RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>gnl|CDD|150154 pfam09385, HisK_N, Histidine kinase N terminal. This domain is
found at the N terminal of sensor histidine kinase
proteins.
Length = 133
Score = 28.9 bits (65), Expect = 0.36
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 11 KKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKN-----------LREEKPEQYLR 59
K+ C HKE L+ + ++ + Y ++++N L EE E+Y++
Sbjct: 5 KQKLCTFLKEHKEKFLENWKKKMVIAEDDPYKEEIVQNGEALLELFIEALLEELSEEYIQ 64
Query: 60 LISQILPREKIKQD 73
+++ + +E+ + D
Sbjct: 65 RLAEKIAKERAEAD 78
>gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 27.9 bits (62), Expect = 0.75
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKI 70
LQ+ +S+ T YGR++ KN RE + +LRL S L R
Sbjct: 312 LQFHPESIAT----CYGRQIFKNFREITQDYWLRLRSTSLRRRNS 352
>gnl|CDD|166513 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 27.5 bits (61), Expect = 0.80
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLRE----EKPEQYLRLISQILP 66
+L++L+Q + F+ Y + KNL+ P L LI + LP
Sbjct: 282 NLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLP 327
>gnl|CDD|162647 TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleotidase. These
enzymes are members of the haloacid dehalogenase (HAD)
superfamily of hydrolases, specifically the IA subfamily
(variant 3, TIGR01509).
Length = 184
Score = 26.6 bits (59), Expect = 1.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 54 PEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTD 102
++YLR + LP EK+K D +L ++ L IFT+
Sbjct: 67 ADEYLRYVHGRLPYEKLKP----------DPELRNLLLRLPGRKIIFTN 105
>gnl|CDD|132308 TIGR03264, met_CoM_red_C, methyl-coenzyme M reductase I operon
protein C. has several modified sites, so accessory
proteins are expected. Several methanogens have encode
two such enzymes, designated I and II; this protein
occurs only operons of type I. The precise function is
unknown.
Length = 194
Score = 25.5 bits (56), Expect = 3.3
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 36 DDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEK 95
+DF+K G K + + +P+ ++ + G+ G+ E++ EIIR ++
Sbjct: 142 EDFAKIGVKT-RAVMPLEPKTKGTVVEIV--------TGVIRGESCPQEKIDEIIRKVKT 192
Query: 96 EL 97
L
Sbjct: 193 HL 194
>gnl|CDD|181210 PRK08053, PRK08053, sulfur carrier protein ThiS; Provisional.
Length = 66
Score = 25.0 bits (55), Expect = 4.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 49 LREEKPEQYLRLISQILPREKIKQDGITNGDQL 81
L + +P L + QI+PRE+ Q + +GDQ+
Sbjct: 25 LNQLQPGAALAINQQIIPREQWAQHIVQDGDQI 57
>gnl|CDD|184869 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional.
Length = 659
Score = 25.2 bits (55), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 43 RKVIKNLREEKPEQYLRLISQILPREKI 70
++V N RE+ P +YLR IS P KI
Sbjct: 178 KEVTYNRREQGPFEYLRRISLSTPHAKI 205
>gnl|CDD|117046 pfam08469, NPHI_C, Nucleoside triphosphatase I C-terminal. This
viral domain is found to the C-terminus of Poxvirus
nucleoside triphosphatase phosphohydrolase I (NPH I)
together with the helicase conserved C-terminal domain
(pfam00271).
Length = 148
Score = 25.0 bits (55), Expect = 5.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 76 TNGDQLTDEQLCEIIRSLEKEL-QIFTDFK 104
+NG DE L +II+ KE Q+F K
Sbjct: 21 SNGRPSVDEDLLDIIKDKSKEFNQLFKVLK 50
>gnl|CDD|161791 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the
model.
Length = 328
Score = 24.7 bits (54), Expect = 6.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 77 NGDQLTDEQLCEIIRSLEKELQIFTD 102
N + ++DE++ E I+ L +E F +
Sbjct: 265 NAEDVSDEEILEAIKLLAREEGYFVE 290
>gnl|CDD|180239 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.
Length = 177
Score = 24.7 bits (55), Expect = 6.4
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 32 SVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGD-----QLTDEQL 86
+ + S+Y + +K L E L I + + + + I + + L++EQL
Sbjct: 63 AAVFKSLSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQL 122
Query: 87 CEIIRSLEKEL 97
++ +LEK L
Sbjct: 123 DKLKAALEKRL 133
>gnl|CDD|148181 pfam06421, LepA_C, GTP-binding protein LepA C-terminus. This
family consists of the C-terminal region of several
pro- and eukaryotic GTP-binding LepA proteins.
Length = 108
Score = 24.1 bits (53), Expect = 9.1
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 36 DDFSKYGRKVIKNLREEKPEQYLRLI------SQILPREKIKQ 72
D GR++++ L+E P Q + S+I+ RE IK
Sbjct: 16 DKAYNRGRELVEKLKELIPRQQFEIPIQAAIGSKIIARETIKA 58
>gnl|CDD|180189 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 24.0 bits (53), Expect = 9.2
Identities = 13/71 (18%), Positives = 35/71 (49%)
Query: 26 LQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQ 85
+ L +++L G +++++LR+ E+ L+ + E+I ++ I ++ +
Sbjct: 475 FRALLEAILAQPGLTTGSQLLEHLRDAGLEELAALLESLAVWEEISEEDIAALEKELKDA 534
Query: 86 LCEIIRSLEKE 96
L ++ L +E
Sbjct: 535 LEKLRDQLLEE 545
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.132 0.362
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,895,918
Number of extensions: 111023
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 37
Length of query: 122
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,222,617
Effective search space: 168904680
Effective search space used: 168904680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.5 bits)