RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781145|ref|YP_003065558.1| hypothetical protein
CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
         (350 letters)



>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris
           suum) [TaxId: 6253]}
          Length = 147

 Score = 27.2 bits (60), Expect = 2.2
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 175 HCFIGESLAASII--EIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNP 228
             FI +     +   +  +++T   +        +NQP +       + P   L+P
Sbjct: 84  KLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQQENQPPSSGMPHGAV-PAGGLSP 138


>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
          domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 282

 Score = 26.9 bits (59), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 47 VDAVSPDEFLIHPDSVDIEKSPIVGRK 73
          + A   D FL H   +DI+ +PI  R 
Sbjct: 6  LHAAMADTFLEHKCRLDIDSAPITARN 32


>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
           {Soybean (Glycine max) [TaxId: 3847]}
          Length = 182

 Score = 25.4 bits (54), Expect = 8.0
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 119 EMIEYYELYVTIDYDGDG---IAELRRVIMAGGTGKDNILCNEEWNELPFTC 167
           E+    EL+  ID D  G     EL+  +   G+        +  +      
Sbjct: 8   EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK 59


>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 126

 Score = 25.0 bits (55), Expect = 8.3
 Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 121 IEYYELYVTIDY---DGDGIAELR 141
           +E+Y  +V ++Y     + I E  
Sbjct: 1   VEWYLDFVDLNYEPGRDELIVEYY 24


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 24.9 bits (54), Expect = 9.9
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 18/78 (23%)

Query: 176 CFIG-ESLAASIIEIQKIKTVLL---------RQTLDNL--YWQNQPQTIV------QEG 217
             +  +S + S   + K   V              L  +   W+N PQ I          
Sbjct: 72  LHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRT 131

Query: 218 SIIDPESVLNPQFGKPIR 235
            I+D  +V N  F   + 
Sbjct: 132 QIVDCAAVANWIFSSELS 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,358,520
Number of extensions: 65511
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 12
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)