RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP-
binding, diabetes mellitus, disease mutation,
glycolysis, nucleotide-binding, polymorphism; HET: GLC
MRK; 1.50A {Homo sapiens} PDB: 1v4s_A* 3a0i_X* 3fr0_A*
3goi_A* 3imx_A* 3h1v_X* 1v4t_A* (A:1-71,A:210-447)
Length = 309
Score = 27.2 bits (60), Expect = 0.91
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 55 EQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKEL 97
+ L Q + +EK++Q I QL +E L +++R ++KE+
Sbjct: 6 HHHENLYFQGMKKEKVEQ--ILAEFQLQEEDLKKVMRRMQKEM 46
>2pff_A Fatty acid synthase subunit alpha,
3-oxoacyl-[acyl-carrier-; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 26.8 bits (59), Expect = 1.0
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 24/78 (30%)
Query: 2 SPLTLLPI--RKKYPCIN-RLSH----KEISLQYLYQSVLTDDFSKYGRKVIKNLREEKP 54
SP L + RK+ + R + E L+ L + E
Sbjct: 21 SPN--LNMKYRKR--QLVTREAQIKDWVENELEALKLEAEE-------------IPSEDQ 63
Query: 55 EQYLRLISQILPREKIKQ 72
++L ++ + E Q
Sbjct: 64 NEFLLERTREIHNEAESQ 81
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown
function; 1.49A {Bacillus anthracis} (A:)
Length = 136
Score = 26.6 bits (59), Expect = 1.2
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 11 KKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKN-----------LREEKPEQYLR 59
K C +E + + V+ + Y ++IKN L+EE Q +
Sbjct: 5 KCLLCRYLKERQEKFISDWKKKVIIRERDPYKEEIIKNGEHLLSAFIMYLKEEISLQEIE 64
Query: 60 LISQILPREKIKQD 73
+ S+ + RE+I
Sbjct: 65 ITSKKIARERIDAK 78
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis,
amino-acid biosynthesis, homoserine transacetylase,
homoserine transsuccinylase; 2.00A {Bacillus cereus}
PDB: 2ghr_A (A:)
Length = 301
Score = 26.4 bits (57), Expect = 1.3
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 15 CINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDG 74
+ +++ + +Y R K L + P+ Y + P EK
Sbjct: 221 LVIGQEGRQVFALGHSEYSCDTLKQEYERDRDKGLNIDVPKNYFK---HDNPNEKPLVRW 277
Query: 75 ITNGDQL 81
++G+ L
Sbjct: 278 RSHGNLL 284
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.9 bits (57), Expect = 2.2
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 78 GDQLTDEQLCEII--RSL 93
D ++ E L E++ R +
Sbjct: 3 ADVMSIESLVEVVFYRGM 20
>1cza_N Hexokinase type I; structurally homologous domains; HET:
GLC G6P ADP; 1.90A {Homo sapiens} (N:478-519,N:658-895)
Length = 280
Score = 25.7 bits (56), Expect = 2.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 80 QLTDEQLCEIIRSLEKEL 97
LT + L E+ + + E+
Sbjct: 1 HLTKDMLLEVKKRMRAEM 18
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR
2TH; 1.60A {Oryctolagus cuniculus} (A:480-799)
Length = 320
Score = 25.3 bits (54), Expect = 2.8
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 13/54 (24%)
Query: 67 REKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFKNKDAHSRETKETTKSA 120
E+I ++ I++ DQL ++L + D + + K+ K
Sbjct: 14 AERIGEEYISDLDQL-------------RKLLSYVDDEAFIRDVAKVKQENKLK 54
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase,
assemble; 2.50A {Escherichia coli} (A:1-50,A:179-235)
Length = 107
Score = 25.4 bits (56), Expect = 3.0
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 60 LISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDFK 104
+ Q +K+ + TNG +E + L ++L+ F D +
Sbjct: 63 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 107
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} (A:88-318)
Length = 231
Score = 24.9 bits (52), Expect = 3.6
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 59 RLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIFTDF 103
+ + P + Q + D+ +E + ++ + +F DF
Sbjct: 187 NIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGEDPYADLFRDF 231
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural
genomics, PSI-2, protein structure initiative; 1.99A
{Bacillus licheniformis} (A:1-13,A:178-347)
Length = 183
Score = 24.7 bits (54), Expect = 4.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 30 YQSVLTDDFSKYGRKVIKNLREEK 53
Y +LT D S G ++K+L +E+
Sbjct: 63 YDLILTGDLSGVGSPILKDLLKEE 86
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis,
F1-ATPase, spectroscopy; NMR {Escherichia coli} (A:)
Length = 134
Score = 24.4 bits (53), Expect = 5.2
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 32 SVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGD-----QLTDEQL 86
+V + + G+ +I+ + E L + + + + D L+++QL
Sbjct: 62 AVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQL 121
Query: 87 CEIIRSLEKEL 97
+I ++EK L
Sbjct: 122 AKISAAMEKRL 132
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A
{Bacillus subtilis} (A:)
Length = 81
Score = 24.6 bits (54), Expect = 5.4
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 46 IKNLREEKPEQY-LRLI--SQILPREKIKQD-GITNGDQL 81
+++ E + +R++ ++ E D GITNGD+L
Sbjct: 39 AQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRL 78
>1cza_N Hexokinase type I; structurally homologous domains; HET:
GLC G6P ADP; 1.90A {Homo sapiens} (N:1-72,N:210-447)
Length = 310
Score = 24.5 bits (53), Expect = 5.4
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 67 REKIKQDGITNGDQLTDEQLCEIIRSLEKELQ 98
+KI + +L+DE L +I+ KE++
Sbjct: 19 VKKIDK--YLYAMRLSDETLIDIMTRFRKEMK 48
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous
recombination, holliday junction resolving enzyme,
nuclease, archaea; 1.8A {Sulfolobus solfataricus} (A:)
Length = 135
Score = 23.7 bits (51), Expect = 8.4
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 36 DDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEK 95
++ K ++ L + ++ + I IK + L E+ +II +++
Sbjct: 58 ENKVKVKEHQVRKLLDFLSMFTMKGVPLI----AIKFKQVHEWRVLVPEKAEDIIVTIDN 113
Query: 96 ELQ 98
+
Sbjct: 114 SIP 116
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase,
oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces
coelicolor} (A:163-245)
Length = 83
Score = 23.6 bits (51), Expect = 9.6
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 36 DDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSL 93
+ ++I R + + S ++ +D +GD+L+ E+L + + +
Sbjct: 27 ARLYEVLDQLIAAKRATPGDD---MTSLLIAA----RDDEGDGDRLSPEELRDTLLLM 77
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.315 0.132 0.362
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 835,937
Number of extensions: 35681
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 35
Length of query: 122
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 49
Effective length of database: 2,488,284
Effective search space: 121925916
Effective search space used: 121925916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.1 bits)