Query gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 122 No_of_seqs 9 out of 11 Neff 1.6 Searched_HMMs 13730 Date Wed Jun 1 11:33:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781146.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2gsva1 a.23.7.1 (A:3-69) Hypo 34.0 14 0.001 16.2 2.8 52 34-99 8-63 (67) 2 d1veha_ d.52.8.1 (A:) HIRA-int 32.0 7.9 0.00057 17.9 1.2 22 81-102 9-31 (92) 3 d2j9ua1 a.24.28.1 (A:148-241) 31.4 17 0.0012 15.7 3.3 28 75-102 65-92 (94) 4 d2bbya_ a.4.5.15 (A:) DNA-bind 22.5 19 0.0014 15.4 1.7 32 32-63 11-44 (69) 5 d1gjja2 a.140.1.1 (A:111-153) 20.4 17 0.0012 15.7 1.2 25 77-101 1-25 (43) 6 d1rbli_ d.73.1.1 (I:) Ribulose 17.0 32 0.0023 13.8 2.1 29 65-94 5-33 (109) 7 d2csba4 a.60.2.4 (A:465-519) T 14.3 31 0.0023 13.9 1.3 12 78-89 40-51 (55) 8 d1sdia_ a.198.1.1 (A:) Hypothe 13.5 32 0.0023 13.8 1.2 65 38-111 123-188 (213) 9 d1r6ja_ b.36.1.1 (A:) Syntenin 13.0 28 0.0021 14.1 0.8 45 45-93 26-70 (82) 10 d1svdm1 d.73.1.1 (M:3-110) Rib 12.8 41 0.003 13.1 2.1 14 80-93 19-32 (108) No 1 >d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]} Probab=34.02 E-value=14 Score=16.23 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHCCHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHH Q ss_conf 43689985599999997448---79999999997461455542454410168-89999999988998888 Q gi|254781146|r 34 LTDDFSKYGRKVIKNLREEK---PEQYLRLISQILPREKIKQDGITNGDQLT-DEQLCEIIRSLEKELQI 99 (122) Q Consensus 34 l~dDF~~hG~~vIarvReeK---PeqYLKlVaSiLPkdl~~~~gin~~D~LS-DEQl~erIRaLd~aiRp 99 (122) +-++|++|-.--- -|+| -..|.|.|+|-|-.| +|+ .--++-|||-||.|-+- T Consensus 8 fi~Nf~~~i~mn~---~~dkIhAmNaYYrsVvstlvqD-----------qltKNa~vlkRiqHLdEAY~K 63 (67) T d2gsva1 8 FIENLKQHIEMNQ---SEDKIHAMNSYYRSVVSTLVQD-----------QLTKNAVVLKRIQHLDEAYNK 63 (67) T ss_dssp HHHHHHHHHHHCS---SSCHHHHHHHHHHHHHHHHHHC-----------SSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH T ss_conf 9998999998291---0889999999999999999999-----------997418999999999999998 No 2 >d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=32.01 E-value=7.9 Score=17.87 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=17.9 Q ss_pred CCHHHHHHHHHH-HHHHHHHHHC Q ss_conf 688999999998-8998888731 Q gi|254781146|r 81 LTDEQLCEIIRS-LEKELQIFTD 102 (122) Q Consensus 81 LSDEQl~erIRa-Ld~aiRpf~~ 102 (122) =+|++++.+|+. ||..|||++. T Consensus 9 ~~d~e~~~~I~~vL~~~IrP~l~ 31 (92) T d1veha_ 9 EEDDEVVAMIKELLDTRIRPTVQ 31 (92) T ss_dssp SSCCHHHHHHHHHHHHTTHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCHHHH T ss_conf 76189999999999974075899 No 3 >d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=31.41 E-value=17 Score=15.66 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=23.3 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 5441016889999999988998888731 Q gi|254781146|r 75 ITNGDQLTDEQLCEIIRSLEKELQIFTD 102 (122) Q Consensus 75 in~~D~LSDEQl~erIRaLd~aiRpf~~ 102 (122) ..-.|+|++||.++-+--||++-.-|.. T Consensus 65 M~AsdeL~e~q~Rq~lfDle~aY~~F~~ 92 (94) T d2j9ua1 65 LSIGDTLTETQIRELLFDLELAYKSFYA 92 (94) T ss_dssp SCTTCBCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8525204999999999999999999997 No 4 >d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]} Probab=22.50 E-value=19 Score=15.37 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHH Q ss_conf 974368998559999999744--87999999999 Q gi|254781146|r 32 SVLTDDFSKYGRKVIKNLREE--KPEQYLRLISQ 63 (122) Q Consensus 32 ~~l~dDF~~hG~~vIarvRee--KPeqYLKlVaS 63 (122) ..|..-|++|--=.|..++++ .|++|||-|.. T Consensus 11 d~lF~~Fek~~ywsiK~L~~~t~QP~~yLKeiL~ 44 (69) T d2bbya_ 11 DMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 44 (69) T ss_dssp HHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHH T ss_conf 9999998646787899999998193999999999 No 5 >d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.41 E-value=17 Score=15.66 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=16.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 4101688999999998899888873 Q gi|254781146|r 77 NGDQLTDEQLCEIIRSLEKELQIFT 101 (122) Q Consensus 77 ~~D~LSDEQl~erIRaLd~aiRpf~ 101 (122) ++++|||++|+...+.+.-.--|.+ T Consensus 1 d~~~Lsd~eLr~~L~~~G~~~GPIt 25 (43) T d1gjja2 1 DVTELTNEDLLDQLVKYGVNPGPIV 25 (43) T ss_dssp CCEEECHHHHHHEEEBTTCCCCCCC T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCC T ss_conf 9625489999999998599999948 No 6 >d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]} Probab=17.00 E-value=32 Score=13.83 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=17.0 Q ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 461455542454410168899999999889 Q gi|254781146|r 65 LPREKIKQDGITNGDQLTDEQLCEIIRSLE 94 (122) Q Consensus 65 LPkdl~~~~gin~~D~LSDEQl~erIRaLd 94 (122) +|+++-+.+= --+-+||||||..-|+.|= T Consensus 5 ~p~~~~~eTf-SyLP~Ltd~~I~~QV~yll 33 (109) T d1rbli_ 5 LPKERRFETF-SYLPPLSDRQIAAQIEYMI 33 (109) T ss_dssp CCCCCCCSTT-TTSSCCCHHHHHHHHHHHH T ss_pred CCCCCCCCCC-CCCCCCCHHHHHHHHHHHH T ss_conf 6887531311-2589999999999999998 No 7 >d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]} Probab=14.31 E-value=31 Score=13.88 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=9.4 Q ss_pred CCCCCHHHHHHH Q ss_conf 101688999999 Q gi|254781146|r 78 GDQLTDEQLCEI 89 (122) Q Consensus 78 ~D~LSDEQl~er 89 (122) -|+|+|.||+|- T Consensus 40 edgltdaqirel 51 (55) T d2csba4 40 EDGLTDAQIREL 51 (55) T ss_dssp HTTCCHHHHHHH T ss_pred HCCCCHHHHHHH T ss_conf 856638999986 No 8 >d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]} Probab=13.53 E-value=32 Score=13.77 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=42.2 Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHH-HHHHHHHHCCHHHHCCHH Q ss_conf 99855999999974487999999999746145554245441016889999999988-998888731101111113 Q gi|254781146|r 38 FSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSL-EKELQIFTDFKNKDAHSR 111 (122) Q Consensus 38 F~~hG~~vIarvReeKPeqYLKlVaSiLPkdl~~~~gin~~D~LSDEQl~erIRaL-d~aiRpf~~~k~r~~~~R 111 (122) |.-.-..+|+++ -+-|...|+.+=||= .+.++ ..-|.+++.-++||+| =+.||--.=.+ ..||.| T Consensus 123 f~~~~~~via~l----a~iY~dtIS~l~pRI---~V~G~-~~~L~~~~~a~kIRALLLAGIRaavLWr-Q~GG~R 188 (213) T d1sdia_ 123 FDLQSETLMSAM----AAIYVDVISPLGPRI---QVTGS-PAVLQSPQVQAKVRATLLAGIRAAVLWH-QVGGGR 188 (213) T ss_dssp SCTTSHHHHHHH----HHHHHHHTGGGSSCC---CCCSC-HHHHTCHHHHHHHHHHHHHHHHHHHHHH-HTTCCH T ss_pred CCCCCHHHHHHH----HHHHHHHHHCCCCCE---EEECC-HHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCH T ss_conf 574659999999----999999743369807---88487-8882695269999999999999999999-928960 No 9 >d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=13.03 E-value=28 Score=14.15 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=34.9 Q ss_pred HHHHHHHHCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 9999974487999999999746145554245441016889999999988 Q gi|254781146|r 45 VIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSL 93 (122) Q Consensus 45 vIarvReeKPeqYLKlVaSiLPkdl~~~~gin~~D~LSDEQl~erIRaL 93 (122) .|..|.+..|-.. +-+.|-|.+..++..++..++.+|..+.|+.- T Consensus 26 ~V~~v~~g~~A~~----~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~ 70 (82) T d1r6ja_ 26 KITSIVKDSSAAR----NGLLTEHNICEINGQNVIGLKDSQIADILSTS 70 (82) T ss_dssp EEEEECTTSHHHH----HTCCSSEEEEEETTEECTTCCHHHHHHHHHHS T ss_pred EEEEECCCCHHHH----CCCCCCCEEEEECCEEEEECCHHHHHHHHHCC T ss_conf 8879888995785----47689999999699688518999999999729 No 10 >d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]} Probab=12.81 E-value=41 Score=13.09 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 16889999999988 Q gi|254781146|r 80 QLTDEQLCEIIRSL 93 (122) Q Consensus 80 ~LSDEQl~erIRaL 93 (122) +||||||..-|+.| T Consensus 19 ~Ltde~I~~QV~yl 32 (108) T d1svdm1 19 PMNAERIRAQIKYA 32 (108) T ss_dssp CCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 99999999999999 Done!