Query gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 33803
Date Wed Jun 1 22:44:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781146.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3fxd_A Protein ICMQ; helix bu 68.4 4.2 0.00012 22.3 2.8 20 79-98 3-22 (57)
2 >2gl7_C B-cell lymphoma 9 prot 46.5 14 0.0004 18.9 2.3 20 77-96 1-20 (46)
3 >2j9w_A VPS28, VPS28-PROV prot 36.7 34 0.001 16.2 3.3 27 77-103 73-99 (102)
4 >2j9u_A VPS28, vacuolar protei 36.6 34 0.001 16.2 3.1 26 77-102 68-93 (96)
5 >2gsv_A Hypothetical protein Y 34.0 34 0.001 16.2 2.8 54 34-101 10-67 (80)
6 >1jei_A Emerin; membrane prote 28.8 24 0.00071 17.3 1.2 27 77-103 2-28 (53)
7 >2hmc_A AGR_L_411P, dihydrodip 27.7 31 0.00092 16.5 1.7 53 45-101 21-88 (109)
8 >1rsg_A FMS1 protein; FAD bind 20.7 64 0.0019 14.4 3.4 33 15-47 41-75 (246)
9 >3c9i_A Tail needle protein GP 20.6 65 0.0019 14.4 2.5 15 85-99 65-79 (84)
10 >3id6_A NOP5, PRE mRNA splicin 20.3 66 0.0019 14.3 5.5 73 29-101 37-148 (165)
No 1
>>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila str} PDB: 3fxe_A (A:)
Probab=68.38 E-value=4.2 Score=22.35 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 01688999999998899888
Q gi|254781146|r 79 DQLTDEQLCEIIRSLEKELQ 98 (122)
Q Consensus 79 D~LSDEQl~erIRaLd~aiR 98 (122)
|.||+||.-++..+||-||.
T Consensus 3 d~l~~eq~~aIlkaLdeaIe 22 (57)
T 3fxd_A 3 DQLSDEQKETILKALNDAIE 22 (57)
T ss_dssp -CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 05329999999999999998
No 2
>>2gl7_C B-cell lymphoma 9 protein; protein complex, armadillo repeat, transcription; 2.60A {Homo sapiens} (C:)
Probab=46.50 E-value=14 Score=18.91 Aligned_cols=20 Identities=45% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 41016889999999988998
Q gi|254781146|r 77 NGDQLTDEQLCEIIRSLEKE 96 (122)
Q Consensus 77 ~~D~LSDEQl~erIRaLd~a 96 (122)
|-|+||.|||-.|-|+|.+-
T Consensus 1 n~~glsqeqlehrerslqtl 20 (46)
T 2gl7_C 1 NPDGLSQEQLEHRERSLQTL 20 (46)
T ss_dssp -----CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 93302189999999999999
No 3
>>2j9w_A VPS28, VPS28-PROV protein; MVB, CHMP, ESCRT, NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} (A:)
Probab=36.67 E-value=34 Score=16.22 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 410168899999999889988887311
Q gi|254781146|r 77 NGDQLTDEQLCEIIRSLEKELQIFTDF 103 (122)
Q Consensus 77 ~~D~LSDEQl~erIRaLd~aiRpf~~~ 103 (122)
-.|+|++||.++-+--||+|-.-|...
T Consensus 73 AsdeL~e~q~RqllfDle~aY~~F~~~ 99 (102)
T 2j9w_A 73 ASDELDDSQVRQMLFDLESAYNAFNRF 99 (102)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 020059999999999999999999998
No 4
>>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; MVB, zinc, CHMP, ESCRT, membrane, transport, NZF finger, HIV budding, zinc-finger; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=36.63 E-value=34 Score=16.21 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 41016889999999988998888731
Q gi|254781146|r 77 NGDQLTDEQLCEIIRSLEKELQIFTD 102 (122)
Q Consensus 77 ~~D~LSDEQl~erIRaLd~aiRpf~~ 102 (122)
-.|+|++||.++-.--||+|-.-|..
T Consensus 68 AsdeL~e~q~Rq~lfDle~aY~~F~~ 93 (96)
T 2j9u_A 68 IGDTLTETQIRELLFDLELAYKSFYA 93 (96)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 03105999999999999999999999
No 5
>>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} (A:)
Probab=33.97 E-value=34 Score=16.22 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHCCHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf 43689985599999997448---79999999997461455542454410168-8999999998899888873
Q gi|254781146|r 34 LTDDFSKYGRKVIKNLREEK---PEQYLRLISQILPREKIKQDGITNGDQLT-DEQLCEIIRSLEKELQIFT 101 (122)
Q Consensus 34 l~dDF~~hG~~vIarvReeK---PeqYLKlVaSiLPkdl~~~~gin~~D~LS-DEQl~erIRaLd~aiRpf~ 101 (122)
+-++|++|-.- +--|+| -..|.|.|+|-|-.| +|+ .--++-|||-||.|-+-.-
T Consensus 10 fi~Nf~~hi~m---n~~edkIhAmNaYYrsVvstlvqD-----------qltKNavvlkRiqHLdEAY~KVk 67 (80)
T 2gsv_A 10 FIENLKQHIEX---NQSEDKIHAXNSYYRSVVSTLVQD-----------QLTKNAVVLKRIQHLDEAYNKVK 67 (80)
T ss_dssp HHHHHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHHC-----------SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999982---911889999999999999999999-----------99730799999999999999998
No 6
>>1jei_A Emerin; membrane protein; NMR {Synthetic} (A:)
Probab=28.80 E-value=24 Score=17.27 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 410168899999999889988887311
Q gi|254781146|r 77 NGDQLTDEQLCEIIRSLEKELQIFTDF 103 (122)
Q Consensus 77 ~~D~LSDEQl~erIRaLd~aiRpf~~~ 103 (122)
+++.|||++|+...+.+.-.--|.++.
T Consensus 2 d~~~LSd~ELr~~L~~~G~~~GPIt~t 28 (53)
T 1jei_A 2 NYADLSDTELTTLLRRYNIPHGPVVGS 28 (53)
T ss_dssp CTTTCCHHHHHHHHSSSCCSCCCCCSG
T ss_pred CHHHHCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 265616899999999929998880061
No 7
>>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:236-344)
Probab=27.66 E-value=31 Score=16.48 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHCHHHHHHHHHH---------------HCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999974487999999999---------------74614555424544101688999999998899888873
Q gi|254781146|r 45 VIKNLREEKPEQYLRLISQ---------------ILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFT 101 (122)
Q Consensus 45 vIarvReeKPeqYLKlVaS---------------iLPkdl~~~~gin~~D~LSDEQl~erIRaLd~aiRpf~ 101 (122)
+-||.|+..-|.-|-|.+| +|--|.-..-..|.-|.|||-|-. -.|+-.+-|-
T Consensus 21 ~~Ar~~A~ELe~Al~VLSsFDEG~DLVLyyKhlmVL~G~~EY~lHFNetD~Ls~sQr~----y~E~Q~~lF~ 88 (109)
T 2hmc_A 21 ADARARALELEQALAVLSSFDEGPDLVLYFKYXXVLKGDKEYTLHFNETDALTDSQRG----YVEAQFKLFN 88 (109)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGSTTHHHHHHHHHHHTTCGGGSCCSSTTCCCCHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHH
T ss_conf 9999999999999889876015987999999999807998999799999879999999----9999999999
No 8
>>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* (A:95-179,A:285-445)
Probab=20.72 E-value=64 Score=14.37 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.1
Q ss_pred HHHHHCHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 12320125668999999--9743689985599999
Q gi|254781146|r 15 CINRLSHKEISLQYLYQ--SVLTDDFSKYGRKVIK 47 (122)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~l~dDF~~hG~~vIa 47 (122)
-..-+|-+|+..+|+++ .+||||=++|++.++-
T Consensus 41 ~~~d~s~~~~~~~y~~~~~~~lt~~q~~~~~~~~r 75 (246)
T 1rsg_A 41 GVSDCSFFQLVXKYLLQRRQFLTNDQIRYLPQLCR 75 (246)
T ss_dssp ---CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 64310488999999986402355389998665544
No 9
>>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A (A:159-242)
Probab=20.60 E-value=65 Score=14.36 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999988998888
Q gi|254781146|r 85 QLCEIIRSLEKELQI 99 (122)
Q Consensus 85 Ql~erIRaLd~aiRp 99 (122)
+-+.||.+||.|+|-
T Consensus 65 ~~RqRikALEdalR~ 79 (84)
T 3c9i_A 65 TERRRTKAMEDALRA 79 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 10
>>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} (A:104-268)
Probab=20.29 E-value=66 Score=14.31 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=41.4
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHH-------------HCHHHHHHHHHHHC---------------CHHHHH----HHCC
Q ss_conf 99997-436899855999999974-------------48799999999974---------------614555----4245
Q gi|254781146|r 29 LYQSV-LTDDFSKYGRKVIKNLRE-------------EKPEQYLRLISQIL---------------PREKIK----QDGI 75 (122)
Q Consensus 29 ~~~~~-l~dDF~~hG~~vIarvRe-------------eKPeqYLKlVaSiL---------------Pkdl~~----~~gi 75 (122)
+-|++ +-|+.-.-=-.+..++|| ..|.+|.|+|.-+- |.+... +...
T Consensus 37 Iiq~~~lld~id~ein~~~~rirewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~~~l~~~~l~~~~~~~i~~~a~~ 116 (165)
T 3id6_A 37 AIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKK 116 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999999999964776861898726899999999994884568765687646999999999999875
Q ss_pred CCCCCCCHHHH------HHHHHHHHHHHHHHH
Q ss_conf 44101688999------999998899888873
Q gi|254781146|r 76 TNGDQLTDEQL------CEIIRSLEKELQIFT 101 (122)
Q Consensus 76 n~~D~LSDEQl------~erIRaLd~aiRpf~ 101 (122)
+-+-+|+++.+ |+++-.|...-+-+.
T Consensus 117 S~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~ 148 (165)
T 3id6_A 117 SIGADISEDDLSAMRMIANTILDLYNIRRNLN 148 (165)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79995999999999999999999999999999
Done!