query: 246 LGIHSVPM-----IEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
GI P+ I+KS M+ Y+ RTGI+ ++ G + L N TAT +L++
Sbjct: 405 GGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSL-NKTATGQALLQAQ 463
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
G E + R AQ L LF+ L L+I D + +++ + + DP
Sbjct: 464 GQQMEEYVARNFAQSLGRLFQKKLWLMIASGDPM-AIKVEGLYKTVDP 510
>gi|260753098|ref|YP_003225991.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258552461|gb|ACV75407.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 729
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 75 YLTRSDLISMGYDRESINNLPIISSQNIENT-------WKFPK--NQYSDKALEMIEYYE 125
Y T SDLISMG+DR+ + +LP S ++ N+ W+ + SD+A + YE
Sbjct: 237 YKTLSDLISMGFDRDIVESLP--SDKSFPNSDGRSDARWRDESFLSGSSDQANREVLLYE 294
Query: 126 LYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAAS 185
YV ID DGDGIAEL ++ KD +L EE +E PF H IG SLA
Sbjct: 295 EYVRIDRDGDGIAELLQIFRV----KDVLLSIEEVDEAPFVVWTPFPRAHRMIGNSLAEK 350
Query: 186 IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSV 245
+++IQ++K+VL+RQ LD +Y N P+ V + + + F + + G +R
Sbjct: 351 VMDIQRVKSVLMRQALDGVYQTNAPRMAV------NVDGLTEDTFDDLLTIRPGAIVRYR 404
Query: 246 LGIHSVPM-----IEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
GI P+ I+KS M+ Y+ RTGI+ ++ G + L N TAT +L++
Sbjct: 405 GGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSL-NKTATGQALLQAQ 463
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
G E + R AQ L LF+ L L+I D + +++ + + DP
Sbjct: 464 GQQMEEYVARNFAQSLGRLFQKKLWLMIASGDPM-AIKVEGLYKTVDP 510
>gi|56551276|ref|YP_162115.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542850|gb|AAV89004.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 729
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 75 YLTRSDLISMGYDRESINNLPIISSQNIENT-------WKFPK--NQYSDKALEMIEYYE 125
Y T SDLISMG+DR+ + +LP S ++ N+ W+ + SD+A + YE
Sbjct: 237 YKTLSDLISMGFDRDIVESLP--SDKSFPNSDGRSDARWRDESFLSGSSDQANREVLLYE 294
Query: 126 LYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAAS 185
YV ID DGDGIAEL ++ KD +L EE +E PF H IG SLA
Sbjct: 295 EYVRIDRDGDGIAELLQIFRV----KDVLLSIEEVDEAPFVVWTPFPRAHRMIGNSLAEK 350
Query: 186 IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSV 245
+++IQ++K+VL+RQ LD +Y N P+ V + + + F + + G +R
Sbjct: 351 VMDIQRVKSVLMRQALDGVYQTNAPRMAV------NVDGLTEDTFDDLLTIRPGAIVRYR 404
Query: 246 LGIHSVPM-----IEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
GI P+ I+KS M+ Y+ RTGI+ ++ G + L N TAT +L++
Sbjct: 405 GGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSL-NKTATGQALLQAQ 463
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
G E + R AQ L LF+ L L+I D + +++ + + DP
Sbjct: 464 GQQMEEYVARNFAQSLGRLFQKKLWLMIASGDPM-AIKVEGLYKTVDP 510
>gi|227821703|ref|YP_002825673.1| hypothetical protein NGR_c11350 [Sinorhizobium fredii NGR234]
gi|227340702|gb|ACP24920.1| hypothetical protein NGR_c11350 [Sinorhizobium fredii NGR234]
Length = 348
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 104/165 (63%), Gaps = 15/165 (9%)
Query: 10 LIKDSDVEVLEH-SHRED-----GGEKV--HDLRIRRKYSQGKVCVDAVSPDEFLIHPDS 61
L+ D DVEVLE S++E G + V +++RIRR G + AV +EFLIHPD+
Sbjct: 156 LVADDDVEVLEQESYQEQIDTPQGPQSVTLYNVRIRRTKEYGCTKLAAVPLEEFLIHPDA 215
Query: 62 VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKF-----PKNQYSD- 115
+ I+ SPI G K L RSDL++MGYDRE ++ SS N E T +F P ++ +
Sbjct: 216 MSIDDSPITGIKTRLRRSDLVAMGYDREKVDKFATASSSNEEETEEFARRREPFDEKDEI 275
Query: 116 -KALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEE 159
KAL+ ++YYELYV ID D DGIAELRR+ AGG + N+L +EE
Sbjct: 276 IKALQEVDYYELYVKIDVDDDGIAELRRMCFAGGLAEVNLLDDEE 320
>gi|288817860|ref|YP_003432207.1| putative portal protein [Hydrogenobacter thermophilus TK-6]
gi|288787259|dbj|BAI69006.1| putative portal protein [Hydrogenobacter thermophilus TK-6]
Length = 618
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 177/345 (51%), Gaps = 31/345 (8%)
Query: 25 EDGGEKVHDLRIR-RKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVG-RKL----YLTR 78
+D G ++ + ++ + S+ + C++ V EF+ HP ++ ++ SP V RK+ YL R
Sbjct: 172 QDLGNGIYRVALKISRLSKNQPCLENVPATEFIFHPSTLSVKDSPFVAHRKVVTVDYLKR 231
Query: 79 SDL--ISMGYDR--ESINNLPIISSQNIENTWKFPKNQYS------DKALEMIEYYELYV 128
+ I D+ ES ++ + +Q + K P +Y+ D A + YE Y
Sbjct: 232 KEKEGIYKNVDKVIESASSDDLRYTQMADYYLK-PYKKYAVSESDQDLARRKVLLYECYT 290
Query: 129 TIDYDGDGIAELRRVIMAGGTGKDNILCNEE--WNELPFTCLRAMRAPHCFIGESLAASI 186
D + DG+ L VI+ G + IL +E + PF L + P+ G+S A +
Sbjct: 291 KYDINNDGL--LEDVIIT--VGNNTILRIQENIYGRPPFFVLAPILEPYQLWGKSFADVL 346
Query: 187 IEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKP-IRVAAGMDIR-S 244
+IQ +KT L+ Q + N+ N + + + ++++ + ++N KP IR+ AG DIR +
Sbjct: 347 KDIQDLKTALVNQIIVNVGMNNDYKIAIND-TLVNVQDIVN---DKPVIRMKAGADIRQA 402
Query: 245 VLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQ 304
++ + + P+ SF+ L Y++ +RTGI+ + G L N TA+ S+I Q+ +
Sbjct: 403 IMPLPTQPLAPWSFNFLEYIEGTKENRTGITRYNQGLDGRSL-NKTASGISMIMQAANQR 461
Query: 305 VELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ELI R A+ G++ LF L+ L Q D+ ++RL ++ + P
Sbjct: 462 LELIARIFAETGIKDLFSFLVYLNQQFIDQKTVIRLTNKSLPIAP 506
>gi|308751459|gb|ADO44942.1| hypothetical protein Hydth_0542 [Hydrogenobacter thermophilus TK-6]
Length = 618
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 177/345 (51%), Gaps = 31/345 (8%)
Query: 25 EDGGEKVHDLRIR-RKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVG-RKL----YLTR 78
+D G ++ + ++ + S+ + C++ V EF+ HP ++ ++ SP V RK+ YL R
Sbjct: 172 QDLGNGIYRVALKISRLSKNQPCLENVPATEFIFHPSTLSVKDSPFVAHRKVVTVDYLKR 231
Query: 79 SDL--ISMGYDR--ESINNLPIISSQNIENTWKFPKNQYS------DKALEMIEYYELYV 128
+ I D+ ES ++ + +Q + K P +Y+ D A + YE Y
Sbjct: 232 KEKEGIYKNVDKVIESASSDDLRYTQMADYYLK-PYKKYAVSESDQDLARRKVLLYECYT 290
Query: 129 TIDYDGDGIAELRRVIMAGGTGKDNILCNEE--WNELPFTCLRAMRAPHCFIGESLAASI 186
D + DG+ L VI+ G + IL +E + PF L + P+ G+S A +
Sbjct: 291 KYDINNDGL--LEDVIIT--VGNNTILRIQENIYGRPPFFVLAPILEPYQLWGKSFADVL 346
Query: 187 IEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKP-IRVAAGMDIR-S 244
+IQ +KT L+ Q + N+ N + + + ++++ + ++N KP IR+ AG DIR +
Sbjct: 347 KDIQDLKTALVNQIIVNVGMNNDYKIAIND-TLVNVQDIVN---DKPVIRMKAGADIRQA 402
Query: 245 VLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQ 304
++ + + P+ SF+ L Y++ +RTGI+ + G L N TA+ S+I Q+ +
Sbjct: 403 IMPLPTQPLAPWSFNFLEYIEGTKENRTGITRYNQGLDGRSL-NKTASGISMIMQAANQR 461
Query: 305 VELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ELI R A+ G++ LF L+ L Q D+ ++RL ++ + P
Sbjct: 462 LELIARIFAETGIKDLFSFLVYLNQQFIDQKTVIRLTNKSLPIAP 506
>gi|316934283|ref|YP_004109265.1| putative portal protein [Rhodopseudomonas palustris DX-1]
gi|315601997|gb|ADU44532.1| putative portal protein [Rhodopseudomonas palustris DX-1]
Length = 673
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 21/314 (6%)
Query: 47 VDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTW 106
V+ V P+EF S + GRK TR++LIS GY R+ ++ + + S ++
Sbjct: 197 VEVVPPEEFYSDA-SKKRRQDGTRGRKTLKTRAELISEGYPRDKVSKVRVSSEIEFDSER 255
Query: 107 KFPKNQYSD--------KALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNE 158
+ + +D L+ I +E ++ + GDG A L R++ A G ++
Sbjct: 256 QERDRETNDGIGSDAPQSELDQILVHETFIQLSLKGDGKASLYRIVHADG----HLFEMG 311
Query: 159 EWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGS 218
E + F +R PH G + + I+ Q +TV+ R LD+ N P+ V S
Sbjct: 312 EVADDNFLDFVPLRRPHSQFGNNFSKRIVPTQNARTVITRSILDHAATVNNPRWTVLNNS 371
Query: 219 IIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS-FSMLHYLDQELVDRTGISDI 277
+ +P+ +L+ + +R + R +GI P + + F +L L + TGIS +
Sbjct: 372 LSNPKELLDAR----LRGVVNVKNRDAIGILPYPQLNNAVFPLLEMLKTNKEETTGISSL 427
Query: 278 SSGFSPEIL--QNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVR 335
S G + + + QN LI S Q ++I R A L LF +++I++Q + +
Sbjct: 428 SQGLNKDAISSQNSQGMVNDLITVSQTRQ-KIIARNFAMFLHDLFLAARKVVIENQTRKK 486
Query: 336 MVRLRDQWVSFDPR 349
+ + + + DPR
Sbjct: 487 VWEFDNNFQNIDPR 500
>gi|167583563|ref|YP_001671753.1| portal protein [Enterobacteria phage phiEco32]
gi|164375401|gb|ABY52809.1| portal protein [Enterobacteria phage phiEco32]
Length = 747
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 145/312 (46%), Gaps = 26/312 (8%)
Query: 33 DLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESIN 92
D+++ + + +V V+ V ++ + + + ++ ++ DL++MG+ ++ I
Sbjct: 186 DVKVTYEQTVKRVKVEYVPSEQIFVDEHATSFADAQYFCHRVRRSKEDLVAMGFPKDEIE 245
Query: 93 --NLPIISSQNIENTWKFPKNQY-----------SDKALEMIEYYELYV-TIDYDGDGIA 138
N + ++T + + + ++ M+ YE Y+ T D + +
Sbjct: 246 AFNDWTDTMDTTQSTVAWSRTDWRQDIDADIGTDTEDIASMVWVYEHYIRTGVLDKNKES 305
Query: 139 ELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLR 198
+L +VI AG ++IL EE +PF P F G+S+ +IQ ++T L+R
Sbjct: 306 KLYQVIQAG----EHILHTEEVTHIPFVTFCPYPIPGSFYGQSVYDITKDIQDLRTALVR 361
Query: 199 QTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSF 258
+DN+ N + G+ D S+L+ + G + + D + H++P +
Sbjct: 362 GYIDNVNNANYGRYKALVGA-YDRRSLLDNRPGGVVEMER-QDAIDLFPYHNLP---QGI 416
Query: 259 SMLHYLDQELVD-RTGISDISSGFSPEILQNMTATAT-SLIEQSGVGQVELIVRTLAQ-G 315
L + +EL + RTG++ + G +P++ +N A AT L+ + ++ ++ R +A G
Sbjct: 417 DGLLGMSEELKETRTGVTKLGMGINPDVFKNDNAYATVGLMMNAAQNRLRMVCRNIAHNG 476
Query: 316 LEILFRGLLRLI 327
+ L RG+ LI
Sbjct: 477 MVELMRGIYSLI 488
>gi|307308935|ref|ZP_07588618.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
BL225C]
gi|306900569|gb|EFN31182.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
BL225C]
Length = 677
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 151/344 (43%), Gaps = 40/344 (11%)
Query: 27 GGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDS-VDIE----KSPIVGRKLYLTRSDL 81
GG +V D++IR + + V V P++ ++ D+ D E ++ + G + ++RS L
Sbjct: 184 GGVQVRDVKIRTVTRRSCINVFPVDPEDAVLSTDAQFDPETGGIRAKLQGHRKIMSRSVL 243
Query: 82 ISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKAL--EMIEYYELYVTIDYDGDGIAE 139
I +G+D+ +++ +P ++ + + K+ ++A +M+E Y +Y + D +
Sbjct: 244 IDLGFDKATVDRIPGVNEKTDGIALERLKDVSGERAFDKDMVEVYTVYTRLKL--DTTSR 301
Query: 140 LRRVIMAGGTGKDNILCNEEWNEL-PFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLR 198
R+ G + +L EE P+ G+ +A I E + + + R
Sbjct: 302 HYRITFGGDSANPILLDYEETTRFYPYAAFVPYPLAGTLFGQGIADRIGEDHEKISKMER 361
Query: 199 QTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAA---GMDI--RSVLGIHSVPM 253
D+L P T+V + + + N GK IR ++ G++ G + +
Sbjct: 362 AVQDSLNMSVFPITVVDDDVSSI-DDLTNLHPGKVIRSSSPNGGINFVQHPFTGAQATGI 420
Query: 254 IEKSFSMLHYLDQELVDRTGISDISSGFSPEI-------LQNMTATATSLIEQSGVGQVE 306
IE+ L+Q+L D S+G P++ LQ TATA + +E
Sbjct: 421 IER-------LEQKL-------DFSTGVGPQMMTLDASDLQRTTATAINQRSNQQQTLIE 466
Query: 307 LIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMV--RLRDQWVSFD 347
+ R A+ G L + ++ L++Q D+ + + RL ++ D
Sbjct: 467 TVSRFFAETGYRYLTKVIVDLLVQKPDESQELIGRLTGNFIPVD 510
>gi|282598927|ref|YP_003358477.1| N4 gp59-like protein [Pseudomonas phage LIT1]
gi|259048687|emb|CAZ66336.1| N4 gp59-like protein [Pseudomonas phage LIT1]
Length = 726
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 9/234 (3%)
Query: 113 YSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW---NELPFTCLR 169
+ DK+ + + +E + D GDG+ I+A G I E +P+ +
Sbjct: 314 FQDKSRKRLVVHEYWGYYDIHGDGVL---HPIVATWVGAVMIRMEENPFPDKRIPYVVVN 370
Query: 170 AMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQ 229
+ GES A +I+ Q+I + R +D + Q V +G+ +D +
Sbjct: 371 YIPRKRDLYGESDGALLIDNQRIIGAVTRGMIDTMARSANGQVGVMKGA-LDVTNRRRFD 429
Query: 230 FGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQ-ELVDRTGISDISSGFSPEILQN 288
G+ G D R+ + +H+ P I +S + L Q E TG+ ++G S L +
Sbjct: 430 RGENYEFNPGADPRAAVHMHTFPEIPQSAQYMINLQQAEAESMTGVKAFNAGISGAALGD 489
Query: 289 MTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ 342
TATA + + I+R L+ G+ + R ++ + + D V +VR+ ++
Sbjct: 490 -TATAVRGALDAASKRELGILRRLSAGIIEIGRKIIAMNAEFLDDVEVVRITNE 542
>gi|221271428|dbj|BAH15181.1| portal protein [Serratia phage KSP100]
Length = 374
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 259 SMLHYLDQELVDRTGISDISSGFSPEILQNMTATAT-SLIEQSGVGQVELIVRTLAQG-L 316
S+L ++Q RTG++ I G SPE+ +N + AT ++ + ++ ++ R +AQ +
Sbjct: 59 SILEQIEQAKERRTGVTRIGMGLSPEVFKNDNSFATVDMMMSAAQNRMRMVARNVAQNFM 118
Query: 317 EILFRGLLRLIIQHQD 332
LF + RL+ ++++
Sbjct: 119 TQLFLAIYRLLKENEN 134
>gi|319956914|ref|YP_004168177.1| hypothetical protein Nitsa_1175 [Nitratifractor salsuginis DSM
16511]
gi|319419318|gb|ADV46428.1| hypothetical protein Nitsa_1175 [Nitratifractor salsuginis DSM
16511]
Length = 561
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 179 GESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAA 238
G S +I +Q+ TV Q +D + + + + S ++ + +L+ + I V++
Sbjct: 269 GGSFIEPMIPLQEEYTVTRNQQIDAIAESLSKRFLATKTSGLNEKDLLSNR--TKISVSS 326
Query: 239 GMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIE 298
+++ + P I+ S + LD E+ + +GI+ + G + N TAT S++
Sbjct: 327 LNEVKEL----QAPRIDPSIFGIDRLDSEMQEVSGITKYNQGLNDPHNLNQTATGVSILT 382
Query: 299 QSGVGQVELIVRTLAQG-LEILFRGLLRLIIQH 330
+ G + IVR L + E R ++RLI ++
Sbjct: 383 EEGNAVIADIVRALNESFFEPAIRRMVRLIYKY 415
>gi|285018477|ref|YP_003376188.1| 3-phosphoshikimate 1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (epsp
synthase) (epsps) protein [Xanthomonas albilineans GPE
PC73]
gi|283473695|emb|CBA16198.1| probable 3-phosphoshikimate 1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (epsp
synthase) (epsps) protein [Xanthomonas albilineans]
Length = 437
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 16 VEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPD 53
+++EH+H E GGE V DLR+R +G + V PD
Sbjct: 280 ADIVEHNHSEHGGEPVADLRVRYALLRGAKIPETVVPD 317
>gi|84995979|ref|XP_952711.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303708|emb|CAI76085.1| hypothetical telomeric protein, conserved [Theileria annulata]
Length = 605
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 92 NNLPIISSQNIENTWKFPKNQYSDKALEMI--EYYELYVTIDYDGDGIAELRRVIMAGGT 149
+N P+ S Q+ ++ K+PK + + +MI ++ + Y+ YDG G+ + + G
Sbjct: 390 DNRPVWSFQSNDSENKYPKKVFFNSFTKMIIVDFSKFYMIYQYDGSGLYLISTDTLYGSL 449
Query: 150 GKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQ 209
D E +EL T + P +G + A +++ ++ +T+ W++
Sbjct: 450 ISDFKFIGENNSELAKTDYETVNYP---LGYAFACRFNKVKCVEFSFKNKTV----WKHN 502
Query: 210 PQTI 213
PQ +
Sbjct: 503 PQKM 506
>gi|226526985|ref|YP_002791004.1| putative nucleotidyltransferase/DNA polymerase [Lactobacillus
brevis]
gi|226442577|dbj|BAH56447.1| putative nucleotidyltransferase/DNA polymerase [Lactobacillus
brevis]
Length = 433
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 69 IVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMI 121
++G +LY ++ G DR + N PI+ SQ+I N+ PK+ S A+E +
Sbjct: 235 VIGLQLYA-----VAWGVDRSQLKNKPIVKSQSIGNSQVLPKDYRSQAAIETV 282
Searching..................................................done
Results from round 2
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040822|gb|ACT57618.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats.
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD 60
MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD
Sbjct: 1 MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD 60
Query: 61 SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120
SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM
Sbjct: 61 SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120
Query: 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE 180
IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE
Sbjct: 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE 180
Query: 181 SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM 240
SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM
Sbjct: 181 SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM 240
Query: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS
Sbjct: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY
Sbjct: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
>gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495937|gb|ADR52536.1| hypothetical protein CKC_03935 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 637
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 294/343 (85%), Positives = 316/343 (92%), Gaps = 1/343 (0%)
Query: 9 MLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSP 68
+LI D +VEVLEH+ R+D E +HD+RIRRKYSQGKVCVDAV PDEFLIHPD+ DIEKSP
Sbjct: 156 LLISDPEVEVLEHTQRKDREEIIHDIRIRRKYSQGKVCVDAVPPDEFLIHPDATDIEKSP 215
Query: 69 IVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYV 128
IVGRKLYLTRSDLISMGYDR+ IN L + SSQ EN+W+ K +SD ALEMIEYYELYV
Sbjct: 216 IVGRKLYLTRSDLISMGYDRKYINQLQVASSQGNENSWQLSKYHHSDTALEMIEYYELYV 275
Query: 129 TIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIE 188
T+DYD DGIAELRRV+M GGTGKDNIL NEEW+ELPFTCLRA+RAPHCF+GESLA+SIIE
Sbjct: 276 TLDYDNDGIAELRRVVMVGGTGKDNILVNEEWDELPFTCLRAIRAPHCFVGESLASSIIE 335
Query: 189 IQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGI 248
IQKIKTVLLRQTLDNLYWQNQPQTIVQEGSI+DPESVLNPQFGKPIRV +GMDIRSVLGI
Sbjct: 336 IQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIVDPESVLNPQFGKPIRVVSGMDIRSVLGI 395
Query: 249 HSVPMIE-KSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVEL 307
HSVPMI KSFSMLHYLDQELVDRTGISDISSG SPEILQNMTATATSLIEQSGVGQVEL
Sbjct: 396 HSVPMIADKSFSMLHYLDQELVDRTGISDISSGLSPEILQNMTATATSLIEQSGVGQVEL 455
Query: 308 IVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
IVRTLAQGLE LFRGLLRLIIQHQDKVRMVRLRDQW+SFDPR+
Sbjct: 456 IVRTLAQGLERLFRGLLRLIIQHQDKVRMVRLRDQWISFDPRH 498
>gi|227822448|ref|YP_002826420.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
gi|227341449|gb|ACP25667.1| hypothetical protein NGR_c19030 [Sinorhizobium fredii NGR234]
Length = 684
Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats.
Identities = 188/357 (52%), Positives = 248/357 (69%), Gaps = 16/357 (4%)
Query: 10 LIKDSDVEVLEHSHREDGGEK--------VHDLRIRRKYSQGKVCVDAVSPDEFLIHPDS 61
LI D +VEV+E S + E + ++IRR+ +G + AV +EFLIHP++
Sbjct: 156 LIGDDEVEVVEQSRTTEKIETPQGMVEQPSYSVKIRRRLERGTPRLAAVPLEEFLIHPEA 215
Query: 62 VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKN-------QYS 114
+ I SPI G + RSDLI+ GYDR+ I LP + + + +F +
Sbjct: 216 ISIADSPIAGIATRMRRSDLIATGYDRDLIEGLPASTGDSGRDDEEFTRRRGVFEAKDAV 275
Query: 115 DKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAP 174
KALE ++YYELYV +D D DGIAELRR+++AGGTG++++L NEEW+E+PF L R P
Sbjct: 276 PKALEEVDYYELYVKVDADDDGIAELRRLVLAGGTGEEHLLSNEEWDEVPFADLIIERRP 335
Query: 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
H G S+ + EIQ++KTVL+RQTLDNLYWQN Q IVQEG+I +PESVLNP+F +PI
Sbjct: 336 HQREGGSVTDDMAEIQRVKTVLMRQTLDNLYWQNNQQPIVQEGAIANPESVLNPKFAQPI 395
Query: 235 RVAAGMDIRSVLGIHSVPMIEK-SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATA 293
RV+ G+D R+ LG VP + K SF+ML YLDQE DRTGISD SSG +P+ L NMTA A
Sbjct: 396 RVSQGIDARAALGYTMVPFVAKESFAMLSYLDQEATDRTGISDASSGLAPDALTNMTARA 455
Query: 294 TSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
T+LIEQ+G+GQ EL+VRT AQGL +F+GLLRL+I+HQD+ R VRLR QWV+FDPR+
Sbjct: 456 TALIEQAGIGQTELMVRTFAQGLRRVFKGLLRLVIKHQDRPRAVRLRGQWVTFDPRH 512
>gi|150397041|ref|YP_001327508.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
gi|150028556|gb|ABR60673.1| hypothetical protein Smed_1838 [Sinorhizobium medicae WSM419]
Length = 683
Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats.
Identities = 189/356 (53%), Positives = 251/356 (70%), Gaps = 15/356 (4%)
Query: 10 LIKDSDVEVLEHSH---REDGGEKV-----HDLRIRRKYSQGKVCVDAVSPDEFLIHPDS 61
L+ D +VEVLE S R + + V + ++IRR+ +G + AV +EFLIHPD+
Sbjct: 156 LVGDDEVEVLEQSQTVERMETPQGVVEQPSYSVKIRRRAERGTPRLAAVPLEEFLIHPDA 215
Query: 62 VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWK------FPKNQYSD 115
+ I SPI G + + RSDL++MG+DR+ I+ LP + ++ F
Sbjct: 216 ISIADSPITGFAMRMRRSDLVAMGHDRDLIDGLPAAEAGGRDDEASTRRRDAFETKDAVP 275
Query: 116 KALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPH 175
KALE ++YYELYV +D D DGIAELRR++ AGGT ++N+L NEEW+E+PF L R PH
Sbjct: 276 KALEEVDYYELYVKVDADDDGIAELRRLVFAGGTSEENLLSNEEWDEVPFADLTVERRPH 335
Query: 176 CFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIR 235
G S+ + EIQ++KTVL+RQTLDNLYWQN Q IVQEG+I +PE+VLNP+FG+PIR
Sbjct: 336 QREGGSVTGDMAEIQRVKTVLMRQTLDNLYWQNNQQPIVQEGAIANPEAVLNPKFGQPIR 395
Query: 236 VAAGMDIRSVLGIHSVPMIEK-SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATAT 294
V+ G+D R+ LG VP + K SF+ML YLDQE DRTGISD SSG +P+ LQNMTA AT
Sbjct: 396 VSQGIDARAALGYTMVPFVAKESFAMLSYLDQEATDRTGISDASSGMAPDALQNMTARAT 455
Query: 295 SLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
+L+EQ+G+GQ EL+VRT AQGL +FRGLLRL+++HQD+ R VRLR QWV+FDPR+
Sbjct: 456 ALVEQAGIGQTELMVRTFAQGLRRVFRGLLRLVVKHQDRPRAVRLRGQWVTFDPRH 511
>gi|291334599|gb|ADD94249.1| hypothetical protein Daci_1943 [uncultured phage
MedDCM-OCT-S04-C136]
Length = 741
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 103/348 (29%), Positives = 196/348 (56%), Gaps = 12/348 (3%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
++K +++ ++ S + +++ +I+R G+V ++++ P+EFLI + IE +
Sbjct: 185 VLKQYEMQGVDISQVQVPNFNLYNCKIKRIKKTGRVKIESIPPEEFLIDRSAKTIEDADF 244
Query: 70 VGRKLYLTRSDLISMGYDRESINNLPIISSQ--NIENTWKFPK------NQYSDKALEMI 121
V K+ +TRSDL++MGY ++ ++ LP N E T + + +D + E +
Sbjct: 245 VSHKVLMTRSDLVAMGYPQDEVDELPKSDLDIYNDEETVRLADVDDYRISSSTDTSTEKV 304
Query: 122 EYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGES 181
YE YV DYD DGIAELR+++ AG G +IL N + +PF + + PH F G S
Sbjct: 305 LVYESYVKYDYDEDGIAELRKIVSAGADGH-HILSNMPCDSVPFVTITPIPMPHRFYGRS 363
Query: 182 LAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMD 241
++ + ++Q +K+ ++RQ LDN+Y N + V +G +++ + +L + G +R +
Sbjct: 364 ISELVEDVQLMKSTVMRQLLDNMYLTNNNRVAVMDG-MVNMDDLLTTRPGGIVRTKQPPN 422
Query: 242 IRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSG 301
+ + + + P+ +++F +L YLD RTG+S + G SP+ L TAT + + Q
Sbjct: 423 -QVMQPLQAQPISQQAFPLLSYLDSVREGRTGVSKEAQGLSPDTLNAKTATGVNALMQQT 481
Query: 302 VGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ ELI R A+ G++ LF+ + L++++QDK +++ + +Q++ P
Sbjct: 482 QMRSELIARVFAETGVKDLFKKIFELMVKYQDKEKIIMMSNQYIPVRP 529
>gi|291334641|gb|ADD94289.1| portal protein [uncultured phage MedDCM-OCT-S04-C64]
Length = 755
Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats.
Identities = 102/356 (28%), Positives = 182/356 (51%), Gaps = 20/356 (5%)
Query: 10 LIKDSDV--EVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVD--IE 65
L+ D +V E++E S + E ++ + G + ++ V P+EF I ++ +E
Sbjct: 157 LLSDPNVQRELIEDSIEQT--EFGLNVEFKVIEKMGSIRIEPVPPEEFGIARNARSPYVE 214
Query: 66 KSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTW--------KFPKNQYSDKA 117
+ + + S+L++MGYD E I +LP S E + P + S+++
Sbjct: 215 DTNFCYHRTLKSFSELVAMGYDVELIRSLPFDESAMTEEELARRNKTDEEEPFDYVSEES 274
Query: 118 LEMIEYYELYVTIDYDGDGIAELRRVIMAGG---TGKDNILCNEEWNELPFTCLRAMRAP 174
+ E Y+ ID DGD IAEL RV +AGG +G +L EE + +PF + P
Sbjct: 275 MRNYFITECYIKIDRDGDDIAELLRVTLAGGNYTSGSSRLLGIEEVDHMPFATCSPILMP 334
Query: 175 HCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
H F G S+A +++Q+IK+VL RQ LDN Y N +T V + S ++ + +L + G +
Sbjct: 335 HKFYGLSIADITMDLQRIKSVLTRQMLDNTYLANNSRTAVND-SHVNLDDLLTSRPGGVV 393
Query: 235 RVAA-GMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATA 293
R G + + I P+ ++++M+ YLD RTG+ D ++G L N+
Sbjct: 394 RYKGEGSASQYITPIPHNPLPNEAYTMMGYLDDVRRQRTGVGDETAGLGENSLSNVNTGV 453
Query: 294 TSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+L + ++ELI R L + G + +FR + +L+++HQD+ ++ + + + +P
Sbjct: 454 AALAFDAKRMKIELIARILGEVGFKDVFRLIHKLLMKHQDRKMLLNVAGNFQAINP 509
>gi|160897386|ref|YP_001562968.1| hypothetical protein Daci_1943 [Delftia acidovorans SPH-1]
gi|160362970|gb|ABX34583.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
Length = 763
Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats.
Identities = 109/335 (32%), Positives = 164/335 (48%), Gaps = 22/335 (6%)
Query: 28 GEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYD 87
+ + D+ +R G+V V+ V P+EFLI + IE + VG ++ T S+L SMGY
Sbjct: 228 PKMLWDVVCKRVKKGGRVRVENVPPEEFLISRKAKSIEDASFVGHRVARTISELKSMGYK 287
Query: 88 R-ESINNLPIISSQNIEN-----------TWKFPKNQYSDKALEMIEYYELYVTIDYDGD 135
+ I + +S N+E + Q D + I E Y+ DYDGD
Sbjct: 288 NVDDITSDDQAASLNMERIERLSWDDEMAYLQMDNVQSMDTSQRQIWVTECYLRCDYDGD 347
Query: 136 GIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTV 195
GIAELR+V+ AG + IL NE + PF + + PH F G S+A +E Q+I T+
Sbjct: 348 GIAELRKVVRAG----NQILENEVCDVAPFVSITPVPMPHKFFGLSVADLALEGQRINTI 403
Query: 196 LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVA-AGMDIRSVLGIHSVPMI 254
LLR LDN + + EG ++ + +L + G +R+ AGM R G + +
Sbjct: 404 LLRNQLDNNNLEVNGRYFAVEGQ-VNLDDLLTSRPGGVVRMKSAGMAGRLDQGAGNSGL- 461
Query: 255 EKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ 314
+ M+ Y+ D TG + + G + L N TAT + I +++LI R A
Sbjct: 462 --NLQMMEYMKGFQEDSTGWTRYNQGSDGDSL-NQTATGVNQIVNRADMRLDLIARNYAD 518
Query: 315 GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
G LFR +L+L Q+Q MV+LR +WV PR
Sbjct: 519 GFRELFRLMLKLCSQYQQTEDMVKLRGKWVPVSPR 553
>gi|294083946|ref|YP_003550703.1| putative portal protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663518|gb|ADE38619.1| putative portal protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 697
Score = 342 bits (876), Expect = 6e-92, Method: Composition-based stats.
Identities = 92/358 (25%), Positives = 169/358 (47%), Gaps = 27/358 (7%)
Query: 7 IHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEK 66
+ ML+ DV++++ S +D G + + R SQ V ++ + P+E ++ +E+
Sbjct: 180 LDMLLAQDDVDLIDSS-TDDVGMVSGTIGVTRDTSQ--VVIETIPPEELIVEAQCKSLEE 236
Query: 67 SPIVGRKLYLTRSDLISMGYDRESINNLP-------------IISSQNIENTWKFPKNQY 113
S + T S+L M D + ++++ + + F + Y
Sbjct: 237 STFSAHRTRKTLSELREMYPDSDKLDDIGDHEDVEMETDPEILARHDGVSENRGFSSHGY 296
Query: 114 SDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRA 173
D+ I YE Y+ +D +G GIA+L +V AG + +L EE PF +
Sbjct: 297 QDQVRH-ILCYEAYIMLDVEGSGIAKLHKVTKAG----NVLLDIEEVKRRPFVTFCPLPI 351
Query: 174 PHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKP 233
PH F G + A + Q +TVL R LD+ N P+ +V +G + +P +++ + G
Sbjct: 352 PHAFYGSNFAEKLCATQNARTVLTRSILDHAMITNNPRYMVVKGGLSNPRELIDNRVGGL 411
Query: 234 IRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEIL--QNMTA 291
+ V+ ++ + P+ F L LDQ+L D TG+S +S G + + + QN A
Sbjct: 412 VNVSRP---DAISAMPQAPLNPFVFQTLQQLDQDLEDNTGVSRLSQGLNKDAISKQNSAA 468
Query: 292 TATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
L S Q +++ R AQ ++ LF + RL+++++D+ ++V + +V DPR
Sbjct: 469 MVEQLATMSQQRQ-KILARHFAQFVKSLFHEIYRLVVENEDQQKIVEISGAYVEVDPR 525
>gi|167600438|ref|YP_001671938.1| portal protein [Pseudomonas phage LUZ24]
gi|161168301|emb|CAP45466.1| portal protein [Pseudomonas phage LUZ24]
Length = 706
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 182/354 (51%), Gaps = 26/354 (7%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
++ D D E+L S EDG + ++IR+ + ++ V + P+ FL+ + I+ +
Sbjct: 163 ILADPDTEILAQSVDEDG---TYSIKIRKDKKKREIKVTCIKPENFLVDRLATCIDDARF 219
Query: 70 VGRKLYLTRSDLISMGYDRESINNLPIIS------------SQNIENTWKFPKNQYSD-K 116
+ + T SDL +G + ++ LP N + T + N D +
Sbjct: 220 LCHREKYTVSDLRLLGVPEDVLDELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAE 279
Query: 117 ALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHC 176
A + E Y +D DGDGI+ELRR++ G D I+ NE W+ PF L A R H
Sbjct: 280 ANREVWASECYTLLDVDGDGISELRRILYVG----DYIISNEPWDSRPFADLNAYRIAHK 335
Query: 177 FIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236
F G S+ I +IQ+I++VL+R +DN+Y NQ +++V +G ++ E +L + +RV
Sbjct: 336 FHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQ-VNLEDLLTNEAAGIVRV 394
Query: 237 AAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQ-NMTATATS 295
A + S++ + + + + + ML L+ + RTGI+D + G L N A + +
Sbjct: 395 KA---MNSIMPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVN 451
Query: 296 LIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ + Q++LI R A+ G++ LF+ L I++Q++ + +LR +WV+ +P
Sbjct: 452 QLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAINP 505
>gi|148257059|ref|YP_001241644.1| hypothetical protein BBta_5791 [Bradyrhizobium sp. BTAi1]
gi|146409232|gb|ABQ37738.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 557
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 24/338 (7%)
Query: 30 KVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLY-LTRSDLISMGYDR 88
HD+ I + V V P+EF I + I ++ T + LI+ G+D
Sbjct: 18 TTHDVTIVTTRKFAQARVMGVPPEEFGIERGARSIRDCNYCFHEIVTKTEAQLIAEGFDA 77
Query: 89 ESINNL-PIISSQNIENTWKFPKNQ-------YSDKALEMIEYYELYVTIDYDGDGIAEL 140
I +L + +E + ++ ++ ++ E YV +DY+G+G L
Sbjct: 78 AQIRSLGDYAGTTRVETLARDTVDEQSRASASAANSGTRLVRITEHYVRMDYEGEGRPCL 137
Query: 141 RRVIMAGGTG----KDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVL 196
++I G G KD C ++ +PF + H F G S+A ++ +Q+ KT L
Sbjct: 138 YQIITGGDQGEILRKDGQDCITPFDAIPFAATTPVPMTHRFFGRSIADLVMPLQREKTAL 197
Query: 197 LRQTLDNLYWQNQPQTIVQEGSI--IDPESVLNPQFGKPIRVA--AGMDIRSVLGIHSVP 252
R LDNLY N P+ V E + + +L + G +R G++ + V P
Sbjct: 198 KRGALDNLYLHNNPRVEVAEANAGPNTLDDLLVSRPGGVVRTKTAGGLNWQVV------P 251
Query: 253 MIEKS-FSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRT 311
I S + ML Y+D EL R+G+S + G LQN +ATA + + + +++LI R
Sbjct: 252 DITSSIYPMLQYIDAELESRSGLSKQAQGIDANALQNQSATAVAQVFSASQMRIKLIARI 311
Query: 312 LAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
+A+G+ +F L I +H + + VRLR+ WV DPR
Sbjct: 312 MAEGVRDMFGLLHATIRKHGQQRQTVRLRNAWVQVDPR 349
>gi|27476052|ref|NP_775254.1| putative portal protein [Pseudomonas phage PaP3]
gi|27414482|gb|AAL85568.1| ORF.04 [Pseudomonas phage PaP3]
Length = 705
Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 26/354 (7%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
++ D D +L S +DG + ++IR+ + ++ V V P+ FL+ + I+ +
Sbjct: 162 ILSDPDTSILAQSVDDDG---TYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARF 218
Query: 70 VGRKLYLTRSDLISMGYDRESINNLPIIS------------SQNIENTWKFPKNQYSD-K 116
+ + T SDL +G + I LP N + T + N D +
Sbjct: 219 LCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAE 278
Query: 117 ALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHC 176
A + E Y +D DGDGI+ELRR++ G D I+ NE W+ PF L A R H
Sbjct: 279 ANREVWASECYTLLDVDGDGISELRRILYVG----DYIISNEPWDCRPFADLNAYRIAHK 334
Query: 177 FIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236
F G S+ I +IQ+I++VL+R +DN+Y NQ +++V +G ++ E +L + +RV
Sbjct: 335 FHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQ-VNLEDLLTNEAAGIVRV 393
Query: 237 AAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQ-NMTATATS 295
+ + S+ + + + + + ML L+ + RTGI+D + G L N A + +
Sbjct: 394 KS---MNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVN 450
Query: 296 LIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ + Q++LI R A+ G++ LF+ L I++Q++ + +LR +WV+ +P
Sbjct: 451 QLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNP 504
>gi|221199509|ref|ZP_03572553.1| putative portal protein [Burkholderia multivorans CGD2M]
gi|221205589|ref|ZP_03578604.1| putative portal protein [Burkholderia multivorans CGD2]
gi|221174427|gb|EEE06859.1| putative portal protein [Burkholderia multivorans CGD2]
gi|221180794|gb|EEE13197.1| putative portal protein [Burkholderia multivorans CGD2M]
Length = 807
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 100/335 (29%), Positives = 166/335 (49%), Gaps = 24/335 (7%)
Query: 30 KVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDR- 88
++H++ + R G V ++AV P++FL+ S I ++ T SDL + GY+
Sbjct: 272 RLHNVVLTRSKKAGHVAIEAVMPEDFLVSARSRRIRD-GFCAHRVRKTLSDLKAEGYENV 330
Query: 89 ESINNLP----------IISSQNIEN--TWKFPKNQYSDKALEMIEYYELYVTIDYDGDG 136
E I++ P ++ QN +N + + D++ +E YE Y+ ID DGDG
Sbjct: 331 ELIDSEPNAVAADLSELALARQNEQNRVVTNALDDGFGDESQREVELYECYLPIDVDGDG 390
Query: 137 IAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVL 196
I+E R++ AG IL NE + PF + + P IG S+A + IQ+IKT
Sbjct: 391 ISEWRKITKAGNA----ILDNEVVDGPPFALVSPISIPGLLIGRSIADLAMPIQRIKTKF 446
Query: 197 LRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEK 256
LR DN+ Q + + +G ++ ++ + G +R+ + I + +P I
Sbjct: 447 LRGLDDNMQIQINGRVGLVDGK-VNVNDWMDNRPGGGVRIKSADAIVPIK--QGLPDIAG 503
Query: 257 SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-G 315
+ +L Y+D +RTGI+ S G + L N TA I +V++I R A+ G
Sbjct: 504 AMQLLQYVDAMSQERTGITKYSQGLDADTL-NHTADGIKRITARADLRVKMIARKFAETG 562
Query: 316 LEILFRGLLRLIIQHQDKVRMVRL-RDQWVSFDPR 349
+ LFR + +L++QHQDK + L + +WV DPR
Sbjct: 563 VTDLFRLIQKLLMQHQDKPMSIALSKGKWVDIDPR 597
>gi|288817860|ref|YP_003432207.1| putative portal protein [Hydrogenobacter thermophilus TK-6]
gi|288787259|dbj|BAI69006.1| putative portal protein [Hydrogenobacter thermophilus TK-6]
Length = 618
Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats.
Identities = 93/366 (25%), Positives = 180/366 (49%), Gaps = 33/366 (9%)
Query: 8 HMLIKDSDVEVLEHSHR------EDGGEKVHDLRIR-RKYSQGKVCVDAVSPDEFLIHPD 60
+++ ++++ +H +D G ++ + ++ + S+ + C++ V EF+ HP
Sbjct: 149 EIVLGWDELQLAQHDPTAVVESAQDLGNGIYRVALKISRLSKNQPCLENVPATEFIFHPS 208
Query: 61 SVDIEKSPIVGRKL-----YLTRSDL--ISMGYDR--ESINNLPIISSQNIENTWKFPKN 111
++ ++ SP V + YL R + I D+ ES ++ + +Q + K K
Sbjct: 209 TLSVKDSPFVAHRKVVTVDYLKRKEKEGIYKNVDKVIESASSDDLRYTQMADYYLKPYKK 268
Query: 112 QY-----SDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEE--WNELP 164
D A + YE Y D + DG+ L VI+ G + IL +E + P
Sbjct: 269 YAVSESDQDLARRKVLLYECYTKYDINNDGL--LEDVIIT--VGNNTILRIQENIYGRPP 324
Query: 165 FTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPES 224
F L + P+ G+S A + +IQ +KT L+ Q + N+ N + + + ++++ +
Sbjct: 325 FFVLAPILEPYQLWGKSFADVLKDIQDLKTALVNQIIVNVGMNNDYKIAIND-TLVNVQD 383
Query: 225 VLNPQFGKPIRVAAGMDIR-SVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSP 283
++N + IR+ AG DIR +++ + + P+ SF+ L Y++ +RTGI+ + G
Sbjct: 384 IVNDKP--VIRMKAGADIRQAIMPLPTQPLAPWSFNFLEYIEGTKENRTGITRYNQGLDG 441
Query: 284 EILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQ 342
L N TA+ S+I Q+ ++ELI R A+ G++ LF L+ L Q D+ ++RL ++
Sbjct: 442 RSL-NKTASGISMIMQAANQRLELIARIFAETGIKDLFSFLVYLNQQFIDQKTVIRLTNK 500
Query: 343 WVSFDP 348
+ P
Sbjct: 501 SLPIAP 506
>gi|308751459|gb|ADO44942.1| hypothetical protein Hydth_0542 [Hydrogenobacter thermophilus TK-6]
Length = 618
Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats.
Identities = 93/366 (25%), Positives = 180/366 (49%), Gaps = 33/366 (9%)
Query: 8 HMLIKDSDVEVLEHSHR------EDGGEKVHDLRIR-RKYSQGKVCVDAVSPDEFLIHPD 60
+++ ++++ +H +D G ++ + ++ + S+ + C++ V EF+ HP
Sbjct: 149 EIVLGWDELQLAQHDPTAVVESAQDLGNGIYRVALKISRLSKNQPCLENVPATEFIFHPS 208
Query: 61 SVDIEKSPIVGRKL-----YLTRSDL--ISMGYDR--ESINNLPIISSQNIENTWKFPKN 111
++ ++ SP V + YL R + I D+ ES ++ + +Q + K K
Sbjct: 209 TLSVKDSPFVAHRKVVTVDYLKRKEKEGIYKNVDKVIESASSDDLRYTQMADYYLKPYKK 268
Query: 112 QY-----SDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEE--WNELP 164
D A + YE Y D + DG+ L VI+ G + IL +E + P
Sbjct: 269 YAVSESDQDLARRKVLLYECYTKYDINNDGL--LEDVIIT--VGNNTILRIQENIYGRPP 324
Query: 165 FTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPES 224
F L + P+ G+S A + +IQ +KT L+ Q + N+ N + + + ++++ +
Sbjct: 325 FFVLAPILEPYQLWGKSFADVLKDIQDLKTALVNQIIVNVGMNNDYKIAIND-TLVNVQD 383
Query: 225 VLNPQFGKPIRVAAGMDIR-SVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSP 283
++N + IR+ AG DIR +++ + + P+ SF+ L Y++ +RTGI+ + G
Sbjct: 384 IVNDKP--VIRMKAGADIRQAIMPLPTQPLAPWSFNFLEYIEGTKENRTGITRYNQGLDG 441
Query: 284 EILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQ 342
L N TA+ S+I Q+ ++ELI R A+ G++ LF L+ L Q D+ ++RL ++
Sbjct: 442 RSL-NKTASGISMIMQAANQRLELIARIFAETGIKDLFSFLVYLNQQFIDQKTVIRLTNK 500
Query: 343 WVSFDP 348
+ P
Sbjct: 501 SLPIAP 506
>gi|291334834|gb|ADD94474.1| hypothetical protein CLIBASIA_05245 [uncultured phage
MedDCM-OCT-S06-C1041]
Length = 265
Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats.
Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 14/264 (5%)
Query: 84 MGYDRESINNLPIISSQNIENTW--------KFPKNQYSDKALEMIEYYELYVTIDYDGD 135
MGYD E I +LP S E + P + S++++ E Y+ ID DGD
Sbjct: 1 MGYDVELIRSLPFDESAMTEEELARRNKTDEEEPFDYVSEESMRNYFITECYIKIDRDGD 60
Query: 136 GIAELRRVIMAGG---TGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKI 192
IAEL RV +AGG +G +L EE + +PF + PH F G S+A +++Q+I
Sbjct: 61 DIAELLRVTLAGGNYTSGSSRLLGIEEVDHMPFATCSPILMPHKFYGLSIADITMDLQRI 120
Query: 193 KTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAA-GMDIRSVLGIHSV 251
K+VL RQ LDN Y N +T V + S ++ + +L + G +R G + + I
Sbjct: 121 KSVLTRQMLDNTYLANNSRTAVND-SHVNLDDLLTSRPGGVVRYKGEGSASQYITPIPHN 179
Query: 252 PMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRT 311
P+ ++++M+ YLD RTG+ D ++G L N+ +L + ++ELI R
Sbjct: 180 PLPNEAYTMMGYLDDVRRQRTGVGDETAGLGENSLSNVNTGVAALAFDAKRMKIELIARI 239
Query: 312 LAQ-GLEILFRGLLRLIIQHQDKV 334
L + G + +FR + +L+++HQD+
Sbjct: 240 LGEVGFKDVFRLIHKLLMKHQDRK 263
>gi|316934283|ref|YP_004109265.1| putative portal protein [Rhodopseudomonas palustris DX-1]
gi|315601997|gb|ADU44532.1| putative portal protein [Rhodopseudomonas palustris DX-1]
Length = 673
Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats.
Identities = 86/351 (24%), Positives = 151/351 (43%), Gaps = 24/351 (6%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
+ DVEV D + R + V+ V P+EF S +
Sbjct: 163 ITSQEDVEV---DLELDEATGTYSGSWTRVTDTSGLRVEVVPPEEFYSDA-SKKRRQDGT 218
Query: 70 VGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSD--------KALEMI 121
GRK TR++LIS GY R+ ++ + + S ++ + + +D L+ I
Sbjct: 219 RGRKTLKTRAELISEGYPRDKVSKVRVSSEIEFDSERQERDRETNDGIGSDAPQSELDQI 278
Query: 122 EYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGES 181
+E ++ + GDG A L R++ A G ++ E + F +R PH G +
Sbjct: 279 LVHETFIQLSLKGDGKASLYRIVHADG----HLFEMGEVADDNFLDFVPLRRPHSQFGNN 334
Query: 182 LAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMD 241
+ I+ Q +TV+ R LD+ N P+ V S+ +P+ +L+ + + V
Sbjct: 335 FSKRIVPTQNARTVITRSILDHAATVNNPRWTVLNNSLSNPKELLDARLRGVVNVK---- 390
Query: 242 IRSVLGIHSVPMIEKS-FSMLHYLDQELVDRTGISDISSGFSPEIL--QNMTATATSLIE 298
R +GI P + + F +L L + TGIS +S G + + + QN LI
Sbjct: 391 NRDAIGILPYPQLNNAVFPLLEMLKTNKEETTGISSLSQGLNKDAISSQNSQGMVNDLIT 450
Query: 299 QSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
S Q ++I R A L LF +++I++Q + ++ + + + DPR
Sbjct: 451 VSQTRQ-KIIARNFAMFLHDLFLAARKVVIENQTRKKVWEFDNNFQNIDPR 500
>gi|241760934|ref|ZP_04759023.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374553|gb|EER64014.1| hypothetical protein ZmobDRAFT_0099 [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 729
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)
Query: 9 MLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSP 68
+L++ D ++ + D G +++ + R Q + + +E+ + + + +
Sbjct: 171 LLMEAEDNPDIQITLNSDNGSGQYEVTVTRYQLQKRYVDMPIPSEEYRVSARTRHEDDAD 230
Query: 69 IVGRKLYLTRSDLISMGYDRESINNLPII-----SSQNIENTWKFPK--NQYSDKALEMI 121
Y T SDLISMG+DR+ + +LP S + W+ + SD+A +
Sbjct: 231 YQAHVSYKTLSDLISMGFDRDIVESLPSDKSFPNSDGRSDARWRDESFLSGSSDQANREV 290
Query: 122 EYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGES 181
YE YV ID DGDGIAEL ++ KD +L EE +E PF H IG S
Sbjct: 291 LLYEEYVRIDRDGDGIAELLQIFRV----KDVLLSIEEVDEAPFVVWTPFPRAHRMIGNS 346
Query: 182 LAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMD 241
LA +++IQ++K+VL+RQ LD +Y N P+ V + + + F + + G
Sbjct: 347 LAEKVMDIQRVKSVLMRQALDGVYQTNAPRMAV------NVDGLTEDTFDDLLTIRPGAI 400
Query: 242 IRSVLGIHSVPM-----IEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSL 296
+R GI P+ I+KS M+ Y+ RTGI+ ++ G + L N TAT +L
Sbjct: 401 VRYRGGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSL-NKTATGQAL 459
Query: 297 IEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
++ G E + R AQ L LF+ L L+I D +++ + + DP
Sbjct: 460 LQAQGQQMEEYVARNFAQSLGRLFQKKLWLMIASGD-PMAIKVEGLYKTVDP 510
>gi|260753098|ref|YP_003225991.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258552461|gb|ACV75407.1| hypothetical protein Za10_0861 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 729
Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)
Query: 9 MLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSP 68
+L++ D ++ + D G +++ + R Q + + +E+ + + + +
Sbjct: 171 LLMEAEDNPDIQITLNNDDGSGQYEVTVTRYQLQKRYVDMPIPSEEYRVSARTRHEDDAD 230
Query: 69 IVGRKLYLTRSDLISMGYDRESINNLPII-----SSQNIENTWKFPK--NQYSDKALEMI 121
Y T SDLISMG+DR+ + +LP S + W+ + SD+A +
Sbjct: 231 YQAHVSYKTLSDLISMGFDRDIVESLPSDKSFPNSDGRSDARWRDESFLSGSSDQANREV 290
Query: 122 EYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGES 181
YE YV ID DGDGIAEL ++ KD +L EE +E PF H IG S
Sbjct: 291 LLYEEYVRIDRDGDGIAELLQIFRV----KDVLLSIEEVDEAPFVVWTPFPRAHRMIGNS 346
Query: 182 LAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMD 241
LA +++IQ++K+VL+RQ LD +Y N P+ V + + + F + + G
Sbjct: 347 LAEKVMDIQRVKSVLMRQALDGVYQTNAPRMAV------NVDGLTEDTFDDLLTIRPGAI 400
Query: 242 IRSVLGIHSVPM-----IEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSL 296
+R GI P+ I+KS M+ Y+ RTGI+ ++ G + L N TAT +L
Sbjct: 401 VRYRGGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSL-NKTATGQAL 459
Query: 297 IEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
++ G E + R AQ L LF+ L L+I D +++ + + DP
Sbjct: 460 LQAQGQQMEEYVARNFAQSLGRLFQKKLWLMIASGD-PMAIKVEGLYKTVDP 510
>gi|56551276|ref|YP_162115.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542850|gb|AAV89004.1| hypothetical protein ZMO0380 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 729
Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)
Query: 9 MLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSP 68
+L++ D ++ + D G +++ + R Q + + +E+ + + + +
Sbjct: 171 LLMEAEDNPDIQITLNNDDGSGQYEVTVTRYQLQKRYVDMPIPSEEYRVSARTRHEDDAD 230
Query: 69 IVGRKLYLTRSDLISMGYDRESINNLPII-----SSQNIENTWKFPK--NQYSDKALEMI 121
Y T SDLISMG+DR+ + +LP S + W+ + SD+A +
Sbjct: 231 YQAHVSYKTLSDLISMGFDRDIVESLPSDKSFPNSDGRSDARWRDESFLSGSSDQANREV 290
Query: 122 EYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGES 181
YE YV ID DGDGIAEL ++ KD +L EE +E PF H IG S
Sbjct: 291 LLYEEYVRIDRDGDGIAELLQIFRV----KDVLLSIEEVDEAPFVVWTPFPRAHRMIGNS 346
Query: 182 LAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMD 241
LA +++IQ++K+VL+RQ LD +Y N P+ V + + + F + + G
Sbjct: 347 LAEKVMDIQRVKSVLMRQALDGVYQTNAPRMAV------NVDGLTEDTFDDLLTIRPGAI 400
Query: 242 IRSVLGIHSVPM-----IEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSL 296
+R GI P+ I+KS M+ Y+ RTGI+ ++ G + L N TAT +L
Sbjct: 401 VRYRGGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSL-NKTATGQAL 459
Query: 297 IEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
++ G E + R AQ L LF+ L L+I D +++ + + DP
Sbjct: 460 LQAQGQQMEEYVARNFAQSLGRLFQKKLWLMIASGD-PMAIKVEGLYKTVDP 510
>gi|167583563|ref|YP_001671753.1| portal protein [Enterobacteria phage phiEco32]
gi|164375401|gb|ABY52809.1| portal protein [Enterobacteria phage phiEco32]
Length = 747
Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 154/343 (44%), Gaps = 24/343 (6%)
Query: 24 REDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLIS 83
E+ + D+++ + + +V V+ V ++ + + + ++ ++ DL++
Sbjct: 177 TEENEDGTVDVKVTYEQTVKRVKVEYVPSEQIFVDEHATSFADAQYFCHRVRRSKEDLVA 236
Query: 84 MGYDRESIN--NLPIISSQNIENTWKFPKNQY-----------SDKALEMIEYYELYVT- 129
MG+ ++ I N + ++T + + + ++ M+ YE Y+
Sbjct: 237 MGFPKDEIEAFNDWTDTMDTTQSTVAWSRTDWRQDIDADIGTDTEDIASMVWVYEHYIRT 296
Query: 130 IDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEI 189
D + ++L +VI AG ++IL EE +PF P F G+S+ +I
Sbjct: 297 GVLDKNKESKLYQVIQAG----EHILHTEEVTHIPFVTFCPYPIPGSFYGQSVYDITKDI 352
Query: 190 QKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIH 249
Q ++T L+R +DN+ N + G+ D S+L+ + G + + D + H
Sbjct: 353 QDLRTALVRGYIDNVNNANYGRYKALVGA-YDRRSLLDNRPGGVVEMER-QDAIDLFPYH 410
Query: 250 SVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATAT-SLIEQSGVGQVELI 308
++P + +L ++ RTG++ + G +P++ +N A AT L+ + ++ ++
Sbjct: 411 NLP--QGIDGLLGMSEELKETRTGVTKLGMGINPDVFKNDNAYATVGLMMNAAQNRLRMV 468
Query: 309 VRTLAQ-GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
R +A G+ L RG+ LI ++ + V+ V +P+
Sbjct: 469 CRNIAHNGMVELMRGIYSLIRENGEVPIEVQTPRGMVQVNPKQ 511
>gi|307308935|ref|ZP_07588618.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
BL225C]
gi|306900569|gb|EFN31182.1| hypothetical protein SinmeBDRAFT_4502 [Sinorhizobium meliloti
BL225C]
Length = 677
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 156/366 (42%), Gaps = 32/366 (8%)
Query: 9 MLIKDSDVEVLEHSHRED----------------GGEKVHDLRIRRKYSQGKVCVDAVSP 52
++ DV++++ S +++ GG +V D++IR + + V V P
Sbjct: 150 LIKGIPDVQLVQFSEQQEAGQIIIEESGEPYTIPGGVQVRDVKIRTVTRRSCINVFPVDP 209
Query: 53 DEFLIHPDS-VDIE----KSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWK 107
++ ++ D+ D E ++ + G + ++RS LI +G+D+ +++ +P ++ + +
Sbjct: 210 EDAVLSTDAQFDPETGGIRAKLQGHRKIMSRSVLIDLGFDKATVDRIPGVNEKTDGIALE 269
Query: 108 FPKNQYSDKALE--MIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNEL-P 164
K+ ++A + M+E Y +Y + D + R+ G + +L EE P
Sbjct: 270 RLKDVSGERAFDKDMVEVYTVYTRLKL--DTTSRHYRITFGGDSANPILLDYEETTRFYP 327
Query: 165 FTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPES 224
+ G+ +A I E + + + R D+L P T+ + + +
Sbjct: 328 YAAFVPYPLAGTLFGQGIADRIGEDHEKISKMERAVQDSLNMSVFPITV-VDDDVSSIDD 386
Query: 225 VLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPE 284
+ N GK IR ++ + + ++ ++ L+Q+L TG+
Sbjct: 387 LTNLHPGKVIRSSSPNGGINFVQHPFTG--AQATGIIERLEQKLDFSTGVGPQMMTLDAS 444
Query: 285 ILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQHQDKVRMV--RLRD 341
LQ TATA + +E + R A+ G L + ++ L++Q D+ + + RL
Sbjct: 445 DLQRTTATAINQRSNQQQTLIETVSRFFAETGYRYLTKVIVDLLVQKPDESQELIGRLTG 504
Query: 342 QWVSFD 347
++ D
Sbjct: 505 NFIPVD 510
>gi|227822445|ref|YP_002826417.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
gi|227341446|gb|ACP25664.1| hypothetical protein NGR_c19000 [Sinorhizobium fredii NGR234]
Length = 361
Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 119/189 (62%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
Query: 163 LPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDP 222
+PF L R PH G S+ + EIQ++KTVL+RQTLDNLYWQN Q IVQEG+I +P
Sbjct: 1 MPFADLIIERRPHQREGGSVTDDMAEIQRVKTVLMRQTLDNLYWQNNQQPIVQEGAIANP 60
Query: 223 ESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEK-SFSMLHYLDQELVDRTGISDISSGF 281
ESVLNP+FG+PIRV+ G+D R+ LG VP + K SF+ML YLDQE DRTGISD SSG
Sbjct: 61 ESVLNPKFGQPIRVSQGIDARAALGYTMVPFVAKESFAMLSYLDQEATDRTGISDASSGL 120
Query: 282 SPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRD 341
+P+ L NMTA AT+LIEQ+G+GQ EL+VRT AQGL +F+GLLRL+I+HQD+ R VRLR
Sbjct: 121 APDALTNMTARATALIEQAGIGQTELMVRTFAQGLRRVFKGLLRLVIKHQDRPRAVRLRG 180
Query: 342 QWVSFDPRY 350
QWV+FDPR+
Sbjct: 181 QWVTFDPRH 189
>gi|227821703|ref|YP_002825673.1| hypothetical protein NGR_c11350 [Sinorhizobium fredii NGR234]
gi|227340702|gb|ACP24920.1| hypothetical protein NGR_c11350 [Sinorhizobium fredii NGR234]
Length = 348
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 15/165 (9%)
Query: 10 LIKDSDVEVLEH-SHRE--DGGEK-----VHDLRIRRKYSQGKVCVDAVSPDEFLIHPDS 61
L+ D DVEVLE S++E D + ++++RIRR G + AV +EFLIHPD+
Sbjct: 156 LVADDDVEVLEQESYQEQIDTPQGPQSVTLYNVRIRRTKEYGCTKLAAVPLEEFLIHPDA 215
Query: 62 VDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENT-----WKFPKNQYSD- 115
+ I+ SPI G K L RSDL++MGYDRE ++ SS N E T + P ++ +
Sbjct: 216 MSIDDSPITGIKTRLRRSDLVAMGYDREKVDKFATASSSNEEETEEFARRREPFDEKDEI 275
Query: 116 -KALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEE 159
KAL+ ++YYELYV ID D DGIAELRR+ AGG + N+L +EE
Sbjct: 276 IKALQEVDYYELYVKIDVDDDGIAELRRMCFAGGLAEVNLLDDEE 320
>gi|282598927|ref|YP_003358477.1| N4 gp59-like protein [Pseudomonas phage LIT1]
gi|259048687|emb|CAZ66336.1| N4 gp59-like protein [Pseudomonas phage LIT1]
Length = 726
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/318 (19%), Positives = 125/318 (39%), Gaps = 20/318 (6%)
Query: 43 GKVCVDAVSPDEFLIHPDS-VDIEKSPIVGRKLYLTRSDLISMG----YDRESINNLPII 97
V + +I P D K+ + + ++L + G D+ + ++
Sbjct: 238 NHPTVQVCDYNNIVIDPSCGSDFSKAKFLIETFESSYAELKADGRYQNLDKIQVEGQNLL 297
Query: 98 SS-QNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILC 156
S + + DK+ + + +E + D GDG+ L ++ +
Sbjct: 298 SEPDYTGPSEGVRNFDFQDKSRKRLVVHEYWGYYDIHGDGV--LHPIVATWVGAVMIRME 355
Query: 157 NEEW--NELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIV 214
+ +P+ + + GES A +I+ Q+I + R +D + Q V
Sbjct: 356 ENPFPDKRIPYVVVNYIPRKRDLYGESDGALLIDNQRIIGAVTRGMIDTMARSANGQVGV 415
Query: 215 QEGSIIDPESVLNPQ---FGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQ-ELVD 270
+G++ V N + G+ G D R+ + +H+ P I +S + L Q E
Sbjct: 416 MKGAL----DVTNRRRFDRGENYEFNPGADPRAAVHMHTFPEIPQSAQYMINLQQAEAES 471
Query: 271 RTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQH 330
TG+ ++G S L TATA + + I+R L+ G+ + R ++ + +
Sbjct: 472 MTGVKAFNAGISGAALG-DTATAVRGALDAASKRELGILRRLSAGIIEIGRKIIAMNAEF 530
Query: 331 QDKVRMVRLRDQ-WVSFD 347
D V +VR+ ++ +V
Sbjct: 531 LDDVEVVRITNEHFVDIR 548
>gi|221271428|dbj|BAH15181.1| portal protein [Serratia phage KSP100]
Length = 374
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 197 LRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEK 256
+R +DN+ N + +G D S+L+ + G + A I V P+
Sbjct: 1 VRGYIDNIMSANYGRFRAVKGQ-YDKRSLLDNRPGGVVEENA---IGMVDLFPHHPLPAG 56
Query: 257 SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATAT-SLIEQSGVGQVELIVRTLAQ- 314
S+L ++Q RTG++ I G SPE+ +N + AT ++ + ++ ++ R +AQ
Sbjct: 57 VDSILEQIEQAKERRTGVTRIGMGLSPEVFKNDNSFATVDMMMSAAQNRMRMVARNVAQN 116
Query: 315 GLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ LF + RL+ ++++ + + P
Sbjct: 117 FMTQLFLAIYRLLKENENSTLPIEVNGAMKEVMP 150
>gi|326562389|gb|EGE12709.1| putative portal protein [Moraxella catarrhalis 103P14B1]
Length = 806
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 23/318 (7%)
Query: 43 GKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
K VD + I P + E + V + S+L G NL + Q+
Sbjct: 292 NKPTVDICNLKNVFIDPTCKGNFENAQFVVHAYESSLSELKKQG----IYQNLGYLMEQH 347
Query: 102 I--ENTWKFPKNQ---YSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILC 156
+N+ P + + D A + YE + D +G E ++ A D I+
Sbjct: 348 AQADNSIDKPSDDVFKFQDNARRKLTVYEYWGYWDIHDNG--ETTAIVCA--WVGDTIIR 403
Query: 157 NEE----WNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQT 212
EE +LPF + G A + + Q+I + R +D L QT
Sbjct: 404 MEENPFPKGKLPFVVFNYLPEEESIWGIPNAELLGDNQEILGAVTRGMIDLLGKSANSQT 463
Query: 213 IVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS-FSMLHYLDQELVDR 271
+ + V G+ G D R + H+ P I S M+H ++ E
Sbjct: 464 AFPKNFLDSANKVKYST-GQDYEYNQGFDPRVHVHTHTFPEIPNSAMMMVHSMNNEAESL 522
Query: 272 TGISDI-SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQH 330
+G+ S G S L +ATA + + + I+R +++G + R ++ + +
Sbjct: 523 SGVKAFSSQGISASHLG-DSATAARGVLDAVSKREMSILRRISEGFIQMGRFIMAMNSEF 581
Query: 331 QDKVRMVRLRDQ-WVSFD 347
+ +VR+ ++ +V+
Sbjct: 582 LSEKEIVRITNKEFVTIR 599
>gi|326567485|gb|EGE17600.1| putative portal protein [Moraxella catarrhalis BC1]
Length = 806
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 66/318 (20%), Positives = 119/318 (37%), Gaps = 23/318 (7%)
Query: 43 GKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
K VD + I P + E + V + S+L G NL + Q
Sbjct: 292 NKPTVDICNLKNVFIDPTCRGNFENAQFVVHAYESSLSELKKQG----IYQNLGYLMEQQ 347
Query: 102 --IENTWKFPKNQ---YSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILC 156
+N+ P + + D A + YE + D +G E ++ A D I+
Sbjct: 348 SQADNSIDKPSDDVFKFQDNARRKLTVYEYWGYWDIHDNG--ETTAIVCA--WVGDTIIR 403
Query: 157 NEE----WNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQT 212
EE +LPF + G A + + Q+I + R +D L QT
Sbjct: 404 MEENPFPKGKLPFVVFNYLPEEESIWGIPNAELLGDNQEILGAVTRGMIDLLGKSANSQT 463
Query: 213 IVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS-FSMLHYLDQELVDR 271
+ + V G+ G D R + H+ P I S M+H ++ E
Sbjct: 464 AFPKNFLDSANKVKYST-GQDYEYNQGFDPRVHVHTHTFPEIPNSAMMMVHSMNNEAESL 522
Query: 272 TGISDI-SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQH 330
+G+ S G S L +ATA + + + I+R +++G + R ++ + +
Sbjct: 523 SGVKAFSSQGISASHLG-DSATAARGVLDAVSKREMSILRRISEGFIQMGRFIMAMNSEF 581
Query: 331 QDKVRMVRLRDQ-WVSFD 347
+ +VR+ ++ +V+
Sbjct: 582 LSEKEIVRITNKEFVTIR 599
>gi|326573143|gb|EGE23112.1| putative portal protein [Moraxella catarrhalis CO72]
Length = 806
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 66/318 (20%), Positives = 119/318 (37%), Gaps = 23/318 (7%)
Query: 43 GKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
K VD + I P + E + V + S+L G NL + Q
Sbjct: 292 NKPTVDICNLKNVFIDPTCRGNFENAQFVVHAYESSLSELKKQG----IYQNLGYLMEQQ 347
Query: 102 --IENTWKFPKNQ---YSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILC 156
+N+ P + + D A + YE + D +G E ++ A D I+
Sbjct: 348 SQADNSIDKPSDDVFKFQDNARRKLTVYEYWGYWDIHDNG--ETTAIVCA--WVGDTIIR 403
Query: 157 NEE----WNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQT 212
EE +LPF + G A + + Q+I + R +D L QT
Sbjct: 404 MEENPFPKGKLPFVVFNYLPEEESIWGIPNAELLGDNQEILGAVTRGMIDLLGKSANSQT 463
Query: 213 IVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS-FSMLHYLDQELVDR 271
+ + V G+ G D R + H+ P I S M+H ++ E
Sbjct: 464 AFPKNFLDSANKVKYST-GQDYEYNQGFDPRVHVHTHTFPEIPNSAMMMVHSMNNEAESL 522
Query: 272 TGISDI-SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQH 330
+G+ S G S L +ATA + + + I+R +++G + R ++ + +
Sbjct: 523 SGVKAFSSQGISASHLG-DSATAARGVLDAVSKREMSILRRISEGFIQMGRFIMAMNSEF 581
Query: 331 QDKVRMVRLRDQ-WVSFD 347
+ +VR+ ++ +V+
Sbjct: 582 LSEKEIVRITNKEFVTIR 599
>gi|319956914|ref|YP_004168177.1| hypothetical protein Nitsa_1175 [Nitratifractor salsuginis DSM
16511]
gi|319419318|gb|ADV46428.1| hypothetical protein Nitsa_1175 [Nitratifractor salsuginis DSM
16511]
Length = 561
Score = 89.4 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 54/305 (17%), Positives = 111/305 (36%), Gaps = 35/305 (11%)
Query: 43 GKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNI 102
G++ ++ V + P++ ++ ++ T +L + N S
Sbjct: 137 GQLRIERVKLKNMYLDPNASNVFDIQYCVHRVTTTIGNLRQQFGRKFKWKNYIGDSEDGT 196
Query: 103 ENTWKFPKNQYSDKALEMIEYYEL---YVTIDYDGDGIAELRRVIMAGGTGKDNILCNEE 159
S + + Y+ YV+ GD L +E
Sbjct: 197 SYLSSADLGDASRIEVRDVYRYQSGKWYVSTVLPGDAFVRL----------------DEP 240
Query: 160 W-NELPFTCLRAMRAPHCF--------IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQP 210
+ LPF G S +I +Q+ TV Q +D +
Sbjct: 241 LKDGLPFIIGSVEPQFVRLDESNAVEAYGGSFIEPMIPLQEEYTVTRNQQIDAIAESLSK 300
Query: 211 QTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVD 270
+ + + S ++ + +L+ + I V++ +++ + P I+ S + LD E+ +
Sbjct: 301 RFLATKTSGLNEKDLLSNRTK--ISVSSLNEVKELQA----PRIDPSIFGIDRLDSEMQE 354
Query: 271 RTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQ 329
+GI+ + G + N TAT S++ + G + IVR L + E R ++RLI +
Sbjct: 355 VSGITKYNQGLNDPHNLNQTATGVSILTEEGNAVIADIVRALNESFFEPAIRRMVRLIYK 414
Query: 330 HQDKV 334
+ +
Sbjct: 415 YGESP 419
>gi|307545235|ref|YP_003897714.1| Haemophilus-specific protein, uncharacterized [Halomonas elongata
DSM 2581]
gi|307217259|emb|CBV42529.1| Haemophilus-specific protein, uncharacterized [Halomonas elongata
DSM 2581]
Length = 749
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 104/319 (32%), Gaps = 30/319 (9%)
Query: 44 KVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISM----GYDRESINNLPIISS 99
+ + VSP + PD+ I+ + + TRS L + Y ++I +
Sbjct: 240 RPEFERVSPFDMYPSPDATSIDDGAFIIERARFTRSQLNQLIGVPSYSEDAIRQVLHQYG 299
Query: 100 QNIENTWKFPKNQYSDKALEM---------------------IEYYELYVTIDYDGDGIA 138
Q W + + ++ + + ++ D D +A
Sbjct: 300 QGGLRDWLWSDGERAELEGRGHEWLTPGETIDGLIYSGGAQGVTLLQWGISPDEIEDPLA 359
Query: 139 ELR-RVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLL 197
E I+ G + + P+ P F G+ + + ++Q +
Sbjct: 360 EYEVEAILIGQHVIRVRINRDPLERRPYHKSSFQPVPGSFWGQGIPELMADVQDVCNATA 419
Query: 198 RQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM---DIRSVLGIHSVPMI 254
R ++NL + PQ V E + E + K R A + + ++
Sbjct: 420 RGLVNNLAISSGPQVEVYEDRLQPQEDPTDIYPWKIWRTKASIETGNNPALRFFQPQSNA 479
Query: 255 EKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ 314
+ ++ + + T I G TA+ S++ +S ++ +R + +
Sbjct: 480 SELLAVYEQFEYRADESTNIPRYMYGSDEAGGAGQTASGLSMLMESANKGIKDAIRHIDR 539
Query: 315 GL-EILFRGLLRLIIQHQD 332
G+ + L +Q D
Sbjct: 540 GVLRRVIEALWLHNMQFSD 558
>gi|308516960|emb|CBW47065.1| structural protein, N4 gp59-like [Roseovarius sp. 217 phage 1]
Length = 801
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 59/331 (17%), Positives = 119/331 (35%), Gaps = 24/331 (7%)
Query: 35 RIRRKYSQGKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISM--------- 84
+ + + V V+ + P D E+S + T+S+L++
Sbjct: 253 TVEERMVKNCPSVRIVNIANLFVDPSCEGDWEQSQYMVYTYEATKSELMAKKGTYQNLEN 312
Query: 85 -GYDRESINNL---PIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL 140
++ I + P S N + +DK + + YE + D +GI
Sbjct: 313 VNWESAKIQSNAGNPDHESNTPNNDMRTSGTGATDK--QKVLVYEYWGLYDIYDNGIMVP 370
Query: 141 RRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200
V G T + PF + M GE+ A+ + + Q+I + R
Sbjct: 371 IVVTWVGETIIEMRENPFPDKRPPFVIVPYMPILKSVFGEADASLLQDNQRIIGAVTRGV 430
Query: 201 LDNLYWQNQPQTIVQEGSI--IDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS- 257
+D + QT +G + ++ +N G+ D ++ + P I +S
Sbjct: 431 IDLMGRSANAQTGYAKGFLDPVNKRRFVN---GEDFEFNPNGDPKANIRQMEYPEIPRSA 487
Query: 258 FSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLE 317
+ + E TG+ S G S + AT S + I+R LA+G++
Sbjct: 488 HETIQMQNAEAEALTGVKSFSGGISGDAYG-SVATGIRGALDSAATREMSILRRLAKGMQ 546
Query: 318 ILFRGLLRLIIQHQDKVRMVRLRD-QWVSFD 347
+ ++ + + + +VR+ + ++V
Sbjct: 547 AIGTKMIAMNAKFLSEKEIVRVTNEEFVEVS 577
>gi|282599474|ref|YP_003358364.1| N4 gp59-like protein [Pseudomonas phage LUZ7]
gi|259048573|emb|CAZ66223.1| N4 gp59-like protein [Pseudomonas phage LUZ7]
Length = 720
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 59/338 (17%), Positives = 130/338 (38%), Gaps = 29/338 (8%)
Query: 27 GGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISMG 85
++++ K + + +I P D+ K+ V + ++L + G
Sbjct: 217 VPNGSEKVKVQ-KTIVNQPTLKVCDFRNIVIDPSCNGDMNKAKFVVESFESSYAELKADG 275
Query: 86 YDRESINNLPIISSQNIENTWKFPKN---------QYSDKALEMIEYYELYVTIDYDGDG 136
+NL I+ QN + + ++D++ + + +E + D GDG
Sbjct: 276 ----RYSNLEKINEQNSDILSQPDYATGSESVRNFDFADRSRKRLVVHEYWGYYDIHGDG 331
Query: 137 IAELRRVIMAGGTGKDNILCNEEW--NELPFTCLRAMRAPHCFIGESLAASIIEIQKIKT 194
EL ++ L + ++P+ + G+S + +I+ QKI
Sbjct: 332 --ELHSIVATWVGQVLIRLELNPFPDGKIPYVVAAYLPVKDSVYGDSDGSLLIDNQKIVG 389
Query: 195 VLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQ---FGKPIRVAAGMDIRSVLGIHSV 251
+ R +D + Q Q+G++ + N + G+ G + + + H+
Sbjct: 390 AISRGMIDIMAQSANGQVGFQKGAL----DITNRRRYERGETYEFNPGNNPATAIYTHTF 445
Query: 252 PMIEKSFS-MLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVR 310
I +S ML+ E TG+ ++G S + L TAT + + I+R
Sbjct: 446 QEIPRSAEYMLNQQQLEAESMTGVKAFNTGISGQALG-DTATGIRGALDAASKRELGILR 504
Query: 311 TLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ-WVSFD 347
L+ L + R ++ + + D ++R+ ++ +V+
Sbjct: 505 RLSDCLIEVGRRVIAMNAEFLDDEEVIRITNEGFVTVR 542
>gi|316995429|gb|ADU79210.1| hypothetical protein EcP1_gp59 [Enterobacter phage EcP1]
Length = 719
Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 59/316 (18%), Positives = 120/316 (37%), Gaps = 24/316 (7%)
Query: 42 QGKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISMG-YD-------RESIN 92
Q + V+ ++ + I P D++K+ V + + ++L G Y ++S
Sbjct: 230 QNQPYVEVLNIENVYIDPSCQGDMDKATFVIHRFETSIAELKKSGNYKNLDKLTVKDSDE 289
Query: 93 NLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKD 152
+P IS I+ + N K+ + E + D D G+ L +++A G
Sbjct: 290 LIPSISDDEIKTSTPTDYNISG-KSRKRFNVTEYWGYYDIDDSGV--LTPIVVA-YVGDV 345
Query: 153 NILCNE---EWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQ 209
I C+E + PF + + GE A I + Q I R +D +
Sbjct: 346 KIRCSENPYPHGKPPFVVIPYLPMDSSVYGEPDAELIYDNQAIIGASTRAMIDLVARSAN 405
Query: 210 PQTIVQEGSI--IDPESVL--NPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLD 265
Q I+++ ++ + P+ V IR+V +I ++ +
Sbjct: 406 GQNIIRKDVFDPVNYRKFMAGEDAQSNPLNVPLAEAIRTVTTPEVPSIIP---GLIQQQN 462
Query: 266 QELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLR 325
E +G+ S G S L ++ A + + + I+R L +G+ L R ++
Sbjct: 463 NEAESLSGVKAFSEGISSGSLGDVAA-GIRGVLDASSKREMSILRRLKKGMVDLGRMIIA 521
Query: 326 LIIQHQDKVRMVRLRD 341
+ + ++R+ +
Sbjct: 522 MNQEFLTDEEIIRITN 537
>gi|237651526|ref|YP_002898997.1| putative portal protein [Roseophage EE36P1]
gi|220898158|gb|ACL81415.1| N4 gp59 protein [Sulfitobacter phage EE36phi1]
Length = 800
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 119/331 (35%), Gaps = 24/331 (7%)
Query: 35 RIRRKYSQGKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISM--------- 84
I + + V ++ + P + EK+ + T S+L +
Sbjct: 253 TIEERMVKNCPSVRIINVANLFVDPSCEGEWEKAQYMIYTYEATPSELKAKKDYYQNLDQ 312
Query: 85 -GYDRESINNL---PIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL 140
++ I + P S+ N + +DK + + YE + D +G+
Sbjct: 313 VNWESAKIQSNHGNPDHESKTPNNDMRTSGTGSADK--QKVLVYEYWGLYDIYNNGVMVP 370
Query: 141 RRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200
V G T + PF + M GE+ A+ + + Q+I + R
Sbjct: 371 IVVTWVGETIIEMRENPFPDKRPPFVIVPYMPILKSVFGEADASLLQDNQRIIGAVTRGV 430
Query: 201 LDNLYWQNQPQTIVQEGSI--IDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS- 257
+D + QT +G + ++ N G+ D ++ + P I +S
Sbjct: 431 IDLMGRSANAQTGYAKGFLDPVNKRRFTN---GEDFEFNPNGDPKANIRQMEYPEIPRSA 487
Query: 258 FSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLE 317
+ + + E TG+ S G + + + AT S + I+R LA+G++
Sbjct: 488 HETIQWQNAEAEALTGVKSFSGGITGDAYGRV-ATGIRGALDSAAQREMSILRRLAKGIQ 546
Query: 318 ILFRGLLRLIIQHQDKVRMVRLRDQ-WVSFD 347
+ ++ + + + ++R+ ++ +V
Sbjct: 547 DIGMKMIAMNGKFLSEKEIIRVTNREFVEVS 577
>gi|237651609|ref|YP_002899079.1| putative portal protein [Roseophage DSS3P2]
gi|220898079|gb|ACL81337.1| N4 94kDa-like protein [Silicibacter phage DSS3phi2]
Length = 800
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 57/329 (17%), Positives = 118/329 (35%), Gaps = 20/329 (6%)
Query: 35 RIRRKYSQGKVCVDAVSPDEFLIHPDSV-DIEKSPIVGRKLYLTRSDLISM--------- 84
I + + V ++ + P + EK+ + T S+L +
Sbjct: 253 TIEERMVKNCPSVRIINVANLFVDPSCEGEWEKAQYMIYTYEATPSELKAKKNYYQNLDK 312
Query: 85 -GYDRESINNL---PIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL 140
++ I + P S N + +DK + + YE + D +G+
Sbjct: 313 VNWESAKIQSNHGNPDHESNTPNNDMRTSGTGSADK--QKVLVYEYWGLYDIYANGVMVP 370
Query: 141 RRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200
V G T + PF + M GE+ A+ + + Q+I + R
Sbjct: 371 IVVTWVGETIIEMRENPFPDKRPPFVIVPYMPILKSVFGEADASLLQDNQRIIGAVTRGV 430
Query: 201 LDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS-FS 259
+D + QT +G + DP + G+ D ++ + P I +S
Sbjct: 431 IDLMGRSANAQTGYAKGFL-DPVNKRRFTQGEDFEFNPNGDPKANIRQMEYPEIPRSAHE 489
Query: 260 MLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEIL 319
+ + + E TG+ S G S + + AT S + I+R LA+G++ +
Sbjct: 490 TIQWQNAEAEALTGVKSFSGGISGDAYGRV-ATGIRGALDSASQREMSILRRLAKGIQDI 548
Query: 320 FRGLLRLIIQHQDKVRMVRLRDQ-WVSFD 347
++ + + + ++R+ ++ +V
Sbjct: 549 GMKMISMNGKFLSEKEIIRVTNREFVEVS 577
>gi|228905598|ref|ZP_04069542.1| hypothetical protein bthur0014_66580 [Bacillus thuringiensis IBL
4222]
gi|228854038|gb|EEM98752.1| hypothetical protein bthur0014_66580 [Bacillus thuringiensis IBL
4222]
Length = 707
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/305 (19%), Positives = 116/305 (38%), Gaps = 15/305 (4%)
Query: 39 KYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIIS 98
K G++ P I P + E+ + + D I Y ++ + +
Sbjct: 174 KLYTGEIRCRICDPLTVYIDPAAEMDEEIRWIVERKPRDI-DYIQERYGKDVAADENVGF 232
Query: 99 SQNIENTWKFPKNQYSDKALEMIEYYELYVT-IDYDGDGIAELRRVIMAGGTGKDNILCN 157
+ + T + N S K M E++V +G+ +V +AGG D +
Sbjct: 233 AAAFDVTPQNGFNSTSKKRPNMAMVDEMWVKPCGKHPNGL----KVTIAGGQLLDI---D 285
Query: 158 EEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEG 217
E ++PF + P E+ ++ IQ+ ++ + +V G
Sbjct: 286 ENAGDIPFFIFGDIPIPGSVKAEAFIKDMLPIQREINIMRSMFATHARKMGNSMWLVPMG 345
Query: 218 SIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFS-MLHYLDQELVDRTGISD 276
S +D + + N + G + R P I + +L+ D ++ D +G +
Sbjct: 346 SSVDEDEITNEE-GGIVHYTPIEGARPER--VGAPDIPSFYDRILNNHDADIDDLSGARE 402
Query: 277 ISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRM 336
IS G P L T + SL+ + ++ + + G++ L + +L L+ +H + RM
Sbjct: 403 ISQGRLPSGL--DTYSGLSLMVEQENEKLAVSSQNYEHGMKRLLQRVLMLMKKHYTEERM 460
Query: 337 VRLRD 341
R+
Sbjct: 461 ARILG 465
>gi|75761880|ref|ZP_00741807.1| Phage protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228905318|ref|ZP_04069295.1| hypothetical protein bthur0014_63940 [Bacillus thuringiensis IBL
4222]
gi|228937950|ref|ZP_04100577.1| hypothetical protein bthur0008_6260 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970830|ref|ZP_04131470.1| hypothetical protein bthur0003_6170 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977404|ref|ZP_04137799.1| hypothetical protein bthur0002_6190 [Bacillus thuringiensis Bt407]
gi|74490640|gb|EAO53929.1| Phage protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228782381|gb|EEM30564.1| hypothetical protein bthur0002_6190 [Bacillus thuringiensis Bt407]
gi|228788955|gb|EEM36894.1| hypothetical protein bthur0003_6170 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821741|gb|EEM67742.1| hypothetical protein bthur0008_6260 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228854317|gb|EEM98998.1| hypothetical protein bthur0014_63940 [Bacillus thuringiensis IBL
4222]
gi|326938429|gb|AEA14325.1| Phage protein [Bacillus thuringiensis serovar chinensis CT-43]
Length = 707
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 117/305 (38%), Gaps = 15/305 (4%)
Query: 39 KYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIIS 98
+ G++ P I P + E+ + + D I Y ++ + +
Sbjct: 174 RLYTGEIRCRICDPLTVYIDPAAEMDEEIRWIVERKPRDI-DYIKERYGKDVAADENVGF 232
Query: 99 SQNIENTWKFPKNQYSDKALEMIEYYELYVT-IDYDGDGIAELRRVIMAGGTGKDNILCN 157
+ + T + N S K M E++V +G+ +V +AGG D +
Sbjct: 233 AAAFDVTPQNGFNSTSKKRPNMAMVDEMWVKPCGKHPNGL----KVTIAGGQLLDI---D 285
Query: 158 EEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEG 217
E ++PF + P E+ ++ IQ+ ++ + +V G
Sbjct: 286 ENAGDIPFFIFGDIPIPGSVKAEAFIKDMLPIQREINIMRSMFATHARKMGNSMWLVPMG 345
Query: 218 SIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFS-MLHYLDQELVDRTGISD 276
S +D + + N + G + +R P I + +L+ D ++ D +G +
Sbjct: 346 SSVDEDEITNEE-GGIVHYTPIEGVRPER--VGAPDIPSFYDRILNNHDADIDDLSGARE 402
Query: 277 ISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRM 336
IS G P L T + SL+ + ++ + + G++ L + +L L+ +H + RM
Sbjct: 403 ISQGRLPSGL--DTYSGLSLMVEQENEKLAVSSQNYEHGMKRLLQRVLLLMKKHYTEERM 460
Query: 337 VRLRD 341
R+
Sbjct: 461 ARILG 465
>gi|119952228|ref|YP_950537.1| 94 kDa protein [Enterobacteria phage N4]
gi|117650947|gb|ABK54420.1| 94 kDa protein [Enterobacteria phage N4]
Length = 763
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/357 (16%), Positives = 137/357 (38%), Gaps = 41/357 (11%)
Query: 17 EVLEHSHR--EDGGEKVHDLRIRRKYSQ------GKVCVDAVSPDEFLIHPDSV-DIEKS 67
E ++ S R ++ G+ + ++ ++ V+ ++P+ +I P DI K+
Sbjct: 202 EAIKESVRFFDETGQATYAVQTGTTTTEVEVPLANHPTVEMLNPENIIIDPSCQGDINKA 261
Query: 68 PIVGRKLYLTRSDLISM---GYDRESIN---NLPIISSQNIENTWKFPKNQYSDKALEMI 121
++DL+ ++ I+ + P+ + T + Q SD + +
Sbjct: 262 MFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATTTPQE--FQISDPMRKRV 319
Query: 122 EYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW--NELPFTCLRAMRAPHCFIG 179
YE + D +G+G+ L ++ L + +LPF + M G
Sbjct: 320 VAYEYWGFWDIEGNGV--LEPIVATWIGSTLIRLEKNPYPDGKLPFVLIPYMPVKRDMYG 377
Query: 180 ESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAG 239
E A + + Q + ++R +D L Q + +G + LN + R G
Sbjct: 378 EPDAELLGDNQAVLGAVMRGMIDLLGRSANGQRGMPKGML----DALNSR-----RYREG 428
Query: 240 MD---------IRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMT 290
D + ++ + + + +M +QE TG+ + G + E ++
Sbjct: 429 EDYEYNPTQNPAQMIIEHKFPELPQSALTMATLQNQEAESLTGVKAFAGGVTGESYGDVA 488
Query: 291 ATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRD-QWVSF 346
A + + + I+R LA+G+ + ++ + + +VR+ + ++V+
Sbjct: 489 A-GIRGVLDAASKREMAILRRLAKGMSEIGNKIIAMNAVFLAEHEVVRITNEEFVTI 544
>gi|167749268|ref|ZP_02421395.1| hypothetical protein EUBSIR_00219 [Eubacterium siraeum DSM 15702]
gi|167657761|gb|EDS01891.1| hypothetical protein EUBSIR_00219 [Eubacterium siraeum DSM 15702]
Length = 534
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 107/310 (34%), Gaps = 11/310 (3%)
Query: 43 GKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNI 102
G + + P DIE+S + + R L M E P +
Sbjct: 140 GDIAIRNADILNLFWEPGIKDIEESANLFYVTLVDRERLNLMYP--ELCGEEPESVAGGT 197
Query: 103 ENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL-----RRVIMAGGTGKDNILCN 157
N K+ +D + +E + Y +G RVI + +
Sbjct: 198 GNVEKYKTEDKTDDSA-KVEVVDWYYKKTINGRKQLCYCKFCGDRVIYSSEDDESCADGF 256
Query: 158 EEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEG 217
+ + PF G + + Q L + L++ ++ + +++
Sbjct: 257 YKHSRYPFVMDTLFVQEGTPCGFGYIDVMRDAQMYIDKLSQVVLEHTVMMSRKRYFIRQN 316
Query: 218 SIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDI 277
S ++ + + + + VA + + I + P+ + L + EL + +G D
Sbjct: 317 SAVNEAEFADLK-NRFVHVAGNLGEEDIREIKAEPLDSSVMNALSFKIDELKETSGNRDF 375
Query: 278 SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMV 337
S G + A+A + ++++G +++ + + ++ LI Q D R
Sbjct: 376 SQGSVSNGV--TAASAIAALQEAGSKLSRDMIKGTYFAFQQVCYLIIELIRQFYDTPRSF 433
Query: 338 RLRDQWVSFD 347
R+ + +FD
Sbjct: 434 RITGGYDAFD 443
>gi|291529975|emb|CBK95560.1| hypothetical protein EUS_02210 [Eubacterium siraeum 70/3]
Length = 534
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 107/310 (34%), Gaps = 11/310 (3%)
Query: 43 GKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNI 102
G + + P DIE+S + + R L M E + +
Sbjct: 140 GDIAIRNADILNLFWEPGIKDIEESANLFYVTLVDRERLNLMYP--ELCEDDTESVAGGT 197
Query: 103 ENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL-----RRVIMAGGTGKDNILCN 157
EN K+ +D + +E + Y +G RVI + +
Sbjct: 198 ENVEKYKTEDKTDDSA-KVEVIDWYYKKTINGRKQLCYCKFCGDRVIYSSEDDESCADGF 256
Query: 158 EEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEG 217
+ + PF G + + Q L + L + ++ + +++
Sbjct: 257 YKHSRYPFVMDTLFVQEGTPCGFGYIDVMRDAQMYIDKLSQVVLAHTVMMSRKRYFIRQN 316
Query: 218 SIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDI 277
S ++ + + + + VA + + I + P+ + L + EL + +G D
Sbjct: 317 SAVNEAEFADLK-NRFVHVAGNLGEEDIREIKAEPLDSSVMNALSFKIDELKETSGNRDF 375
Query: 278 SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMV 337
S G + A+A + ++++G +++ + + ++ LI Q D R
Sbjct: 376 SQGSVSNGV--TAASAIAALQEAGSKLSRDMIKGTYFAFQQVCYLIIELIRQFYDTPRSF 433
Query: 338 RLRDQWVSFD 347
R+ + +FD
Sbjct: 434 RITGGYDAFD 443
>gi|291556862|emb|CBL33979.1| hypothetical protein ES1_09090 [Eubacterium siraeum V10Sc8a]
Length = 534
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 106/310 (34%), Gaps = 11/310 (3%)
Query: 43 GKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNI 102
G + + P DIE+S + + R L M E P +
Sbjct: 140 GDIAIRNADILNLFWEPGIKDIEESANLFYVTLVDRERLNLMYP--ELCGEEPESVAGGT 197
Query: 103 ENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAEL-----RRVIMAGGTGKDNILCN 157
N K+ +D + +E + Y +G RVI + +
Sbjct: 198 GNVEKYKTEDKTDDSA-KVEVVDWYYKKTINGRKQLCYCKFCGDRVIYSSEDDESCADGF 256
Query: 158 EEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEG 217
+ + PF G + + Q L + L++ ++ + +++
Sbjct: 257 YKHSRYPFVMDTLFVQEGTPCGFGYIDVMRDAQMYIDKLSQVVLEHTVMMSRKRYFIRQN 316
Query: 218 SIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDI 277
S ++ + + + + VA + + I + P+ + L EL + +G D
Sbjct: 317 SAVNEAEFADLK-NRFVHVAGNLGEEDIREIKAEPLDSSVMNALSLKIDELKETSGNRDF 375
Query: 278 SSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMV 337
S G + A+A + ++++G +++ + + ++ LI Q D R
Sbjct: 376 SQGSVSNGV--TAASAIAALQEAGSKLSRDMIKGTYFAFQQVCYLIIELIRQFYDTPRSF 433
Query: 338 RLRDQWVSFD 347
R+ + +FD
Sbjct: 434 RITGGYDAFD 443
>gi|257459274|ref|ZP_05624388.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
gi|257443287|gb|EEV18416.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
Length = 516
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 121/307 (39%), Gaps = 33/307 (10%)
Query: 33 DLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESIN 92
++ +S+ + +D VS + P + + + ++YL+ D++S G
Sbjct: 124 SCAVKVYWSKDRAMIDEVSLQDLYFDPGARGLNDISYLVHRIYLSSEDILSYG------- 176
Query: 93 NLPIISSQNIENTWKFPKNQYSDKALEMIEYYEL-----YVTIDYDGDGIAELRRVIMAG 147
IEN F + ++ E+ E YEL YV+ Y+ EL R ++
Sbjct: 177 ---KRGIFRIENKEAFADKKPYER-FEIYEIYELRGGKWYVSSLYEN----ELLRDLIEL 228
Query: 148 GTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQ 207
G+ I+ LP GE S++ +Q V D + Q
Sbjct: 229 RDGQPFIVGYM----LPQIRCTDEEIYVSAYGEPALMSMLPLQNELNVNRNSITDVIRQQ 284
Query: 208 NQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQE 267
P+ I+ + S+++ + G PI ++ + I + + L ++ E
Sbjct: 285 VAPKIILGKASMVERGEL--ESVGTPIYADQPSAVQVL----PAGDIGGAMAALQVIENE 338
Query: 268 LVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRL 326
+ + +G+S +G ++ TAT S++ G +++ +RT + E +F L L
Sbjct: 339 MSEVSGVSPQQNG--ATTVRKETATMASIMANEGSVRLQGYIRTFNETFFEPIFERLAFL 396
Query: 327 IIQHQDK 333
+ ++ D
Sbjct: 397 VWKYADP 403
>gi|153951607|ref|YP_001398216.1| hypothetical protein JJD26997_1133 [Campylobacter jejuni subsp.
doylei 269.97]
gi|153952365|ref|YP_001397542.1| hypothetical protein JJD26997_0326 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939053|gb|ABS43794.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152939811|gb|ABS44552.1| hypothetical protein JJD26997_0326 [Campylobacter jejuni subsp.
doylei 269.97]
Length = 507
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/302 (17%), Positives = 118/302 (39%), Gaps = 41/302 (13%)
Query: 42 QGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
+G ++ V D P++++ E + ++YLT +++ Y+R+ +
Sbjct: 136 KGMPRIERVGIDSIFFDPNALNSEDVGYIVNEIYLTYNEI----YERQKL---------G 182
Query: 102 IENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW- 160
+ PK + + ++ Y++Y + D ++ L ++++L NE
Sbjct: 183 FYKKLETPKLLDEEDEYKKVKLYDIYERKNDDAWVVSTLF---------ENHLLRNEVIL 233
Query: 161 -NELPFTCLRAMRAPHCF--------IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
+ PF + GE + AS + +Q + +D + P+
Sbjct: 234 QDGQPFVWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDEINITRNLLIDAVRTHIMPK 293
Query: 212 TIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDR 271
++ + + E + GKP+ ++ I P + + L L+ EL +
Sbjct: 294 IMLPKSMGVSREDIETL--GKPLYTDDPKGVQ----ILPPPDVNSAGMNLQLLESELTEV 347
Query: 272 TGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQH 330
TG+S ++G + N TAT S+ Q G + +R + +E LF L+ ++
Sbjct: 348 TGVSPQNNG--AQTAHNETATEISIKAQEGGRRSADYIRQYNETFIEPLFDRFAMLVFKY 405
Query: 331 QD 332
+
Sbjct: 406 GE 407
>gi|315929405|gb|EFV08607.1| hypothetical protein CSS_1407 [Campylobacter jejuni subsp. jejuni
305]
Length = 512
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 56/302 (18%), Positives = 119/302 (39%), Gaps = 41/302 (13%)
Query: 42 QGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
+G ++ V D P++++ E + ++YLT + + ++R+ +
Sbjct: 138 KGMPRIERVDIDSIFFDPNALNSEDVGYIVNEIYLTYNQI----HERQKL-------GFY 186
Query: 102 IENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW- 160
+ K ++ D + ++ Y++Y + D ++ L ++N+L NE
Sbjct: 187 KKIEIKKLFDE--DDEYKKVKLYDIYERKNDDEWVVSTLF---------ENNLLRNEVTL 235
Query: 161 -NELPFTCLRAMRAPHCF--------IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
+ PF + GE + AS + +Q + +D + P+
Sbjct: 236 QDGQPFIWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDEINITRNLLIDAVRTHIMPK 295
Query: 212 TIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDR 271
++ + + E + GKPI ++ I P + + L L+ EL +
Sbjct: 296 IMMPKSMGVSREDIETL--GKPIYTDDPKGVQ----ILPPPNVNSAGMNLQLLESELTEV 349
Query: 272 TGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQH 330
TG+S ++G + QN TAT S+ Q G + +R + +E LF L+ ++
Sbjct: 350 TGVSPQNNG--AQTAQNETATEISIKAQEGGRRSADYIRQYNETFIEPLFDRFAMLVFKY 407
Query: 331 QD 332
+
Sbjct: 408 GE 409
>gi|154174760|ref|YP_001409087.1| hypothetical protein CCV52592_0034 [Campylobacter curvus 525.92]
gi|153793129|gb|EAU00312.2| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 554
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 60/306 (19%), Positives = 115/306 (37%), Gaps = 46/306 (15%)
Query: 41 SQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDL----ISMGYDRESINNLPI 96
+G ++ V D+ P++ D + ++ L+ DL YD+E+ N L
Sbjct: 134 RKGLPVIEEVELDDIFFDPEAKDHDDIRYYVNRISLSYEDLGNLAKQKIYDKEATNEL-- 191
Query: 97 ISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILC 156
+ + + ++ LE+ + YE + D + +A +L
Sbjct: 192 ---ISRDEAKERRYDR-----LEIYDVYEC------END---KWYLSTIADNA----LLR 230
Query: 157 N--EEWNELPFTCLRAMRAPHCF--------IGESLAASIIEIQKIKTVLLRQTLDNLYW 206
+ E + PF + F GE ASI+ +Q+ +D +
Sbjct: 231 DKVELKDGCPFILGYMVPQVRDFSEQNFVCAYGEPPLASILPLQEEMNFARNSLIDAMNM 290
Query: 207 QNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQ 266
+P+ IV + I + GKP+ I V P I + + +D
Sbjct: 291 HLKPKAIVPLSANISRTDLET--IGKPVYAQTPAQITFV----PPPNIGSAQINISLIDN 344
Query: 267 ELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLR 325
E+ + +G+S +G + TAT S++ G +V+ VR+ + +E LF L
Sbjct: 345 EMSEASGVSPQQNG--ATTPRKETATMASIMANEGSVRVQGYVRSFNETFIEPLFERLAM 402
Query: 326 LIIQHQ 331
L+ ++
Sbjct: 403 LVWKYG 408
>gi|283956319|ref|ZP_06373799.1| hypothetical protein C1336_000250090 [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792039|gb|EFC30828.1| hypothetical protein C1336_000250090 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 512
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/302 (18%), Positives = 113/302 (37%), Gaps = 41/302 (13%)
Query: 42 QGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
+G ++ V D P++++ E + ++YLT N + +
Sbjct: 138 KGMPRIERVDIDSIFFDPNALNSEDVGYIVNEIYLTY-------------NQIHERQNLG 184
Query: 102 IENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW- 160
+ K D + ++ Y++Y + D ++ L ++N+L N+
Sbjct: 185 FYKNIEIQKLFDEDDEYKKVKLYDIYERKNDDEWVVSTLF---------ENNLLRNKVTL 235
Query: 161 -NELPFTCLRAMRAPHCF--------IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
+ PF + GE + AS + +Q + +D + P+
Sbjct: 236 QDGQPFVWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDEINITRNLLIDAVRTHIMPK 295
Query: 212 TIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDR 271
++ + + E + GKPI ++ I P + + L L+ EL +
Sbjct: 296 IMMPKSMGVSREDIETL--GKPIYTDDPKGVQ----ILPPPNVNSAGMNLQLLESELTEV 349
Query: 272 TGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQH 330
TG+S ++G + QN TAT S+ Q G + +R + +E LF L+ ++
Sbjct: 350 TGVSPQNNG--AQTAQNETATEISIKAQEGGRRSADYIRQYNETFIEPLFDRFAMLVFKY 407
Query: 331 QD 332
+
Sbjct: 408 GE 409
>gi|57237581|ref|YP_178595.1| hypothetical protein CJE0579 [Campylobacter jejuni RM1221]
gi|57166385|gb|AAW35164.1| hypothetical protein CJE0579 [Campylobacter jejuni RM1221]
Length = 512
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/302 (18%), Positives = 119/302 (39%), Gaps = 41/302 (13%)
Query: 42 QGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQN 101
+G ++ V D P++++ E + ++YLT + + ++R+ +
Sbjct: 138 KGMPRIERVDIDSIFFDPNALNSEDVGYIVNEIYLTYNQI----HERQKL-------GFY 186
Query: 102 IENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW- 160
+N K ++ D + ++ Y++Y + D ++ L ++N+L NE
Sbjct: 187 KKNEIKKLFDE--DDEYKKVKLYDIYERKNDDEWVVSTLF---------ENNLLRNEVTL 235
Query: 161 -NELPFTCLRAMRAPHCF--------IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
+ PF + GE + AS + +Q + +D + P+
Sbjct: 236 QDGQPFIWGSMLPQLKKIDNENYVSAYGEPIMASAMPLQDEINITRNLLIDAVRTHIMPK 295
Query: 212 TIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDR 271
++ + + E + GKPI ++ I P + + L L+ EL +
Sbjct: 296 IMMPKSMGVSREDIETL--GKPIYTDDPKGVQ----ILPPPNVNSAGMNLQLLESELTEV 349
Query: 272 TGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLEILFRGLLRLIIQH 330
G+S ++G + QN TAT S+ Q G + +R + +E LF L+ ++
Sbjct: 350 IGVSPQNNG--AQTAQNETATEISIKAQEGGRRSADYIRQYNETFIEPLFDRFAMLVFKY 407
Query: 331 QD 332
+
Sbjct: 408 GE 409
>gi|113461527|ref|YP_719596.1| hypothetical protein HS_1384 [Haemophilus somnus 129PT]
gi|112823570|gb|ABI25659.1| hemophilus-specific protein, uncharacterized [Haemophilus somnus
129PT]
Length = 688
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 104/337 (30%), Gaps = 49/337 (14%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
+++ V+ ++ D G + S+ V V P +F+ + ++
Sbjct: 123 ILRGPVVDTIDERIWSDDGMGNWSA---QTKSKIVPKVRLVLPWDFVPDMTAPTLKDCQF 179
Query: 70 VGRKLYLTRSDLISM----GYDRESINNLPIISSQNIENTWKFPK------------NQY 113
V + YLT+ L ++ Y +++ L + + +
Sbjct: 180 VFERSYLTKKQLQNLLNNPYYLADTVQALIESEASETHTSSSDMDGYLDTLRTLSGLEKA 239
Query: 114 SDKALEMIEYYELYVTIDY-------------------DGDGIAELRRVIMAGGTGKDNI 154
S+ + Y + + AE+ VI+ G GK
Sbjct: 240 SNDKRYEVWTYHGGIPVSVLEQANQSLEEGYALELTEEQKSEKAEIDGVIVMTGNGKILS 299
Query: 155 LCNEEWN--ELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQT 212
+ + E P++ C G + + Q+I R +DN Q
Sbjct: 300 VNLNPLDTAEFPYSVYTCEPDVACVFGFGIPYLCRDAQEILNTAWRGMIDNGVLTIGSQI 359
Query: 213 IVQEGSIIDPESVLNPQFGKPIRV------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLD 265
+V + + + K R A + + G+ + ++ +++
Sbjct: 360 VVNSSVLSPVDKSWEIKPNKLWRTNDRASANASFEAQRAFGVFNFESRQQELANIIQLAK 419
Query: 266 QELVDRTGISDISSGFSPEILQNMTATATSLIEQSGV 302
+ + +G+ I+ G ++ T S++ +
Sbjct: 420 SFMDEESGLPMIAQGEQGQVTP--TLGGMSMLMNAAN 454
>gi|170719076|ref|YP_001784230.1| hypothetical protein HSM_0898 [Haemophilus somnus 2336]
gi|168827205|gb|ACA32576.1| Haemophilus-specific protein, uncharacterized [Haemophilus somnus
2336]
Length = 725
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 104/337 (30%), Gaps = 49/337 (14%)
Query: 10 LIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPI 69
+++ V+ ++ D G + S+ V V P +F+ + ++
Sbjct: 160 ILRGPVVDTIDERIWSDDGMGNWSA---QTKSKIVPKVRLVLPWDFVPDMTAPTLKDCQF 216
Query: 70 VGRKLYLTRSDLISM----GYDRESINNLPIISSQNIENTWKFPK------------NQY 113
V + YLT+ L ++ Y +++ L + + +
Sbjct: 217 VFERSYLTKKQLQNLLNNPYYLADTVQALIESEASETHTSSSDMDGYLDTLRTLSGLEKA 276
Query: 114 SDKALEMIEYYELYVTIDY-------------------DGDGIAELRRVIMAGGTGKDNI 154
S+ + Y + + AE+ VI+ G GK
Sbjct: 277 SNDKRYEVWTYHGGIPVSVLEQANQSLEEGYALELTEEQKSEKAEIDGVIVMTGNGKILS 336
Query: 155 LCNEEWN--ELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQT 212
+ + E P++ C G + + Q+I R +DN Q
Sbjct: 337 VNLNPLDTAEFPYSVYTCEPDVACVFGFGIPYLCRDAQEILNTAWRGMIDNGVLTIGSQI 396
Query: 213 IVQEGSIIDPESVLNPQFGKPIRV------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLD 265
+V + + + K R A + + G+ + ++ +++
Sbjct: 397 VVNSSVLSPVDKSWEIKPNKLWRTNDRASANASFEAQRAFGVFNFESRQQELANIIQLAK 456
Query: 266 QELVDRTGISDISSGFSPEILQNMTATATSLIEQSGV 302
+ + +G+ I+ G ++ T S++ +
Sbjct: 457 SFMDEESGLPMIAQGEQGQVTP--TLGGMSMLMNAAN 491
>gi|171914969|ref|ZP_02930439.1| hypothetical protein VspiD_27370 [Verrucomicrobium spinosum DSM
4136]
Length = 711
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 9/240 (3%)
Query: 76 LTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM--IEYYELYVTIDYD 133
LT ++ + + + + S E+ P + ++ + E ++ +D
Sbjct: 312 LTDAETRELYHAAKERSESLKPESARSESAPADPDQDDPNGSIPNLPVRLIEGFMRVDAL 371
Query: 134 GDGIAELRRVIMAGG----TGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEI 189
G G A ++ A D + +LP R P +G ++
Sbjct: 372 GKGQASNIYMVFAPQCEMCLKLDYLGNITPKGKLPVHAHTINRLPWRIVGRGFFERFDKV 431
Query: 190 QKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFG--KPIRVAAGMDIRSVLG 247
Q L + + + P T + + + + F KP+ + + +
Sbjct: 432 QTFVDDLFNRINWHDRKSSDPITGFDKSKLAQEDEEEDEPFNSEKPLNLKPDSKLDEAIQ 491
Query: 248 IHSVPMIE-KSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVE 306
++P + ++ ML + Q + RTGI+ + G + + TAT + ++
Sbjct: 492 FKALPDLNDRTKEMLQMMVQMVQLRTGITAANQGDVAGLPEASTATGIKQLMSRAAVLLK 551
>gi|115304377|ref|YP_762669.1| PfWMP4_39 [Cyanophage Pf-WMP4]
gi|113201871|gb|ABI33183.1| PfWMP4_39 [Phormidium phage Pf-WMP4]
Length = 641
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/326 (14%), Positives = 104/326 (31%), Gaps = 18/326 (5%)
Query: 33 DLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGY-DRESI 91
D+ + R + ++ ++ +SP + + + + R +L++ GY D +
Sbjct: 186 DVAVNR--QRSELRIEPLSPYDVWLDTSGGKNTGTFVRLRHTREELHELVTSGYYDLDLT 243
Query: 92 NNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGK 151
+ + + N ++IEY Y + +G + V G
Sbjct: 244 QVEQYVDYKFADPDTPKDVNGTDTSGWDIIEY---YGPLLVEGVQFWCVHAVFY--GKQL 298
Query: 152 DNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
+ ++ W PF + G S+ + + VL LDNL
Sbjct: 299 IRLSDSKYWCGSPFVTTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKM 358
Query: 212 TIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDR 271
+ E I+ E V + G +VA ++ + ++ + +
Sbjct: 359 WTLVEDGILKREDV-KAKPGAVFKVAQHGSLQPID--MGRQDFVVTYQEAQVQESSVYRN 415
Query: 272 TGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLE-ILFRGLLRLIIQH 330
T + +P + +TA + +G ++ + + L + L+ Q
Sbjct: 416 TSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSSTLPLLNKVFSLLQQF 475
Query: 331 QDKVRMVRL------RDQWVSFDPRY 350
+R+ D + P Y
Sbjct: 476 YVTPETIRMYVPEEQMDGFFEVSPEY 501
>gi|291334833|gb|ADD94473.1| hypothetical protein [uncultured phage MedDCM-OCT-S06-C1041]
Length = 110
Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 10 LIKDSDV--EVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVD--IE 65
L+ D +V E++E S E E ++ + G + ++ V P+EF I ++ +E
Sbjct: 38 LLSDPNVQREIIEDSVEET--EFGLNVEFKVIEKMGSIRIEPVPPEEFGIARNARSPYVE 95
Query: 66 KSPIVGRKLYLTR 78
+ + +
Sbjct: 96 DTNFCYHRTLKSF 108
>gi|313113989|ref|ZP_07799544.1| hypothetical protein HMPREF9436_01396 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623691|gb|EFQ07091.1| hypothetical protein HMPREF9436_01396 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 649
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/324 (14%), Positives = 110/324 (33%), Gaps = 37/324 (11%)
Query: 43 GKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNI 102
G++C+ +V+ P DI+ +P + + D + + + +
Sbjct: 172 GEICIRSVNLLMLYWEPGVEDIQDTPHLFSLSLM----------DNDQLEGRYPQMAGHT 221
Query: 103 ENTWKFPKNQYSDKAL--EMIEYYELYVTIDYDGDGIAELR-----RVIMAGGTGKDNIL 155
++ K + D + + Y +G V++
Sbjct: 222 GSSMDVAKYIHDDSIDTGDKSVVVDWYYKKALEGGQTVLHYCKYCNGVVLYASENDPQYA 281
Query: 156 CNEEWNE--LPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTI 213
++ PF R G + + Q + +N+ + + +
Sbjct: 282 QRGFYDHGKYPFVFDPLFREEDSPAGFGYIDVMKDTQTAIDEMNHAMDENVKLAAKARYV 341
Query: 214 VQEGSIIDPESVLNPQFGK-PIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRT 272
+ + + ++ E + + FGK + V + S + + + S EL + +
Sbjct: 342 LSDTAGVNEEELAD--FGKDIVHVVGRLTDDSFRPLQTNVLSGNCISYRDARVSELKEIS 399
Query: 273 GISDISSGFSPEILQNMTATATSLIEQSG----VGQVELIVRTLAQGLEILFRGLLRLII 328
G D+S G + L A+A + ++++G ++ RT A + + + L+
Sbjct: 400 GNRDVSQGGTTSGL--TAASAIAALQEAGSKLSRDMLKSAYRTFA---KECYLVI-ELMR 453
Query: 329 QHQDKVRMVRLRD-----QWVSFD 347
Q D+ R+ R+ ++V F
Sbjct: 454 QFYDEERVYRITGESGGVEYVPFS 477
>gi|75760981|ref|ZP_00740986.1| Phage protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74491524|gb|EAO54735.1| Phage protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 304
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 11/195 (5%)
Query: 39 KYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIIS 98
K G++ P I P + E+ + + D I Y ++ + +
Sbjct: 113 KLYTGEIRCRICDPLTVYIDPAAEMDEEIRWIVERKPRDI-DYIQERYGKDVAADENVGF 171
Query: 99 SQNIENTWKFPKNQYSDKALEMIEYYELYVT-IDYDGDGIAELRRVIMAGGTGKDNILCN 157
+ + T + N S K M E++V +G+ +V +AGG +L
Sbjct: 172 AAAFDVTPQNGFNSTSKKRPNMAMVDEMWVKPCGKHPNGL----KVTIAGGQ----LLDI 223
Query: 158 EE-WNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQE 216
+E ++PF + P E+ ++ IQ+ ++ + +V
Sbjct: 224 DENAGDIPFFIFGDIPIPGSVKAEAFIKDMLPIQREINIMRSMFATHARKMGNSMWLVPM 283
Query: 217 GSIIDPESVLNPQFG 231
GS +D + + N + G
Sbjct: 284 GSSVDEDEITNEEGG 298
>gi|153212119|ref|ZP_01947936.1| hypothetical protein A55_1887 [Vibrio cholerae 1587]
gi|124116915|gb|EAY35735.1| hypothetical protein A55_1887 [Vibrio cholerae 1587]
Length = 740
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/318 (17%), Positives = 107/318 (33%), Gaps = 48/318 (15%)
Query: 25 EDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISM 84
+ G + + I R S AV P +F+ + I+ S + YLTR L+
Sbjct: 197 DQTGIEQWEAVIERSAS---PSARAVMPWDFVPDMSATSIDDSEFTFERSYLTRKKLLKT 253
Query: 85 -----GY----DRESINNLPIISSQNIENTWKFPKNQYSDKAL------EMIEYYELYVT 129
GY RE P S E+ + L E +E +
Sbjct: 254 MTEQAGYVAKNVRELAEKEPRDSHALTEDVLGTINQIRALNGLQPTYKDRRYEIWEYHGP 313
Query: 130 IDYD-------------GDGIAELRRVIMAGGTG-----KDNILCNEEWNELPFTCLRAM 171
I + +E+ VI+ G G N EEW P++ A
Sbjct: 314 IPREVLQEAGLLTEEEFESTPSEVDGVIVMSGCGLILKAGINPFDTEEW---PYSVYCAE 370
Query: 172 RAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFG 231
C G + + Q I R +DN Q +V + +++ ++ +
Sbjct: 371 EDVSCIFGYGIPHLCSDAQSILNTAWRAMIDNGVATVGDQIVVNQSALMPADNDWSFSPL 430
Query: 232 KPIR------VAAGMDIRSVLGIHSVPMIEKSF-SMLHYLDQELVDRTGISDISSGFSPE 284
K + V+A + + G+ S+ + + +++ + + +G+ IS G +
Sbjct: 431 KVWKTTDKASVSAQFEAQKAFGVFSLQNRQAEYANIISMAKAFMDEESGLPMISQGEQGQ 490
Query: 285 ILQNMTATATSLIEQSGV 302
+ T S++ +
Sbjct: 491 VTP--TLGGMSMLMNAAN 506
>gi|330958837|gb|EGH59097.1| hypothetical genomic island protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 699
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 22/229 (9%)
Query: 132 YDGDGIAELRRVIMAGG--TGKDNILCNEEWNELPFTCLRAMRAPHCF---IGESLAASI 186
+ GI RR+ + K+ +L + + PF + F L
Sbjct: 282 IENGGIQSKRRIKRVRWLVSTKETVLHD---DWSPFNHFTVVPFFPTFRRGHTRGLVDDA 338
Query: 187 IEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK------PIRVAAGM 240
I Q++ + Q L L I G++ + G I+ +
Sbjct: 339 IGPQQLLNKAMSQYLHVLNTSANSGWITVAGTLANMRDEELANRGSETGLHLMIKSKTPV 398
Query: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
+ R I + ++ L TGI++ SG + + A + +
Sbjct: 399 EDRP-QKIQPNQVPTGIDRLIDRAGALLEQSTGINEAMSGNQGNEV---SGIAIQTRQFA 454
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPR 349
Q+ + + LA+ ++L +L +I D+ R++R+ DPR
Sbjct: 455 AQQQLAVPLDNLARTRQMLATRMLEMIQVFYDQPRIIRIT----ETDPR 499
>gi|196232183|ref|ZP_03131038.1| hypothetical protein CfE428DRAFT_4204 [Chthoniobacter flavus
Ellin428]
gi|196223905|gb|EDY18420.1| hypothetical protein CfE428DRAFT_4204 [Chthoniobacter flavus
Ellin428]
Length = 899
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/344 (16%), Positives = 111/344 (32%), Gaps = 54/344 (15%)
Query: 36 IRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSD--LISMGYDRESIN- 92
I Q + + ++FL + SP+ +Y D L + G+ +
Sbjct: 389 IGTDTIQDCLVGAGLQVEDFLYDIKQPKLMDSPLQVH-VYDDELDRVLAAYGHSSDPAEK 447
Query: 93 --------NLPIISSQNIENTWKFPKNQYSD-------KALEMIEYYELYVTIDYDGDGI 137
N P + ++ PK ++ + +E Y + D
Sbjct: 448 YAPLKAGLNFPAPEEDSPKSGASMPKREHGEYYNTQGSSIRRKCNVHECYYRVRLHPDDA 507
Query: 138 AELRRVIMAGGTGKDNI----LCNEEWNELPFTCLRAM-RAPHCFIGESLAASIIEIQKI 192
E ++ + + L N PF LR + P G + E
Sbjct: 508 NETWLFLVLDYARQVPLHAEYLGNMRMKSPPFRILRGLESVPSRAYGVGIYQKFHE---- 563
Query: 193 KTVLLRQTLDNLYWQNQPQTIVQEGSIID---PESVLNPQFGKPIRVAAGMDIRSVLGIH 249
R + YW N+ + + + D ++ + Q + R+ R ++
Sbjct: 564 -----RNLAVD-YWFNRAKLKTTKNASADFMKVDAFIEAQDAQEFRMGGTEIYRVKSELN 617
Query: 250 SVPMIEKS---------------FSMLHYLDQELVDRTGISDISSGFS--PEILQNMTAT 292
P+ + + M+ + Q GI+DI +I ++ TAT
Sbjct: 618 DRPLGPSNPVIWRENLHDQNQLEWEMIQKIIQTGQIEFGIADIGQLQDEGAQIAKDATAT 677
Query: 293 ATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRM 336
AT +E++G +A+ L L + LI+++ D +
Sbjct: 678 ATRNVERTGNTLQRATENMMAEDLTGLCELAIDLILENADLETL 721
>gi|326203482|ref|ZP_08193346.1| hypothetical protein Cpap_1526 [Clostridium papyrosolvens DSM 2782]
gi|325986302|gb|EGD47134.1| hypothetical protein Cpap_1526 [Clostridium papyrosolvens DSM 2782]
Length = 660
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 18/211 (8%)
Query: 143 VIMAGGTGKDNILCNEEWN---------ELPFTCLRAMRAPHCFIGESLAASIIEIQKIK 193
+IMAG DN+L E+ P + P F S+ +I IQ+
Sbjct: 293 IIMAG----DNLLHYGEFIYRVGNDGKYGFPLVMQVCVETPGRFWPVSIIERLIPIQRSF 348
Query: 194 TVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNP--QFGKPIRVAAGMDIRSVLGIHSV 251
L + D L + V++ +D + + GK + G + I +
Sbjct: 349 NALKNRKKDILNRKAIGNWAVEDDGNVDVDDLEEEGFYPGKIHFYSRG--GKPPQEIQNR 406
Query: 252 PMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRT 311
I L E +G+S +S P N AT I++S ++ L
Sbjct: 407 SSITDFDVEEQRLLDEFTTISGVSPFASQSLPPTGSNSGATLEK-IKESDDTRIGLTAEN 465
Query: 312 LAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ 342
+ ++ LR+ Q R++R +
Sbjct: 466 INIAAIASYKIDLRMYRQFAKTPRLLRHVGK 496
>gi|319776214|ref|YP_004138702.1| hypothetical protein HICON_18250 [Haemophilus influenzae F3047]
gi|317450805|emb|CBY87027.1| Putative uncharacterized protein [Haemophilus influenzae F3047]
Length = 731
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 52/342 (15%), Positives = 113/342 (33%), Gaps = 57/342 (16%)
Query: 10 LIKDSDVEVLEHS--HREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKS 67
+++ V+V+E ++ G V ++ + V V P +F+ + ++
Sbjct: 163 ILRAPVVDVVESKAWKQDSLGNWVGEIVNKTI-----PAVRLVLPWDFVPDMTAPTLKDC 217
Query: 68 PIVGRKLYLTRSDLISM----GYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMIEY 123
V + ++T+ L ++ Y +ES+ L + T + Y D +
Sbjct: 218 QFVFERSHVTKKQLQALAKNPYYLKESVLELCELDG-GDTRTASNDMDGYVDTLRTLSGL 276
Query: 124 --------YELYV---------------------TIDYDGDGIA-----ELRRVIMAGGT 149
YEL+ ++ D + E+ VI+ G
Sbjct: 277 ETQSKDNRYELWTYHGGIPLNVLSGANELLGEDNKLNIPDDEESRAANLEIEGVIVMAGN 336
Query: 150 GKDNILCNEEWN--ELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQ 207
GK + + E P++ C G + + Q+I R +DN
Sbjct: 337 GKILSVNLNPLDTAEFPYSVYTCEPDVCCLFGFGIPYLCRDAQEILNTAWRGMIDNGILG 396
Query: 208 NQPQTIVQEGSIIDPESVLNPQFGKPIR------VAAGMDIRSVLGIHSVPMIEKSFSML 261
PQ +V + + K + V A + + GI + ++ + +
Sbjct: 397 IGPQAVVNSSVLTPVDGNWELAPYKLWKTNDRATVNAQFEAQRAFGIFDIGSRQQELANI 456
Query: 262 HYL-DQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGV 302
L + + +G+ I+ G ++ T S++ +
Sbjct: 457 IQLSKSFMDEESGLPMIAQGEQGQVTP--TLGGMSMLMNAAN 496
>gi|148747833|ref|YP_001285799.1| portal protein [Phormidium phage Pf-WMP3]
gi|146230066|gb|ABQ12474.1| portal protein [Phormidium phage Pf-WMP3]
Length = 651
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/324 (14%), Positives = 113/324 (34%), Gaps = 17/324 (5%)
Query: 29 EKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSD---LISMG 85
E ++ + + + + + P+ D + + RKL T++D L+S G
Sbjct: 181 EPTFEVVSEEREVKSSPDFEVLDMFDCFYDPNVTDPNRGAFI-RKLTKTKADILNLLSEG 239
Query: 86 Y-----DRESINNLPIISSQNIENTWKFPKNQYSD--KALEMIEYYELYVTIDYDGDGIA 138
Y + + + +S ++ + + + +E E + D +
Sbjct: 240 YYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYW--GDIHLENKT 297
Query: 139 ELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLR 198
V+ G N W PF + + + ++
Sbjct: 298 YHDVVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITN 357
Query: 199 QTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSF 258
Q LDNL ++ ++ PE V + GK V+ D++ + + ++
Sbjct: 358 QRLDNLELAIDQMYTLRSDGLLQPEDVYT-EPGKVFLVSDHGDLQPL--ANQSSNFSITY 414
Query: 259 SMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQ-GLE 317
+L+ + G + + + +TA + + ++G ++ I + + + L
Sbjct: 415 QESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLL 474
Query: 318 ILFRGLLRLIIQHQDKVRMVRLRD 341
+L ++ L+ Q D+ MVR+
Sbjct: 475 VLLEKVMHLVQQFTDQPGMVRVAG 498
>gi|225155390|ref|ZP_03723882.1| hypothetical protein ObacDRAFT_9438 [Opitutaceae bacterium TAV2]
gi|224803846|gb|EEG22077.1| hypothetical protein ObacDRAFT_9438 [Opitutaceae bacterium TAV2]
Length = 672
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/330 (12%), Positives = 94/330 (28%), Gaps = 29/330 (8%)
Query: 39 KYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLI------SMGYDRESIN 92
+ S+ ++ ++A++ + ++ + + + ++ + D ++IN
Sbjct: 126 ETSRKRLKIEAINRYDVIVPNWTGRLADCDWIVHVQRFSKHAFRRLVKRMAWTIDDDTIN 185
Query: 93 NLPIISSQNIENTWKFPKNQ-----YSDKALEMIEYYELYVTIDYDGDGIAELRRVIMA- 146
L + N S + I +E+Y D DG I + +
Sbjct: 186 ALAGQDATNTGAASAEQSKFQRQGITSPSKDDEIVLWEVYSRND-DGAWIIKTYSPVRPE 244
Query: 147 -------GGTGKDNILCNEEWNELPFTCLRAMRAPHCFI-GESLAASIIEIQKIKTVLLR 198
G + + PF + + + + +
Sbjct: 245 QVLRPDFGLPYNQGVFADS-LPPPPFFEISCELKDRGYYDSRGIVKRVAPFEASLCKDWN 303
Query: 199 QTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSF 258
D + P S + S L Q G+ + + + + +
Sbjct: 304 TVKDYQTLTSTPILTASARSDVGNNSTLRFQPGQVLPF-------PLSAVQMPTLPVDTQ 356
Query: 259 SMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEI 318
+ Q G+ D +G + TA SLI V++ R + L
Sbjct: 357 QGMLGTRQTAEQLVGVPDFGTGSQQPSGERKTAKEVSLIANVMGQSVDMRARIFRKELAH 416
Query: 319 LFRGLLRLIIQHQDKVRMVRLRDQWVSFDP 348
+ ++ Q+ + + D + P
Sbjct: 417 GLAIMWAILSQYAREELDYFVLDNLIQIPP 446
>gi|281357154|ref|ZP_06243643.1| hypothetical protein Vvad_PD2246 [Victivallis vadensis ATCC
BAA-548]
gi|281316185|gb|EFB00210.1| hypothetical protein Vvad_PD2246 [Victivallis vadensis ATCC
BAA-548]
Length = 752
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 7/157 (4%)
Query: 176 CFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQ-EGSIIDPESVLNPQFGKPI 234
GE +A + +Q+ L+R +NL PQ I+ + + P L K
Sbjct: 432 SIWGEGIADLLHHVQRSVNSLMRSRNNNLALAGAPQVIINTDAVRLKPGEPLQITPFKQW 491
Query: 235 RVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELV--DR-TGISDISSGFSPEILQNM-- 289
V+ + + + + S S+ L++ELV DR +GI + S G S
Sbjct: 492 FVSGSGYYGAQKPFELMQIPDVSDSLSRELEKELVFADRISGIPEYSQGVSKGAENGAAG 551
Query: 290 TATATSLIEQSGVGQVELIVRTLAQGLEI-LFRGLLR 325
TA+ S++ + Q++ + + +GL L R L
Sbjct: 552 TASGLSMLLDAASNQIKDPINNIDEGLYEPLIRDLYY 588
>gi|239907145|ref|YP_002953886.1| hypothetical protein DMR_25090 [Desulfovibrio magneticus RS-1]
gi|239797011|dbj|BAH76000.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 682
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 88/304 (28%), Gaps = 26/304 (8%)
Query: 42 QGKVCVDAVSPDEFLIHPDS-VDIEKSPIVGRKLYLTRSDLISM----GYDRESIN---- 92
+ + VSP F + + + + D++ + G+D + +
Sbjct: 208 ERRPYYRRVSPWSFYWDQSANRRMGDCRYGYEEYRMVYGDVLELAGRTGFDGDVVRAYLA 267
Query: 93 --NLPIISSQNIENTWKFPKNQYSDKALEMIE-YYELY--VTID-YDGDGIAELRRVIMA 146
+ + E+ + + L+ E Y + D + G+ + A
Sbjct: 268 EKRDGDATEYDFESQLRSINGGTPEPQLQGRWRVLERYGWLRGDELEECGVDLGNDPVQA 327
Query: 147 GGTGKDNILCNEEWN---------ELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLL 197
+L + E PF R G + + Q ++
Sbjct: 328 DYFCNVWMLGGKIIKAVRAPIRGVEFPFQIFPMFRDDSSLCGLGVTGVYRDAQSAINAVV 387
Query: 198 RQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDI-RSVLGIHSVPMIEK 256
R +DN P V ++ N + G ++ G D+ +++ +
Sbjct: 388 RAMMDNARMSLGPIGGVNVPALQQTLDADNIRGGTWLKFDTGEDMSKAITFWQASSHTSD 447
Query: 257 SFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGL 316
++ Y D + T + G T S++ + + +V+ +
Sbjct: 448 YLALAKYFDDMGDELT-VPRWVHGDGNVSDAARTLGGLSMLMNAMSINLAEMVKIFDDEV 506
Query: 317 EILF 320
F
Sbjct: 507 TSQF 510
>gi|225158777|ref|ZP_03725094.1| hypothetical protein ObacDRAFT_8203 [Opitutaceae bacterium TAV2]
gi|224802612|gb|EEG20867.1| hypothetical protein ObacDRAFT_8203 [Opitutaceae bacterium TAV2]
Length = 562
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 92/303 (30%), Gaps = 34/303 (11%)
Query: 38 RKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPII 97
R G + V F+I D+ + + + +
Sbjct: 149 RGQRGGLLNFTNVPVGTFVIEEDAEGLVDTVFREFR------------FTARQCAQKWGE 196
Query: 98 SSQNIENTWKFPKNQYSDKALEMIEYYELYVTID-YDGDGIAELRRVIMAG-GTGKDNIL 155
+ SD+ + +Y D G GI + R + +++
Sbjct: 197 DKLSKPMLDALNSKTASDRDKRFQIIHAVYPRRDGKQGPGIGKKRPIASVYVDKQAIHVI 256
Query: 156 CNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQ 215
+ E+P R +R + G ++ K+ + R L +L Q P +
Sbjct: 257 EEGGFYEMPIAVARLLRGNNEIYGRGPGDQVMPEIKLVNRMERDLLLSLEQQVNPPWLAP 316
Query: 216 EGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGIS 275
+ S P+ + G + ++ P + + L D+ L D+ +
Sbjct: 317 QDSSWRPD----NRPGGVF------YWDASNP-NNKPERLRDTARLDIGDKVLNDKREVI 365
Query: 276 DIS-------SGFSPEILQN-MTATATSLIEQSGVGQVE-LIVRTLAQGLEILFRGLLRL 326
+ +P+ ++ TA + + Q + + R + L + + +
Sbjct: 366 RRAWFVDMFKMLSNPDAMKRDKTAFEVAQLMQEKLVLFHPMFARITQEKLNPVLERVFNI 425
Query: 327 IIQ 329
+++
Sbjct: 426 LMR 428
>gi|288957023|ref|YP_003447364.1| hypothetical protein AZL_001820 [Azospirillum sp. B510]
gi|288909331|dbj|BAI70820.1| hypothetical protein AZL_001820 [Azospirillum sp. B510]
Length = 534
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 30/273 (10%)
Query: 41 SQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQ 100
+ + AV + ++ + R+ T + + + P
Sbjct: 161 AVSSLRFTAVPLADAVLEEGPDGRLDATF--RRSEATLAQI---------LQRFPGAG-- 207
Query: 101 NIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW 160
+ + ++ E V DG A V++ G + L +
Sbjct: 208 ----LPDELRRRAAEDPDHRFPLVEAVVP-----DGAAYRWGVVLDSGLADPSWLAQGRF 258
Query: 161 NELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSII 220
+ PF R ++AP G S + K ++ L N + ++
Sbjct: 259 AQSPFVNFRWLKAPGETYGRSPVMKALPDIKTANKVVELVLKNASIAVTGIWQADDDGVL 318
Query: 221 DPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQE-----LVDRTGIS 275
+P ++ G I A G + + + + S +L L LVDR G
Sbjct: 319 NPSTI-RLVPGTIIPKAVGSAG--LTPLANPGRFDVSQLVLDDLRGRIRHALLVDRLGPV 375
Query: 276 DISSGFSPEILQNMTATATSLIEQSGVGQVELI 308
D + + E+L+ A L G Q EL+
Sbjct: 376 DSARMTATEVLERSVEMARLLGATYGRLQAELM 408
>gi|295425358|ref|ZP_06818061.1| leucine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
gi|295065134|gb|EFG56039.1| leucine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
Length = 804
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 73/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFS-MLHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + M++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLMVNDLDLKAIPQEKIVDENDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYNETVKKVTEDFDALHFNTAISQMMVFANAAQKAKTIPREYAEGFVKLLAPIAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ + +W ++DP
Sbjct: 715 -----EIWSVFGHDESITYAKWPTYDP 736
>gi|218781805|ref|YP_002433123.1| hypothetical protein Dalk_3969 [Desulfatibacillum alkenivorans
AK-01]
gi|218763189|gb|ACL05655.1| hypothetical protein Dalk_3969 [Desulfatibacillum alkenivorans
AK-01]
Length = 643
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 47/350 (13%), Positives = 116/350 (33%), Gaps = 43/350 (12%)
Query: 34 LRIRRKYSQGKVCVDAVSPDEFLIHP--DSVDIEKSPIVGRKLYLTRSDLISMGY--DRE 89
+ R G + + + FL+ P D+ + R+ LT+ + S+ R
Sbjct: 132 VDYSRDPLNGDIKIKRAPHNRFLLDPAFSERDLSDCNYICRRELLTKDAVRSILPAGKRH 191
Query: 90 SINNL-PIISSQNIENTWKFPKNQYSDKALE--MIEYYEL---YVTID--------YDGD 135
I+N+ P + +N D L + +D + GD
Sbjct: 192 LIDNISPRGVADGKYEYGALARNPAGDNLLRYDEFWTRTHKPLTILMDPAAGLSLPWKGD 251
Query: 136 GIA---------------ELRRVIMAGGTGKDNILCNEE----WNELPFTCLRAMRAPH- 175
+RR + +D ++ + PF + P
Sbjct: 252 AQTLERLLSAHPGLKIFETMRRSVELAVFVEDQLIHQGPEPGGLEDFPFVPVLGFFEPEY 311
Query: 176 ---CFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
+ + + + + Q + LD + Q +E S+++PE++ G+
Sbjct: 312 DQASWKLQGIVRCMRDPQTEVNKRRSKMLDIIDSQISTGWKARENSVVNPEALYQSGQGQ 371
Query: 233 PIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTAT 292
+ + D+ + + + LD+++++ G + G + +
Sbjct: 372 VVWMKG--DMDQAQRLLPPDIPAGLMQLSEILDKDIMEIPGANSELFGMAESDHMQIAGI 429
Query: 293 ATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ 342
+ + +G+ ++ I +++ + L++LI + ++ R+ Q
Sbjct: 430 LAKMRQAAGLTILQDIFDNYRLAKKLVGQKLIKLIQANYTPQKVSRILGQ 479
>gi|209544596|ref|YP_002276825.1| hypothetical protein Gdia_2465 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532273|gb|ACI52210.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 730
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 96/319 (30%), Gaps = 34/319 (10%)
Query: 48 DAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRS-DLISMGYDRESINNLPIISSQNIENTW 106
+ V P I+ + + +T DL Y E + + +
Sbjct: 235 ETVDPLRLCINYKAKSFATA------ARMTEEIDL----YPWEIEERIRAGLFLDEDYGT 284
Query: 107 KFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGK--------------- 151
+ A + + E + D DGDG AE V +A +G+
Sbjct: 285 NHDDGSQDEDA--PVTFLEQHRRWDLDGDGYAEPYIVTIARDSGQLARIVAGFDADGVMF 342
Query: 152 -DNILCNEEWNELPFTC-LRAMRAPHC-FIGESLAASIIEIQKIKTVLLRQTLDNLYWQN 208
+ +P+ + + +P + + + L Q D + N
Sbjct: 343 DPVTHRIRKIEAVPYYTRFQFIPSPQSAIYAMGFGSLLYPLNGAINTSLNQMFDAGHLAN 402
Query: 209 QPQTIVQEGSIIDPESV-LNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQE 267
+ G ++ SV K + +++ + F +L YL +
Sbjct: 403 AGGGFIGSGMSLNTGSVRFQVGEYKVVNTPGATLRENMVPLQFPGPSPALFQLLQYLVEA 462
Query: 268 LVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLI 327
+ I DI SG P N + Q G+ I + + + L F L RL
Sbjct: 463 GREIASIKDILSGAMPGG--NTPGILGLAVIQQGMKVFSAIFKRVHRALGAEFDKLYRLN 520
Query: 328 IQHQDKVRMVRLRDQWVSF 346
+ RL +Q+
Sbjct: 521 RLYLPDDAGYRLGEQYFEV 539
>gi|225155663|ref|ZP_03724152.1| hypothetical protein ObacDRAFT_9274 [Opitutaceae bacterium TAV2]
gi|224803636|gb|EEG21870.1| hypothetical protein ObacDRAFT_9274 [Opitutaceae bacterium TAV2]
Length = 657
Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 44/298 (14%), Positives = 94/298 (31%), Gaps = 42/298 (14%)
Query: 46 CVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRES--INNLPIISSQNIE 103
+ V D FL + + + L++ YD++ I ++ I +
Sbjct: 248 RSEIVPSDRFLCPVNVASPDDAK------------LVAELYDKDIAWIEDMWI---ERPW 292
Query: 104 NTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMA---------GGTGKDNI 154
W+ K +++ + E D D LR++I G + I
Sbjct: 293 AIWEEVKGEFTQSGADEKTEGESKAKEDATHDDKESLRKIIECWGRRDVLGLEGPQEFVI 352
Query: 155 LCNEEWNE---------------LPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQ 199
+E+ PFT + R + G+S+ + + Q+
Sbjct: 353 FIDEDSERAVFYEFTAKVCPDFKRPFTTIAVGRTRRRWWGKSIPEKVAQYQEKIDENFNG 412
Query: 200 TLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIE-KSF 258
P V + ++ E L K + + + +P + K+
Sbjct: 413 EAYRNLMNANPLKGVNPDATVEEEEDLVFDPEKVYHLKLNKKMEDFVSFAKLPDADFKTR 472
Query: 259 SMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGL 316
+ ++ + ISD+ +G + +N TAT + ++ R + +G
Sbjct: 473 DIAQFVFWFVQRWLHISDVGTGDYEALPENNTATGIEINREASQSTSRRWNRRINEGY 530
>gi|239787361|emb|CAX83837.1| Head-to-tail joining protein [uncultured bacterium]
Length = 524
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 29/273 (10%)
Query: 41 SQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQ 100
S A+ + + + R +T S I + + + S+
Sbjct: 151 SASAFRFTAIPLAQLALEESVEGRLDTTF--RSSEMTISA-IRERFPKAQLPESMGRKSK 207
Query: 101 NIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEW 160
+ +F + Y+ + DG+G TG L +
Sbjct: 208 -DDADARFKVVEAVLPERHGYAYHAI-----LDGEG------------TGGAETLAEGRF 249
Query: 161 NELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSII 220
PF R ++AP G S + K ++ L N + ++
Sbjct: 250 EMSPFINFRWLKAPGEVYGRSPVMKSLPDIKTANKVVELVLKNATIAVTGIWQADDDGVL 309
Query: 221 DPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQE-----LVDRTGIS 275
+P ++ G I A G + + + + S ML L Q L DR G
Sbjct: 310 NPANI-KLVPGTIIPKAVGSAG--LTPLETPGRFDISQLMLTDLRQRISHALLADRLGQI 366
Query: 276 DISSGFSPEILQNMTATATSLIEQSGVGQVELI 308
D + + E+L+ A L G Q EL+
Sbjct: 367 DAPNMTATEVLERSAEMARLLGATYGRLQSELL 399
>gi|218782387|ref|YP_002433705.1| hypothetical protein Dalk_4559 [Desulfatibacillum alkenivorans
AK-01]
gi|218763771|gb|ACL06237.1| hypothetical protein Dalk_4559 [Desulfatibacillum alkenivorans
AK-01]
Length = 704
Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 66/183 (36%), Gaps = 15/183 (8%)
Query: 166 TCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESV 225
R + G + + + Q+ Q L+ L QP T +++G++ D +
Sbjct: 340 ANTDPSRRSNNHFG--VIRLMKDPQREINKRWSQALNLLNNMVQPGTDIEDGAVPDIDQY 397
Query: 226 LNPQ--FGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSP 283
+ G V++G + S P + + + Q+ I +G +P
Sbjct: 398 SEARKTPGGVGIVSSGALRDGKIKERSAPQFPSAPMQMEQMSQD------IIRKITGINP 451
Query: 284 EILQNMTATATSLIEQSGVGQVELI--VRTLAQG---LEILFRGLLRLIIQHQDKVRMVR 338
++L + + + LI + + +F+ ++ +I ++ +++R
Sbjct: 452 DLLGQDSGRQEPGVVVQTRQRQGLILLQKLFKEHKRVRREIFKRVIAIISKYMPDGQILR 511
Query: 339 LRD 341
+
Sbjct: 512 ILG 514
>gi|256843734|ref|ZP_05549222.1| leucyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
gi|256615154|gb|EEU20355.1| leucyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
Length = 804
Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSGF-- 281
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDENDGTLD 654
Query: 282 ------------SPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|83313332|ref|YP_423596.1| hypothetical protein amb4233 [Magnetospirillum magneticum AMB-1]
gi|82948173|dbj|BAE53037.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 545
Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 8/167 (4%)
Query: 147 GGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYW 206
G D +L +++ PF R ++AP G S + K ++ L N
Sbjct: 254 DDDGSDLVLGRGQFSSSPFLNFRWLKAPGEVYGRSPVMKALPDIKTANKVVELVLKNATI 313
Query: 207 QNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQ 266
+ +++P ++ G I A G + + + + S +L L
Sbjct: 314 AVTGIWQADDDGVLNPANI-KLVPGTIIPKAVGSAG--LQPLTAPGRFDTSQLVLDDLRG 370
Query: 267 ELVDRTGISDISSGFSP-----EILQNMTATATSLIEQSGVGQVELI 308
+ +S SP E+LQ A L G Q EL+
Sbjct: 371 RIRHALMGDKLSQPASPALTATEVLQRADDMARLLGATYGRLQSELL 417
>gi|209966578|ref|YP_002299493.1| hypothetical protein RC1_3320 [Rhodospirillum centenum SW]
gi|209960044|gb|ACJ00681.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 521
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 18/175 (10%)
Query: 152 DNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
+L + E PF R M+AP G S + + ++ L N
Sbjct: 252 PVLLAEGRFAEPPFIAFRWMKAPGEVYGRSPVMKALPDIRTANKVVELVLKNASVAVTGI 311
Query: 212 TIVQEGSIIDPESVLNPQFGKPIRVAAGMDI-RSVLGIHSVPM-IEKSFSMLHYLDQELV 269
+ +++P IR+ G I ++V P+ F + + +L
Sbjct: 312 WQADDDGVLNP---------GTIRLVPGAIIPKAVGSAGLTPLASPGRFDVSQLVLDDLR 362
Query: 270 DRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLL 324
+ ++ P MTAT +E+S R L L LL
Sbjct: 363 AHIRHALLADRLGPVQGPRMTATEV--LERSAEM-----ARMLGATYGRLQSELL 410
>gi|58337877|ref|YP_194462.1| leucyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
gi|227904527|ref|ZP_04022332.1| leucyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
gi|81311412|sp|Q5FIP3|SYL_LACAC RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|58255194|gb|AAV43431.1| leucyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
gi|227867736|gb|EEJ75157.1| leucyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
Length = 804
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDENDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESISYAEWSTYDP 736
>gi|23015763|ref|ZP_00055531.1| hypothetical protein Magn03010200 [Magnetospirillum magnetotacticum
MS-1]
Length = 543
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 8/180 (4%)
Query: 147 GGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYW 206
D +L ++ PF R ++AP G S + K ++ L N
Sbjct: 254 DDESSDVVLGRGSFSSSPFLNFRWLKAPGEVYGRSPVMKALPDIKTANKVVELVLKNATI 313
Query: 207 QNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQ 266
+ +++P ++ G I A G + + + + S +L L
Sbjct: 314 AVTGIWQADDDGVLNPANI-KLVPGTIIPKAVGSAG--LQPLTAPGRFDTSQLVLDDLRG 370
Query: 267 ELVDRTGISDISSGFSP-----EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFR 321
+ +S SP E+LQ A L G Q EL+ + + + IL R
Sbjct: 371 RIRHALMGDKLSQPASPSLTATEVLQRSDDMARLLGATYGRLQSELLTPLIMRAIHILRR 430
>gi|227876926|ref|ZP_03995022.1| leucyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
gi|256850182|ref|ZP_05555612.1| leucyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
gi|262047820|ref|ZP_06020770.1| leucyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
gi|227863483|gb|EEJ70906.1| leucyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
gi|256713154|gb|EEU28145.1| leucyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
gi|260571877|gb|EEX28448.1| leucyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
Length = 804
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|293379839|ref|ZP_06625961.1| leucyl-tRNA synthetase [Lactobacillus crispatus 214-1]
gi|290923611|gb|EFE00492.1| leucyl-tRNA synthetase [Lactobacillus crispatus 214-1]
Length = 804
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|162149432|ref|YP_001603893.1| hypothetical protein GDI_3670 [Gluconacetobacter diazotrophicus PAl
5]
gi|161788009|emb|CAP57613.1| hypothetical protein GDI3670 [Gluconacetobacter diazotrophicus PAl
5]
Length = 907
Score = 43.9 bits (102), Expect = 0.040, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 86/304 (28%), Gaps = 49/304 (16%)
Query: 48 DAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWK 107
+ V P I ++ +P ++ I + Y E + + E
Sbjct: 213 ETVDPLRLCIDYNAKSFAAAP--------RITEEIDL-YPWEVEEKIRAGLFLDDEYGCN 263
Query: 108 FPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGK---------------- 151
+ D + + E + D DGDG AE V +A +G+
Sbjct: 264 ---HDAGDDEDAPVTFLEQHRRYDLDGDGYAEPYIVTIARDSGRLARIVAGFESEGVIFG 320
Query: 152 ------DNILCNEEWNELPFTCLRAMRAPHC-FIGESLAASIIEIQKIKTVLLRQTLDNL 204
I + + PF + +P + + L Q D
Sbjct: 321 AADHRIRRIDAVAYYTKFPF-----IPSPDSAIYDIGFGTLLHPLNAAVNTSLNQMFDAA 375
Query: 205 YWQNQPQTIVQEGSIIDPESV-LNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHY 263
+ N + G ++ SV K + +++ + F +L +
Sbjct: 376 HLANAGGGFIGSGMSLNSGSVRFQIGEYKVVNTPGATLRENLVPMQFSGPNPVLFQLLGF 435
Query: 264 LDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQV-----ELIVRTLAQGLEI 318
L + + DI SG P L +V + I R+L
Sbjct: 436 LVDAGREIASVKDILSGAMP---GGNVPGVLGLAVIQQGLKVFSAIFKRIHRSLGMEFRK 492
Query: 319 LFRG 322
L+R
Sbjct: 493 LYRL 496
>gi|209544682|ref|YP_002276911.1| hypothetical protein Gdia_2553 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532359|gb|ACI52296.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 707
Score = 43.1 bits (100), Expect = 0.057, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 86/304 (28%), Gaps = 49/304 (16%)
Query: 48 DAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWK 107
+ V P I ++ +P ++ I + Y E + + E
Sbjct: 202 ETVDPLRLCIDYNAKSFAAAP--------RITEEIDL-YPWEVEEKIRAGLFLDDEYGCN 252
Query: 108 FPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGK---------------- 151
+ D + + E + D DGDG AE V +A +G+
Sbjct: 253 ---HDAGDDEDAPVTFLEQHRRYDLDGDGYAEPYIVTIARDSGRLARIVAGFESEGVIFG 309
Query: 152 ------DNILCNEEWNELPFTCLRAMRAPHC-FIGESLAASIIEIQKIKTVLLRQTLDNL 204
I + + PF + +P + + L Q D
Sbjct: 310 AADHRIRRIDAVAYYTKFPF-----IPSPDSAIYDIGFGTLLHPLNAAVNTSLNQMFDAA 364
Query: 205 YWQNQPQTIVQEGSIIDPESV-LNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHY 263
+ N + G ++ SV K + +++ + F +L +
Sbjct: 365 HLANAGGGFIGSGMSLNSGSVRFQIGEYKVVNTPGATLRENLVPMQFSGPNPVLFQLLGF 424
Query: 264 LDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQV-----ELIVRTLAQGLEI 318
L + + DI SG P L +V + I R+L
Sbjct: 425 LVDAGREIASVKDILSGAMP---GGNVPGVLGLAVIQQGLKVFSAIFKRIHRSLGMEFRK 481
Query: 319 LFRG 322
L+R
Sbjct: 482 LYRL 485
>gi|144899435|emb|CAM76299.1| head-to-tail joining protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 502
Score = 43.1 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 87/284 (30%), Gaps = 36/284 (12%)
Query: 46 CVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIEN- 104
AV + ++ S R+ LT + L + ++ P + + E+
Sbjct: 160 RFTAVPLAQAVLEEGPDGKLDSSF--RRSELTLAALRQR-FPAAQLD--PSLIRRGEEDP 214
Query: 105 TWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELP 164
+F + Y + D D A +L + + P
Sbjct: 215 QARFAVIEAVIPNQRGHYDYAA-ILEDATDDDEA---------------LLAEGRFGQSP 258
Query: 165 FTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPES 224
F R ++AP G S + K ++ L N + +++P +
Sbjct: 259 FINFRWLKAPGEIYGRSPVMKALPDIKTANKVVELVLKNATIAVTGIWQADDDGVLNPAN 318
Query: 225 VLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPE 284
+ G I A G + + S + S +L L + + +P+
Sbjct: 319 I-KLIPGTIIPKAVGSAG--LQPLESPGRFDISQLVLDDLRGRIRHALLADKLGQADNPK 375
Query: 285 ILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLII 328
+ TAT ++E+S R L L LL +I
Sbjct: 376 M------TATEVLERSADM-----ARLLGATYGRLQSELLTPLI 408
>gi|300362219|ref|ZP_07058396.1| leucine--tRNA ligase [Lactobacillus gasseri JV-V03]
gi|300354838|gb|EFJ70709.1| leucine--tRNA ligase [Lactobacillus gasseri JV-V03]
Length = 804
Score = 43.1 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVLGHDESITYAKWPTYDP 736
>gi|327184092|gb|AEA32539.1| leucyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
Length = 804
Score = 43.1 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQIFGHDESITYAKWPTYDP 736
>gi|325957385|ref|YP_004292797.1| leucyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
gi|325333950|gb|ADZ07858.1| leucyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
Length = 804
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|315038959|ref|YP_004032527.1| leucyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
gi|312277092|gb|ADQ59732.1| leucyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
Length = 804
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|169334552|ref|ZP_02861745.1| hypothetical protein ANASTE_00955 [Anaerofustis stercorihominis DSM
17244]
gi|169259269|gb|EDS73235.1| hypothetical protein ANASTE_00955 [Anaerofustis stercorihominis DSM
17244]
Length = 648
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 57/298 (19%), Positives = 117/298 (39%), Gaps = 32/298 (10%)
Query: 35 RIRRKYSQGKVCVDAVSPDEFL-IHPDSVDIEKSPIVGRKLYLTRSDLISM------GYD 87
+I +G + + +SP +F + + DIE ++ ++ +M GY+
Sbjct: 183 KINVAIKEGGINYEIISPFDFFPSNVYAKDIESLDYAIWYKVMSVKEIENMFNITVEGYE 242
Query: 88 RESIN------NLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELR 141
++ N+ + S+ + ++ D + E+I Y+E G I +
Sbjct: 243 NNVVSYSKSKTNVGGLGSKGHGYS---ESSKNIDLSAEVISYFEKPTNRYPKGRYIVCTK 299
Query: 142 R-VIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQT 200
V+ G N E ELPF +++ F GES+ +I +Q+ + +
Sbjct: 300 DNVLHMGDLPYINAEDGER--ELPFVIQKSLDY-GEFFGESIINRLIPLQRRFNNIKNRK 356
Query: 201 LDNLYWQNQPQTIVQEGSIIDPESVLN--PQFGKPIRVAAGMDIRSVLGIHSVP------ 252
+ L Q ++GSI D + V++ G I G + S L ++P
Sbjct: 357 QEYLNRVAIGQITYEKGSI-DEDDVIDMGLAPGAVIPRRQGSEEPSYLRTPALPSTILSD 415
Query: 253 --MIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSL-IEQSGVGQVEL 307
E+ F L + + + +++SG + +LQ+ T +L E ++++
Sbjct: 416 EKATEELFITLSGVSEMSRNSYNPKNVTSGVALSLLQDQDDTRLALNYENMYDTRIKI 473
>gi|238852506|ref|ZP_04642918.1| leucine--tRNA ligase [Lactobacillus gasseri 202-4]
gi|238834853|gb|EEQ27078.1| leucine--tRNA ligase [Lactobacillus gasseri 202-4]
Length = 804
Score = 42.7 bits (99), Expect = 0.073, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W +DP
Sbjct: 715 -----EIWQVFGHDESISYAKWPEYDP 736
>gi|282851118|ref|ZP_06260492.1| leucine--tRNA ligase [Lactobacillus gasseri 224-1]
gi|282558070|gb|EFB63658.1| leucine--tRNA ligase [Lactobacillus gasseri 224-1]
Length = 804
Score = 42.7 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W +DP
Sbjct: 715 -----EIWQVFGHDESISYAKWPEYDP 736
>gi|116629123|ref|YP_814295.1| leucyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
gi|311111095|ref|ZP_07712492.1| leucine--tRNA ligase [Lactobacillus gasseri MV-22]
gi|122273879|sp|Q045L5|SYL_LACGA RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|116094705|gb|ABJ59857.1| leucyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
gi|311066249|gb|EFQ46589.1| leucine--tRNA ligase [Lactobacillus gasseri MV-22]
Length = 804
Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W +DP
Sbjct: 715 -----EIWQVFGHDESISYAKWPEYDP 736
>gi|212696605|ref|ZP_03304733.1| hypothetical protein ANHYDRO_01145 [Anaerococcus hydrogenalis DSM
7454]
gi|212676336|gb|EEB35943.1| hypothetical protein ANHYDRO_01145 [Anaerococcus hydrogenalis DSM
7454]
Length = 2189
Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 29 EKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDR 88
+ V ++ I + V+A P+ F ++ +S +I++S + + + +L+ + ++
Sbjct: 1578 QDVENVVITKYRLYNNNKVEADMPESFGVNENSSNIKRSGYGVSRQSMDKGELLELPFEN 1637
Query: 89 ESINNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTID-YDG 134
I + K + ++ L+ YY + +D YDG
Sbjct: 1638 GMSPRDSYIVKVTGRVSGKDKSSYQAESVLQTYNYYSGKLFVDRYDG 1684
>gi|268319013|ref|YP_003292669.1| hypothetical protein FI9785_522 [Lactobacillus johnsonii FI9785]
gi|262397388|emb|CAX66402.1| leuS [Lactobacillus johnsonii FI9785]
Length = 804
Score = 42.7 bits (99), Expect = 0.085, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 75/205 (36%), Gaps = 40/205 (19%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + +G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSKGNVVNPDEVIDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FSP- 283
R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 597 RMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQEKIVDENDGELDKV 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQ 331
E L TA + ++ + + ++I R A+G L + +++
Sbjct: 657 YAETVKKVTEDFEALHFNTAISQMMVFMNAAQKAKIIPREYAEGFVQLLAPVAPHMME-- 714
Query: 332 DKVRMVRLRD--------QWVSFDP 348
+ + +W +DP
Sbjct: 715 ---EIWSVFGHDESIAYAKWPEYDP 736
>gi|227892921|ref|ZP_04010726.1| leucine--tRNA ligase [Lactobacillus ultunensis DSM 16047]
gi|227865259|gb|EEJ72680.1| leucine--tRNA ligase [Lactobacillus ultunensis DSM 16047]
Length = 804
Score = 42.7 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDDVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R A+G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFVNAAQKAKSIPREYAEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|312978116|ref|ZP_07789861.1| leucine--tRNA ligase [Lactobacillus crispatus CTV-05]
gi|310895091|gb|EFQ44160.1| leucine--tRNA ligase [Lactobacillus crispatus CTV-05]
Length = 804
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 76/205 (37%), Gaps = 40/205 (19%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + +G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSKGNVVNPDEVIDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FSP- 283
R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 597 RMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELDKV 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQ 331
E L TA + ++ + + + I R A+G L + +++
Sbjct: 657 YAETVKKVTEDFESLHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMME-- 714
Query: 332 DKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 ---EIWQVFGHDESITYAKWPTYDP 736
>gi|295693491|ref|YP_003602101.1| leucyl-tRNA synthetase [Lactobacillus crispatus ST1]
gi|295031597|emb|CBL51076.1| Leucyl-tRNA synthetase [Lactobacillus crispatus ST1]
Length = 804
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 76/205 (37%), Gaps = 40/205 (19%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + +G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSKGNVVNPDEVIDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FSP- 283
R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 597 RMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELDKV 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQ 331
E L TA + ++ + + + I R A+G L + +++
Sbjct: 657 YAETVKKVSEDFESLHFNTAISQMMVFMNAAQKAKTIPREYAEGFVKLLAPVAPHMME-- 714
Query: 332 DKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 ---EIWQVFGHDESITYAKWPTYDP 736
>gi|42518602|ref|NP_964532.1| leucyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
gi|81668177|sp|Q74KS1|SYL_LACJO RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|41582887|gb|AAS08498.1| leucyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
gi|329666886|gb|AEB92834.1| leucyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
Length = 804
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 74/205 (36%), Gaps = 40/205 (19%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + +G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSKGNVVNPDEVIDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FSP- 283
R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 597 RMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQEKIVDENDGELDKV 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQ 331
E L TA + ++ + + + I R A+G L + +++
Sbjct: 657 YAETVKKVTEDFEALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVQLLAPVAPHMME-- 714
Query: 332 DKVRMVRLRD--------QWVSFDP 348
+ + +W +DP
Sbjct: 715 ---EIWSVFGHDESIAYAKWPEYDP 736
>gi|227890482|ref|ZP_04008287.1| leucyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
gi|227849051|gb|EEJ59137.1| leucyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
Length = 804
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 74/205 (36%), Gaps = 40/205 (19%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + +G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSKGNVVNPDEVIDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FSP- 283
R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 597 RMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQEKIVDENDGELDKV 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQ 331
E L TA + ++ + + + I R A+G L + +++
Sbjct: 657 YAETVKKVTEDFEALHFNTAISQMMVFMNAAQKAKTIPREYAEGFVQLLAPVAPHMME-- 714
Query: 332 DKVRMVRLRD--------QWVSFDP 348
+ + +W +DP
Sbjct: 715 ---EIWSVFGHDESIAYAKWPEYDP 736
>gi|237736163|ref|ZP_04566644.1| D-ribose transporter ATP binding protein [Fusobacterium mortiferum
ATCC 9817]
gi|229421716|gb|EEO36763.1| D-ribose transporter ATP binding protein [Fusobacterium mortiferum
ATCC 9817]
Length = 498
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 48/294 (16%), Positives = 109/294 (37%), Gaps = 38/294 (12%)
Query: 14 SDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRK 73
+ ++ + E+ +++ R + V+ + + S + + I+G
Sbjct: 231 DEEFIIRNMVGRTLDEQFPRVKVERGKEI--LRVENLK--NSYVDGVSFSLHEGEILGIS 286
Query: 74 LYLT--RSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTID 131
+ RS+L+ Y ++ + E + A E IE YV+ D
Sbjct: 287 GLMGAGRSELVKTIYGHLKKDS-GKVFIDGEEKNIR--------SAKEGIECGIAYVSED 337
Query: 132 YDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQK 191
GDG +++ ++ L L F + H S+ I + +
Sbjct: 338 RKGDG------LVLGMSVKENMTLS-----ALNFFS-TLFKLEHKKEEASVEEYIGKF-R 384
Query: 192 IKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSV 251
+KT + Q + NL NQ + + + + +P+ ++ + + + V A +I +
Sbjct: 385 VKTPSMEQKIKNLSGGNQQKVAIAKALLTNPKILILDEPTRGVDVGAKKEIYDFI----N 440
Query: 252 PMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQV 305
+ K S++ + E+ + G+SD ++ N T L E++ ++
Sbjct: 441 DLKTKGLSII-MISSEMPEIMGLSDRIM-----VIHNGKVTGEFLAEEATQEKI 488
>gi|226227231|ref|YP_002761337.1| hypothetical protein GAU_1825 [Gemmatimonas aurantiaca T-27]
gi|226090422|dbj|BAH38867.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 799
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 7/192 (3%)
Query: 152 DNILCNEEWNELPFTCLRAMRAPHCF--IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQ 209
D EE +LP R P G S + + + L+ LY N
Sbjct: 374 DGEDEREEPLDLPVAQCRFFEDPADQDPYGLSPVEWLAPMDEAVATQTIAWLEYLYRFNH 433
Query: 210 PQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELV 269
P T + GS+I P + N + G PIR A I + P +S +++ + +
Sbjct: 434 PNTFLPLGSVIQPGQL-NIRDGTPIRYNAAAGKLEYESIPTFP--SESTALIDKYEAWMR 490
Query: 270 DRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+G+ + + G + + + I + + + +V + L R L+LI
Sbjct: 491 TLSGLENAARGVADPSV--KSGIHAERIIEQALVALTQVVSNVQDFLLRRGRIRLQLIAT 548
Query: 330 HQDKVRMVRLRD 341
H R++R+
Sbjct: 549 HYTAPRLLRING 560
>gi|319783517|ref|YP_004142993.1| hypothetical protein Mesci_3826 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169405|gb|ADV12943.1| hypothetical protein Mesci_3826 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 784
Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 44/317 (13%), Positives = 98/317 (30%), Gaps = 41/317 (12%)
Query: 39 KYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIIS 98
+ + ++ +AVS +F H + P + + ++R + +D I
Sbjct: 198 RLANERIEFEAVSWRDFR-HGPAKRWSDCPWLSFRFVVSREN-EDTAFDSAMI------G 249
Query: 99 SQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNE 158
Q + K +D I +V TG ++
Sbjct: 250 MQTSDQEKKARGESDNDLTGWEIWCKTS--------------LKVYFVDDTGVILKTVDD 295
Query: 159 EWNELPFTCLRAMRAPHCFIGE-------SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQ 211
F + P G S+ + + + + T + ++ + +
Sbjct: 296 PLGLTNFFPIATPVQPVELTGRLMPVNPFSIYSKLADELDLTTKRINIITNH--MKVKGW 353
Query: 212 TIVQEGSIIDPESVLNPQF-----GKPIRVAAGMDIRSVL-GIHSVPMI-EKSFSMLHYL 264
G I + + + +F G+ + ++ + ++
Sbjct: 354 FSGDAGDIANMLAADDTEFVPIGNADIWAANGGLAGAVAFWPVEKFILVLRELYNAREQT 413
Query: 265 DQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLL 324
Q + + TGISDI G S N T A + Q G +++ + R + +G LF +
Sbjct: 414 KQAIYEITGISDIVRGASK---SNETLGAQQIKTQWGSLRIQKMQRMMERGARDLFVMMS 470
Query: 325 RLIIQHQDKVRMVRLRD 341
+I + ++
Sbjct: 471 EIIPAKFSHETLQQMTG 487
>gi|169795385|ref|YP_001713178.1| putative phage related protein [Acinetobacter baumannii AYE]
gi|169148312|emb|CAM86177.1| conserved hypothetical protein; putative phage related protein
[Acinetobacter baumannii AYE]
Length = 547
Score = 40.8 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 3/131 (2%)
Query: 98 SSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAG---GTGKDNI 154
+ + D ++++ E T GD + + A + I
Sbjct: 192 GENKVSEKVRNTYKSKPDCKVKVLWVVEPRKTGYIKGDRQLMPKEMPFASYHVEVDEKII 251
Query: 155 LCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIV 214
L +NE PF R + PH G + + K L+R TL +
Sbjct: 252 LRETGYNEFPFVIPRFRKIPHSVYGTGQVSIALPDAKTANKLMRDTLRSAEISTLGMYAG 311
Query: 215 QEGSIIDPESV 225
+ +P +V
Sbjct: 312 VDDGTFNPRTV 322
>gi|296537022|ref|ZP_06899017.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
gi|296262651|gb|EFH09281.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
Length = 368
Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 8/184 (4%)
Query: 155 LCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIV 214
L + + PF R ++AP G + + ++ L N
Sbjct: 158 LAEGRFQDSPFIAFRWLKAPGEAYGRGPVMKALPDIRTANKVVELVLKNASIAATGIWQA 217
Query: 215 QEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGI 274
++ +++P +V G I A G + L +F + + +L R
Sbjct: 218 EDDGVLNPATV-RLVPGAIIPKAPGSSGLTPLAAPG------NFDVSQLVLDDLRGRIRA 270
Query: 275 SDISSGFSPEILQNMTATATSLIEQSGVGQV-ELIVRTLAQGLEILFRGLLRLIIQHQDK 333
+ ++ P MTAT + R A+ L L L ++ + +
Sbjct: 271 ALLADRLGPPGTAAMTATEVLERSAQTARLLGATYGRLQAELLTPLIGRCLSILRRRGEV 330
Query: 334 VRMV 337
++
Sbjct: 331 PPLL 334
>gi|228469904|ref|ZP_04054843.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
60-3]
gi|228308539|gb|EEK17327.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
60-3]
Length = 395
Score = 40.0 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 23/182 (12%)
Query: 28 GEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISMGYD 87
G ++D ++ ++ + D P I D I +G + R+ L G+
Sbjct: 227 GNTIYDKQMAKRCAIRTKVSDIFEPQS--IERDGFTISDRMWLGHQTRKKRNRLNGKGFG 284
Query: 88 RESINNLPIISSQNIENTWKFPKNQYSDKAL-----EMIEYYELYVTIDYDGDGIAELRR 142
+ +S WK D++ M+ E G + R
Sbjct: 285 YSKFTGNSVYTSTISARYWKDGSEILIDQSNRGLNPRMLTPVEA---------GRLQGYR 335
Query: 143 VIMAG---GTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIE--IQKIKTVLL 197
VI +G N+ NE ++ F + + + + G S+A +I+ Q+I L+
Sbjct: 336 VIGSGWEHTESASNLAYNE--SDPEFRIVVSKKEAYRQFGNSVAIPVIKRLSQEIIKQLI 393
Query: 198 RQ 199
RQ
Sbjct: 394 RQ 395
>gi|161507942|ref|YP_001577906.1| leucyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
gi|260103261|ref|ZP_05753498.1| leucine-tRNA ligase [Lactobacillus helveticus DSM 20075]
gi|229470715|sp|A8YWU4|SYL_LACH4 RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|160348931|gb|ABX27605.1| Leucyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
gi|260082930|gb|EEW67050.1| leucine-tRNA ligase [Lactobacillus helveticus DSM 20075]
gi|328464566|gb|EGF35935.1| leucyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
Length = 804
Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 73/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDEVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R +G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYVEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|323465976|gb|ADX69663.1| Leucyl-tRNA synthetase [Lactobacillus helveticus H10]
Length = 804
Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 73/207 (35%), Gaps = 38/207 (18%)
Query: 175 HCFIGESLAASIIEIQKIKTV--LLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGK 232
H + ++ + T R L +N + +G++++P+ V++
Sbjct: 535 HLLYARFWHKVLYDLGVVPTKEPFQRLYNQGLILKNHEKMSKSKGNVVNPDEVIDEYGAD 594
Query: 233 PIRV--------AAGMDIRSVLGIHSVPMIEKSFSM-LHYLDQELVDRTGISDISSG-FS 282
+R+ A +D + +++ + + ++ LD + + + I D + G
Sbjct: 595 SLRMYEMFMGPLDASIDWDDNGPASTKKFLDRVWRLFVNDLDLKAIPQERIVDKNDGELD 654
Query: 283 P-------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
+ L TA + ++ + + + I R +G L + +++
Sbjct: 655 KVYAETVKKVTEDFDALHFNTAISQMMVFINAAQKAKTIPREYVEGFVKLLAPVAPHMME 714
Query: 330 HQDKVRMVRLRD--------QWVSFDP 348
+ ++ +W ++DP
Sbjct: 715 -----EIWQVFGHDESITYAKWPTYDP 736
>gi|145642402|ref|ZP_01797960.1| Haemophilus-specific protein, uncharacterized [Haemophilus
influenzae R3021]
gi|145272901|gb|EDK12789.1| Haemophilus-specific protein, uncharacterized [Haemophilus
influenzae 22.4-21]
Length = 313
Score = 39.7 bits (91), Expect = 0.73, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 10/168 (5%)
Query: 143 VIMAGGTGKDNI-LCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTL 201
++MAG ++ L + E P++ C G + + Q+I R +
Sbjct: 27 IVMAGNGKILSVNLNPLDTAEFPYSVYTCEPDVCCLFGFGIPYLCRDAQEILNTAWRGMI 86
Query: 202 DNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV------AAGMDIRSVLGIHSVPMIE 255
DN PQ +V + + K + A + + GI + +
Sbjct: 87 DNGILGIGPQAVVNSSVLTPVDGNWELAPYKLWKTNDRATANAQFEAQRAFGIFDIGSRQ 146
Query: 256 KSFSMLHYL-DQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGV 302
+ + + L + + +G+ I+ G ++ T S++ +
Sbjct: 147 QELANIIQLSKSFMDEESGLPMIAQGEQGQVTP--TLGGMSMLMNAAN 192
>gi|254720050|ref|ZP_05181861.1| hypothetical protein Bru83_11004 [Brucella sp. 83/13]
gi|265985058|ref|ZP_06097793.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839398|ref|ZP_07472212.1| Hypothetical protein BROD_2254 [Brucella sp. NF 2653]
gi|264663650|gb|EEZ33911.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405521|gb|EFM61786.1| Hypothetical protein BROD_2254 [Brucella sp. NF 2653]
Length = 678
Score = 39.3 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 100/306 (32%), Gaps = 49/306 (16%)
Query: 60 DSVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALE 119
+ + P + + Y+ R DL D E ++ + ++ + DK +
Sbjct: 230 KAKRWKDVPWIAFRHYMPREDLEDF-RDAELYSSQAQPTDSADDDEDDIQVWEIWDKRTK 288
Query: 120 MIEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIG 179
+ + ID + +G+ + + F + P G
Sbjct: 289 QVWF------IDAN---------------SGRVQKISEDPLGLPGFFPTPEIVQPITLTG 327
Query: 180 E-------SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLN----- 227
++ + + + T + + L + + GS D + + +
Sbjct: 328 NMTPVCPFTVYKKLADELDLCTKRINAIMKGLKVR-----GIILGSAEDIKRLADAGDNE 382
Query: 228 ----PQFGKPIRVAAGMDIRSVLGIH-SVPMIEKSFSMLHYLDQELVDRTGISDISSGFS 282
+ ++ A + I ++ ++++ + + + + TGISDI G S
Sbjct: 383 LIPVSDVEQIVQTAGLEKAIAWWPIQQAIAVLQQLYQQRGEIKAAIYEITGISDIVRGAS 442
Query: 283 PEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQ 342
N T A + Q G +++ + R + + + +F + +II + +
Sbjct: 443 N---ANETLGAQQIKTQWGSLRIQKMQRMIERLVRDIFGMMADIIITKFSPETLQEMTG- 498
Query: 343 WVSFDP 348
+ P
Sbjct: 499 -IEITP 503
>gi|13473479|ref|NP_105046.1| hypothetical protein mll4092 [Mesorhizobium loti MAFF303099]
gi|14024228|dbj|BAB50832.1| mll4092 [Mesorhizobium loti MAFF303099]
Length = 477
Score = 39.3 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 183 AASIIEIQKIKTVLLRQTLDNLYWQNQPQT---IVQEGSIIDPESVLNPQFGKPIRVAAG 239
I ++Q + + LDN N P+ IV ++ + + F + A G
Sbjct: 170 TDKIGDLQAAASTAVENLLDNNIDPNNPRVRVAIVPYAEAVNTGGLADSVF---VEQAGG 226
Query: 240 MDIRSVLGIHSVPMIEKSFSML--HYLDQELVDRTGISDISS 279
++ + P+ S L E D+ G +D SS
Sbjct: 227 SNLPPPVPSAGAPIPVGSSVTLRPDKCATERKDKDGYADYSS 268
>gi|117924319|ref|YP_864936.1| hypothetical protein Mmc1_1012 [Magnetococcus sp. MC-1]
gi|117608075|gb|ABK43530.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 671
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 262 HYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFR 321
+ + + TGISDI G S TATA S+ Q G +++ + + + LFR
Sbjct: 388 ESIKSVIYEITGISDIVRGVSKAS---ETATAQSIKSQWGGRRLQERQSQVQRFVRDLFR 444
Query: 322 GLLRLIIQHQDKVRMVRLRDQ 342
+ ++++H + ++
Sbjct: 445 MVGEIMVEHFQPQTIAKMVGA 465
>gi|317152045|ref|YP_004120093.1| Bacteriophage head-to-tail connecting protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316942296|gb|ADU61347.1| Bacteriophage head-to-tail connecting protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 603
Score = 39.3 bits (90), Expect = 0.95, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 15/228 (6%)
Query: 107 KFPKNQYSDKALEMIEY-YELYVTIDYD--GDGIAELRRVIMAGGTGKDNILCNEEWNEL 163
+ + ++ + +E + ++ D D G G A + TG +++L + E+
Sbjct: 197 GETRRKAEERPDDTVEILHAVFPRTDRDPYGVGAAHFPFASVYVETGAEHVLEESGYLEM 256
Query: 164 PFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPE 223
P+ R +A G + + ++ + R L + P +V + + P
Sbjct: 257 PYLVPRWAKAAGETYGRGPGQTALSDTRVLNAMARTALMAAEKMSDPPLMVPDDGFLGP- 315
Query: 224 SVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSP 283
++ G AG R + + + + +M+ +E + R + D + P
Sbjct: 316 --VHSGPGGLSYYRAGSPDR-IEPLPVNVDLAATETMMQQ-RRESIRRIFLGDQLTPEGP 371
Query: 284 EILQNMTATATSLIEQSGVGQV--ELIVRTLAQGLEILFRGLLRLIIQ 329
+TAT +LI QS +V ++ R A+ L L R + R++++
Sbjct: 372 ----AVTAT-EALIRQSEKMRVLGPVLGRLQAEFLSPLIRRVFRIMLR 414
>gi|300811526|ref|ZP_07092017.1| leucine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497493|gb|EFK32524.1| leucine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 804
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 65/178 (36%), Gaps = 27/178 (15%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSRGNVVNPDDVVDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLDQELVDRTGISDISSG-FSP- 283
R A +D +++ + + ++ LD + + I+D + G
Sbjct: 597 RTYEMFMGPLNASIDWDDNGPSGVKKFLDRVWRTFVNDLDLDPIPSEKITDKNDGKLDKI 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
E L TA + ++ + +V+ I R A+G L + +++
Sbjct: 657 YNETVKTVTEHFEELHFNTAISQMMVFMNACQKVDKIPREYAEGFVKLMAPVAPHMME 714
>gi|13186164|emb|CAC33475.1| hypothetical protein [Legionella pneumophila]
Length = 519
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 26/233 (11%)
Query: 25 EDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPDSVDIEKSPIVGRKLYLTRSDLISM 84
+D + I + V +AV P + + D+ + R Y R + I
Sbjct: 160 QDVLISTGIIAINEGNRKRPVRYEAVPPAQVMFQGDAEGQVDAIF--RDWYQVRIENIKS 217
Query: 85 GYDRESINNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVI 144
+ + + L + K + ++ +E IDY+ E R
Sbjct: 218 MWPKAEVAKL-------------------NKKPEDKVDIWEC-AWIDYEA---PEKERYQ 254
Query: 145 MAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNL 204
T ++L + + P+ R R G + S L L
Sbjct: 255 YVVMTSSKDVLLEQSNSSWPWVVYRMRRLTGEIRGRGPSLSAYPTAATINQALEDELVAA 314
Query: 205 YWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGMDIRSVLGIHSVPMIEKS 257
+Q P + S + ++ P+ G + V + I+ +
Sbjct: 315 AFQANPMYMAASDSAFNQQTF-TPRPGSIVPVQMVQGEWPIKPFEQSGNIQFN 366
>gi|313124236|ref|YP_004034495.1| leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280799|gb|ADQ61518.1| Leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|325685746|gb|EGD27823.1| leucine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 804
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSRGNVVNPDDVIDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLDQELVDRTGISDISSG-FSP- 283
R A +D +++ + + ++ LD + + I+D + G
Sbjct: 597 RTYEMFMGPLNASIDWDDNGPSGVKKFLDRVWRTFVNDLDLDPIPSEKITDKNDGKLDKI 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
E L+ TA + ++ + +V+ I R A+G L + +++
Sbjct: 657 YNETVKTVTEHFEELRFNTAISQMMVFMNACQKVDKIPREYAEGFVKLMAPVAPHMME 714
>gi|325126199|gb|ADY85529.1| Leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 804
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSRGNVVNPDDVVDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLDQELVDRTGISDISSG-FSP- 283
R A +D +++ + + ++ LD + + I+D + G
Sbjct: 597 RTYEMFMGPLNASIDWDDNGPSGVKKFLDRVWRTFVNDLDLDPIPSEKITDKNDGKLDKI 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
E L+ TA + ++ + +V+ I R A+G L + +++
Sbjct: 657 YNETVKTVTEHFEELRFNTAISQMMVFMNACQKVDKIPREYAEGFVKLMAPVAPHMME 714
>gi|104774389|ref|YP_619369.1| leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|123251849|sp|Q1G971|SYL_LACDA RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|103423470|emb|CAI98369.1| Leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 804
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSRGNVVNPDDVVDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLDQELVDRTGISDISSG-FSP- 283
R A +D +++ + + ++ LD + + I+D + G
Sbjct: 597 RTYEMFMGPLNASIDWDDNGPSGVKKFLDRVWRTFVNDLDLDPIPSEKITDKNDGKLDKI 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
E L+ TA + ++ + +V+ I R A+G L + +++
Sbjct: 657 YNETVKTVTEHFEELRFNTAISQMMVFMNACQKVDKIPREYAEGFVKLMAPVAPHMME 714
>gi|116514487|ref|YP_813393.1| leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|122274781|sp|Q049B7|SYL_LACDB RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|116093802|gb|ABJ58955.1| leucyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
Length = 804
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 176 CFIGESLAAS-IIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
F + L ++ ++ L Q L +N + G++++P+ V++ +
Sbjct: 540 RFWHKVLYDLGVVPTKEPFQKLYNQ---GLILKNHEKMSKSRGNVVNPDDVVDEYGADSL 596
Query: 235 RV--------AAGMDIRSVLGIHSVPMIEKSF-SMLHYLDQELVDRTGISDISSG-FSP- 283
R A +D +++ + + ++ LD + + I+D + G
Sbjct: 597 RTYEMFMGPLNASIDWDDNGPSGVKKFLDRVWRTFVNDLDLDPIPSEKITDKNDGKLDKI 656
Query: 284 ------------EILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQ 329
E L+ TA + ++ + +V+ I R A+G L + +++
Sbjct: 657 YNETVKTVTEHFEELRFNTAISQMMVFMNACQKVDKIPREYAEGFVKLMAPVAPHMME 714
>gi|147919964|ref|YP_686282.1| hypothetical protein RCIX1747 [uncultured methanogenic archaeon
RC-I]
gi|110621678|emb|CAJ36956.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length = 326
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 17/158 (10%)
Query: 92 NNLPIISSQNIENTWKFPKNQYSDKALEMIEYYELYVTIDYDGDGIAELRRVIMAG---- 147
+ + IS++ E + ++ + Y+ D D + ++RV+ AG
Sbjct: 83 DRIGFISTRIKEIELMTTYDPATNTG--EVAVNICYIPKDRFEDALGAIKRVVNAGYAIS 140
Query: 148 ------GTGKDNILCNEEWNELPFTCLRAMRAPHCFIGESL-----AASIIEIQKIKTVL 196
G++ + + + F + ++ + + I+ IQ +
Sbjct: 141 PRIKIVDEGEEILENDVPLGSVAFASVCSITLDGVLLKNGIPVNLKYGGILWIQNGEVQR 200
Query: 197 LRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPI 234
+D P ++ + + G +
Sbjct: 201 FTDVIDYSGTSINPMSVFTSRKMTSVNKAIETGTGGVL 238
>gi|262043663|ref|ZP_06016772.1| hypothetical protein HMPREF0484_3791 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039001|gb|EEW40163.1| hypothetical protein HMPREF0484_3791 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 554
Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 10/171 (5%)
Query: 164 PFTCLRAMRAPHCFIGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPE 223
P+ R AP G S A ++ K+ + R ++ +P ++ E I+ P
Sbjct: 260 PYAISRYYTAPGEVYGRSPAMVVLPDIKLLNEINRAIIEGAQMAVRPPMLLPEDGILQPF 319
Query: 224 SVL--NPQFGKPIRVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGF 281
++ FG R + L +++ + ++ Q + D I+
Sbjct: 320 KMMPGALNFGGMNRDGKPL----ALPLNTATDFSVAMTLAEQKRQTINDGFFITLFQILV 375
Query: 282 SPEILQNMTATATSLIEQSGVGQVELIVRTLAQGLEILFRGLLRLIIQHQD 332
+ A + + G R A+ L L L + I +Q+
Sbjct: 376 DNPQMTATEAMLRAQ--EKGQLLAPTAGRIQAEFLGTL--ILREIDIAYQN 422
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.134 0.337
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,674,760,390
Number of Sequences: 14124377
Number of extensions: 213239232
Number of successful extensions: 550808
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 550503
Number of HSP's gapped (non-prelim): 169
length of query: 350
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 210
effective length of database: 2,865,380,850
effective search space: 601729978500
effective search space used: 601729978500
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 82 (36.2 bits)