BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781145|ref|YP_003065558.1| hypothetical protein
CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62]
(350 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/350 (100%), Positives = 350/350 (100%)
Query: 1 MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD 60
MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD
Sbjct: 1 MALNYFIHMLIKDSDVEVLEHSHREDGGEKVHDLRIRRKYSQGKVCVDAVSPDEFLIHPD 60
Query: 61 SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120
SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM
Sbjct: 61 SVDIEKSPIVGRKLYLTRSDLISMGYDRESINNLPIISSQNIENTWKFPKNQYSDKALEM 120
Query: 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE 180
IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE
Sbjct: 121 IEYYELYVTIDYDGDGIAELRRVIMAGGTGKDNILCNEEWNELPFTCLRAMRAPHCFIGE 180
Query: 181 SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM 240
SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM
Sbjct: 181 SLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRVAAGM 240
Query: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS
Sbjct: 241 DIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDISSGFSPEILQNMTATATSLIEQS 300
Query: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY
Sbjct: 301 GVGQVELIVRTLAQGLEILFRGLLRLIIQHQDKVRMVRLRDQWVSFDPRY 350
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 28.9 bits (63), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 209 QPQTIVQEGSIIDPESVLNP--QFGKPIRVAAGMDIRS---VLGIHSVPMIEKSFSM 260
P +V+EG++I P S++ P G + + AG+++ S V G + K F M
Sbjct: 11 HPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPM 67
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 210 PQTIVQEGSIIDPESVLNPQF---GKPIRVAAGMDIRSVLG 247
P TIV+ + I P++VL P F G I + +D S +G
Sbjct: 113 PGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVG 153
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 225 VLNPQFGKPI------RVAAGMDIRSVLGIHSVPMIEKSFSMLHYLDQELVDRTGISDIS 278
+NP+ GK + RV+ + S + I ++ + LD+ D TG
Sbjct: 340 AVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITG-GKTP 398
Query: 279 SGFSPEILQNMT------------ATATSLIEQSGVGQVELIVRTLAQGLEILFRGL 323
+ F P I +T + T VG+V I RT A+ L+ RGL
Sbjct: 399 ASFEPSIDYIVTKIPRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGL 455
>gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 23.5 bits (49), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 178 IGESLAASIIEIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSI 219
IG ++++++KI + + R LD + Q I+ GS+
Sbjct: 173 IGTGRVPAVVDLEKIHSFVRRILLDRFPEEGQKMRILYGGSV 214
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 23.5 bits (49), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 188 EIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236
+I + ++ ++ + Q++ TI PES + G+P+RV
Sbjct: 378 DIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV 426
>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
[Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 23.5 bits (49), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 46 CVDAVSPDEFLIHPDSVDIEKSPIVG 71
C D ++ L +P V+IEK+ ++G
Sbjct: 172 CFDKIAKSLGLPYPGGVEIEKAALMG 197
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 23.1 bits (48), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 281 FSPEILQNMTATATSLIEQSGV 302
FSP+++QN T S++ G+
Sbjct: 327 FSPKVMQNNACTLKSVLSDFGI 348
>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 23.1 bits (48), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 180 ESLAASIIEIQKIKTVLLRQTLDNLY 205
ESL+++ IE++ K +LR++L +Y
Sbjct: 8 ESLSSNSIEVRSQKLNMLRKSLAEVY 33
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,420
Number of Sequences: 1233
Number of extensions: 9864
Number of successful extensions: 28
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 13
length of query: 350
length of database: 328,796
effective HSP length: 75
effective length of query: 275
effective length of database: 236,321
effective search space: 64988275
effective search space used: 64988275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)