BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781146|ref|YP_003065559.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040823|gb|ACT57619.1| hypothetical protein CLIBASIA_05265 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60
MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL
Sbjct: 1 MSPLTLLPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRL 60
Query: 61 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA
Sbjct: 61 ISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
Query: 121 SS 122
SS
Sbjct: 121 SS 122
>gi|150397046|ref|YP_001327513.1| hypothetical protein Smed_1843 [Sinorhizobium medicae WSM419]
gi|150028561|gb|ABR60678.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 126
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 37 DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96
DF+++G V+ +REEKPE YL+L+S ILP++ G D+L+DEQL E I++L+
Sbjct: 46 DFAQHGVGVLARIREEKPETYLKLVSSILPKDLSAATGC--ADELSDEQLIERIQALDAA 103
Query: 97 LQIFTDFKNKDAHSRE 112
++ K + R+
Sbjct: 104 IRPLISGKKRAGGMRK 119
>gi|15965773|ref|NP_386126.1| hypothetical protein SMc04191 [Sinorhizobium meliloti 1021]
gi|307311307|ref|ZP_07590950.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307318840|ref|ZP_07598272.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15075042|emb|CAC46599.1| Hypothetical protein SMc04191 [Sinorhizobium meliloti 1021]
gi|306895561|gb|EFN26315.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306899608|gb|EFN30236.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 120
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 37 DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96
DF+++G VI +REEKPE YL+L++ +LP++ G D L+DEQ+ + IR+L+
Sbjct: 40 DFARHGVNVIARIREEKPEAYLKLVASVLPKDLSAATG--GVDDLSDEQIIDRIRALDAA 97
Query: 97 LQIFTDFKNKDAHSRE 112
++ + + R+
Sbjct: 98 IRPLLSLRKRAGGLRK 113
>gi|315122537|ref|YP_004063026.1| hypothetical protein CKC_03945 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495939|gb|ADR52538.1| hypothetical protein CKC_03945 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 117
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 71/106 (66%), Positives = 87/106 (82%)
Query: 12 KYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIK 71
KY N+L H++ISLQ LY++VL DFSK+GRKV+KNLR+EKPEQYLRLI+QILP+E IK
Sbjct: 12 KYSEKNQLFHQDISLQRLYKNVLIKDFSKHGRKVVKNLRKEKPEQYLRLIAQILPKENIK 71
Query: 72 QDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETT 117
++ NGD LTDEQLCEIIRSLEKELQ+ TD KN+D + K+TT
Sbjct: 72 EEETINGDPLTDEQLCEIIRSLEKELQLVTDSKNQDVCPTKVKKTT 117
>gi|227821701|ref|YP_002825671.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234]
gi|227340700|gb|ACP24918.1| hypothetical protein NGR_c11330 [Sinorhizobium fredii NGR234]
Length = 125
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 34 LTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSL 93
+ DF ++G I +REEKP+QYL++I+ ILP++ I N D LTD+QL E IRSL
Sbjct: 42 MHADFEQHGVAAIVRVREEKPDQYLKVIASILPKDL--NVNINNMDDLTDDQLIERIRSL 99
Query: 94 EKELQIFTDFKNKDAHSRET-KETT 117
+ ++ F D + T ETT
Sbjct: 100 DSAIRPFLDAQGASGSVGGTGPETT 124
>gi|227822453|ref|YP_002826425.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234]
gi|227341454|gb|ACP25672.1| hypothetical protein NGR_c19080 [Sinorhizobium fredii NGR234]
Length = 151
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 37 DFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKE 96
DF+ +G VI +R EKPE YL+L++ +LP++ G T D+L+D+QL E IR+L+
Sbjct: 70 DFAAHGVGVIARIRAEKPETYLKLVASLLPKDLNAAAGGT--DELSDDQLIERIRALDSA 127
Query: 97 LQIFTDFKN 105
++ + +
Sbjct: 128 IRPLFNARK 136
>gi|260463787|ref|ZP_05811984.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259030384|gb|EEW31663.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 131
Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89
+ + + DF +G VI +R +KP+QYL+++ +LP++ I D L+DE++
Sbjct: 44 FLAAVRADFRTHGAGVIAEVRADKPDQYLKIVLSVLPKD--FDVSINQLDGLSDEEIRSR 101
Query: 90 IRSLEKELQIFTD 102
IR+LE L+ F +
Sbjct: 102 IRALETALRPFLE 114
>gi|13471715|ref|NP_103282.1| hypothetical protein mll1773 [Mesorhizobium loti MAFF303099]
gi|14022459|dbj|BAB49068.1| mll1773 [Mesorhizobium loti MAFF303099]
Length = 130
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89
+ + + DF +G VI +R +KP+QYL+++ +LPR+ I + D L+DE++
Sbjct: 43 FLAAVRADFRAHGAGVIAEVRADKPDQYLKIVLSVLPRD--FDVAINHLDALSDEEIRSR 100
Query: 90 IRSLEKELQIFTD 102
IR LE L+ F +
Sbjct: 101 IRGLETVLRPFLE 113
>gi|158422461|ref|YP_001523753.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571]
gi|158329350|dbj|BAF86835.1| putative bacteriophage protein [Azorhizobium caulinodans ORS 571]
Length = 220
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 30 YQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEI 89
+ + L DDF + G + I+ +REEKP+QYL++++ ILP+E + L+D++L
Sbjct: 133 FIAALHDDFIENGPETIQRVREEKPDQYLKVVASILPKELKVTTEV----DLSDDELDRR 188
Query: 90 IRSLEKEL 97
IR L L
Sbjct: 189 IRQLAAAL 196
>gi|298292906|ref|YP_003694845.1| bacteriophage protein [Starkeya novella DSM 506]
gi|296929417|gb|ADH90226.1| putative bacteriophage protein [Starkeya novella DSM 506]
Length = 106
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 32 SVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
S L +F ++ VI +RE KPE YL++++ +LPRE + +L+D +L +I
Sbjct: 28 SDLYINFRQHEPSVIAKVRETKPEVYLKVVASLLPREVKLDA--PDLRELSDAELMAVI 84
>gi|148557329|ref|YP_001264911.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1]
gi|148502519|gb|ABQ70773.1| hypothetical protein Swit_4435 [Sphingomonas wittichii RW1]
Length = 99
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 34 LTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIR 91
L ++++G I+ +R E+P YLRL++ L + + + L+D+++ + +R
Sbjct: 29 LQASWARHGAATIEQVRNERPHDYLRLMASSLAK--RAEGKSDAIEALSDDEIADELR 84
>gi|302308347|ref|NP_985233.2| AER377Cp [Ashbya gossypii ATCC 10895]
gi|299789411|gb|AAS53057.2| AER377Cp [Ashbya gossypii ATCC 10895]
Length = 1012
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 19 LSHKEISL--QYLYQSVLTDDFSK------YGRKVIKN-LREEKPEQYLRLISQILPREK 69
L H+E S+ QYL +++LTDD G KVI + E L+ I ++LP
Sbjct: 488 LKHEERSMVIQYLTETILTDDNKNIYIACLEGLKVISRNYEADVHEVSLKRILELLPESA 547
Query: 70 IKQDGITNGDQLTDEQLCEII 90
+ I NG++ + + + ++I
Sbjct: 548 SAETVIVNGEETSVKHILKVI 568
>gi|126338697|ref|XP_001363409.1| PREDICTED: similar to dynamin 1-like, isoform 2 [Monodelphis
domestica]
Length = 712
Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
+RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+
Sbjct: 485 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 544
Query: 69 KIKQDGITNGDQ 80
K+ G GD
Sbjct: 545 KVAPAGSGVGDG 556
>gi|126338699|ref|XP_001363490.1| PREDICTED: similar to dynamin 1-like, isoform 3 [Monodelphis
domestica]
Length = 699
Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPRE 68
+RK+ P N + H ++++ Y + DF+ + N+ E++ + R ++ +PR+
Sbjct: 472 LRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELTSTVPRD 531
Query: 69 KIKQDGITNGDQ 80
K+ G GD
Sbjct: 532 KVAPAGSGVGDG 543
>gi|300778872|ref|ZP_07088730.1| metallo-beta-lactamase superfamily protein [Chryseobacterium
gleum ATCC 35910]
gi|300504382|gb|EFK35522.1| metallo-beta-lactamase superfamily protein [Chryseobacterium
gleum ATCC 35910]
Length = 473
Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 8 PIRKKYPCINRLSHKEISLQYLYQSVLTDDF 38
P+R+ P INRL E+ L+Y++++ DF
Sbjct: 29 PLRETQPYINRLKEDEVELKYIFETHFHADF 59
>gi|325963726|ref|YP_004241632.1| condensin subunit Smc [Arthrobacter phenanthrenivorans Sphe3]
gi|323469813|gb|ADX73498.1| condensin subunit Smc [Arthrobacter phenanthrenivorans Sphe3]
Length = 1194
Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 24 ISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQY--LRLISQILPREKIKQDGITNGDQL 81
+SLQY+ QSV D +++ R + + RE++ + +R +++L RE + D+L
Sbjct: 852 LSLQYVDQSV---DLARHERDLAEENREKRDQALAEIRTANELLARELADLTDNVHRDEL 908
Query: 82 TDEQLCEIIRSLE 94
Q I +LE
Sbjct: 909 ARAQQQARIEALE 921
>gi|294674640|ref|YP_003575256.1| ABC transporter permease [Prevotella ruminicola 23]
gi|294474339|gb|ADE83728.1| ABC transporter, permease protein [Prevotella ruminicola 23]
Length = 806
Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 57 YLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRE 112
Y+RL I P + Q D L ++L + L+ L+ D+ +D +R
Sbjct: 241 YVRLAEGITPDDLKAQIAKMRRDNLPADELKKAGVDLDYSLRPLADYHTQDDATRR 296
>gi|240275770|gb|EER39283.1| RecQ family helicase MusN [Ajellomyces capsulatus H143]
Length = 1559
Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 31 QSVLTDDFSKYGRKVIKNLREEK-------PEQYLRLISQILPREKIKQDGITNGD---- 79
QS++ D+F Y + ++ +K P+ LR ++ LPR+K + I N D
Sbjct: 1306 QSIIVDEFMFYAKNTCHDIMMKKSLRNQPFPDAILREMAISLPRDKSQLLKIPNIDPDKV 1365
Query: 80 QLTDEQLCEIIRSLEKELQIFTDFKNKDA 108
+Q +IR E Q +++D
Sbjct: 1366 DRYGDQFLRLIRRAEDRYQELLAERDRDG 1394
>gi|325093139|gb|EGC46449.1| RecQ family helicase MusN [Ajellomyces capsulatus H88]
Length = 1559
Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 31 QSVLTDDFSKYGRKVIKNLREEK-------PEQYLRLISQILPREKIKQDGITNGD---- 79
QS++ D+F Y + ++ +K P+ LR ++ LPR+K + I N D
Sbjct: 1306 QSIIVDEFMFYAKNTCHDIMMKKSLRNQPFPDAILREMAISLPRDKSQLLKIPNIDPDKV 1365
Query: 80 QLTDEQLCEIIRSLEKELQIFTDFKNKDA 108
+Q +IR E Q +++D
Sbjct: 1366 DRYGDQFLRLIRRAEDRYQELLAERDRDG 1394
>gi|225563190|gb|EEH11469.1| RecQ family helicase MusN [Ajellomyces capsulatus G186AR]
Length = 1559
Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 31 QSVLTDDFSKYGRKVIKNLREEK-------PEQYLRLISQILPREKIKQDGITNGD---- 79
QS++ D+F Y + ++ +K P+ LR ++ LPR+K + I N D
Sbjct: 1306 QSIIVDEFMFYAKNTCHDIMMKKSLRNQPFPDAILREMAISLPRDKSQLLKIPNIDPDKV 1365
Query: 80 QLTDEQLCEIIRSLEKELQIFTDFKNKDA 108
+Q +IR E Q +++D
Sbjct: 1366 DRYGDQFLRLIRRAEDRYQELLAERDRDG 1394
>gi|315611813|ref|ZP_07886733.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
gi|315316095|gb|EFU64127.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
Length = 538
Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 31 QSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
Q D +YG VI L + Y L+S+ +P+ K + L E L I
Sbjct: 44 QGAAYDSGKQYGMNVITPLLKGAI-MYTELVSEAVPKLPSKYRSEVGDEDLDSEVLESEI 102
Query: 91 RSLEKELQIFTDFKNKDAHSRETKETTKSASS 122
RSLE L N T +T S+ S
Sbjct: 103 RSLEASLHSIRGMYNAMVGDESTNASTLSSLS 134
>gi|156740746|ref|YP_001430875.1| nucleotidyl transferase [Roseiflexus castenholzii DSM 13941]
gi|156232074|gb|ABU56857.1| Nucleotidyl transferase [Roseiflexus castenholzii DSM 13941]
Length = 354
Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 13 YPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQ 72
+P ++R+ + +Y ++ + +G ++ LR + P + L
Sbjct: 189 WPALDRIQRSPVKGEYYLTDLVALAIADHGIGAVQALRADDPSETL-------------- 234
Query: 73 DGITNGDQLTDEQLCEIIRSLEKELQ 98
G+ + QL + +R L+ ++
Sbjct: 235 -GVNDRVQLAQAEHVLRLRLLDALMR 259
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.131 0.347
Lambda K H
0.267 0.0409 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 909,527,935
Number of Sequences: 14124377
Number of extensions: 28894446
Number of successful extensions: 82984
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 82962
Number of HSP's gapped (non-prelim): 25
length of query: 122
length of database: 4,842,793,630
effective HSP length: 89
effective length of query: 33
effective length of database: 3,585,724,077
effective search space: 118328894541
effective search space used: 118328894541
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)