RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781146|ref|YP_003065559.1| hypothetical protein
CLIBASIA_05265 [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.9 bits (98), Expect = 4e-05
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 41/127 (32%)
Query: 1 MSPLTLLPIRKKYPCINRLSHKEI--SL-----QYLYQSVLTDDFSKYGRKVIKNLRE-- 51
M + P+ LSH + L + S L + F K L E
Sbjct: 1 MDAYSTRPLT--------LSHGSLEHVLLVPTASFFIASQLQEQF-------NKILPEPT 45
Query: 52 ------EKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQIF-TDF- 103
++P L+ + L G + + ++ + + L L F +
Sbjct: 46 EGFAADDEPTTPAELVGKFL--------GYVS-SLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 104 KNKDAHS 110
+ D H+
Sbjct: 97 EGNDIHA 103
Score = 28.4 bits (63), Expect = 0.46
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 46 IKNLREEKPEQYLRLISQILPREKIKQDGIT--NGDQ 80
I NL +E+ + Y+ + LP KQ I+ NG +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAG--KQVEISLVNGAK 375
Score = 25.7 bits (56), Expect = 2.7
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 9 IRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNL--REEKPEQ-YLRL---IS 62
I+ ++ L + + ++ G +++ L P++ YL L IS
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFT---------QGLNILEWLENPSNTPDKDYL-LSIPIS 237
Query: 63 QILPREKIKQDGITNGDQLTDEQLCEIIRSLEK---ELQIFTDFKNKDAHS 110
P I G+ QL + L EL+ + K HS
Sbjct: 238 --CPL--I---GVI---QLA--HYVVTAKLLGFTPGELR--SYLKGATGHS 274
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 31.5 bits (71), Expect = 0.045
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 43 RKVIKNLREEKPEQYLRLISQILPREKI--------KQDGITNGDQLTDEQLCEIIRSL- 93
R+ I + + E+ ++ +KI G T+ T E L + +
Sbjct: 23 REEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMG 82
Query: 94 --EKELQIFTDFKNKDA 108
E + D ++
Sbjct: 83 FEEYINPVIVDERDIYK 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.9 bits (58), Expect = 1.3
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 84 EQLCEIIRSLEKELQIFTDFKNKD-AHSRETKETTK 118
E+ + ++ L+ L+++ D D A + K T +
Sbjct: 18 EK--QALKKLQASLKLYAD----DSAPALAIKATME 47
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium
leguminosarum BV} PDB: 2qlx_A*
Length = 144
Score = 26.8 bits (59), Expect = 1.5
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 49 LREEKPEQYLRLISQILP--REKIKQDGITN 77
L +Y + +I P + + Q G ++
Sbjct: 50 LNPGMEAEYRKRHDEIWPELVDLLHQSGASD 80
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal
binding protein, structural genomics, NPPSFA; 2.21A
{Pyrococcus horikoshii}
Length = 342
Score = 26.6 bits (58), Expect = 1.6
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 45 VIKNLREEKPEQYLRLISQILPREKIKQDGITNG---DQLTD------EQLCEIIRSLEK 95
++K PE+Y +LI + P + + G ++LT + + E +L K
Sbjct: 245 LVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVK 304
Query: 96 ELQIFTDFKNKDAHSR 111
L + +++ SR
Sbjct: 305 HLPGY-HIEDEYEPSR 319
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding
protein; 2.20A {Bovine immunodeficiency virus R29} PDB:
3kkr_A
Length = 152
Score = 25.1 bits (55), Expect = 3.8
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 33 VLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRS 92
V + S + + EE Q I Q++ R + NG T ++ + +
Sbjct: 19 VAVETNSGLV--EAQVIPEETALQVALCILQLIQRYTVLHLHSDNGPCFTAHRIENLCKY 76
Query: 93 LEKELQ 98
L
Sbjct: 77 LGITKT 82
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly
S-adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding; HET: AMP; 1.60A {Methanocaldococcus
jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 25.4 bits (55), Expect = 3.9
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 43 RKVIKN--------LREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLE 94
K ++ L K E L + +IK +L+ + + +
Sbjct: 227 NKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY 286
Query: 95 KELQ 98
+ LQ
Sbjct: 287 RFLQ 290
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function;
1.49A {Bacillus anthracis}
Length = 136
Score = 25.1 bits (55), Expect = 4.0
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 11 KKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKN-----------LREEKPEQYLR 59
K C +E + + V+ + Y ++IKN L+EE Q +
Sbjct: 5 KCLLCRYLKERQEKFISDWKKKVIIRERDPYKEEIIKNGEHLLSAFIMYLKEEISLQEIE 64
Query: 60 LISQILPREKIKQD 73
+ S+ + RE+I
Sbjct: 65 ITSKKIARERIDAK 78
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain,
zinc-binding, structural genomics; NMR {Arabidopsis
thaliana} SCOP: g.79.1.1
Length = 78
Score = 25.2 bits (55), Expect = 4.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 33 VLTDDFS--KYGRKVIKNLREEKPEQYLRLISQILPREK 69
+L D + KYG+KV+K P Y + + K
Sbjct: 16 LLDDGYRWRKYGQKVVKG--NPYPRSYYKCTTPGCGVRK 52
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase,
metalloenzyme, preoxidase; HET: MES; 1.33A
{Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A
1jku_A
Length = 266
Score = 24.9 bits (54), Expect = 5.0
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 25 SLQYLYQSVLTDDFSKYGRKVIKNLREE 52
+ +L Q + KY ++ EE
Sbjct: 39 MMSFLSQGWASTGAEKYKDLLLDTGTEE 66
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A
Length = 531
Score = 24.6 bits (53), Expect = 6.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 7 LPIRKKYPCINRLSHKEISLQYLYQSVLTDDFSKYGRKVIKNLRE 51
LP+R P + S K I LQ +Y+ D + G V K L+
Sbjct: 320 LPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQS 364
>3fyd_A Probable dimethyladenosine transferase; rossman fold, rRNA
methylase, ribosomal assembly, methyltransferase,
RNA-binding; 1.75A {Methanocaldococcus jannaschii} PDB:
3fyc_A*
Length = 263
Score = 24.3 bits (52), Expect = 7.1
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 43 RKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEKELQ 98
K L K E L + +IK +L+ + + + + LQ
Sbjct: 206 IDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQ 261
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 24.3 bits (53), Expect = 7.9
Identities = 14/74 (18%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 31 QSVLTDDFSKYGRKVIKNLREEKPEQYLRLISQILPREKIKQDGITNGDQLTDEQLCEII 90
S+L + R + NL KPE+ + + ++ ++ + G + +++++ L EI+
Sbjct: 40 NSILAQVLDQSARARLSNLALVKPEKTKAVENYLI---QMARYGQLSE-KVSEQGLIEIL 95
Query: 91 RSLEKELQIFTDFK 104
+ + ++ + T K
Sbjct: 96 KKVSQQTEKTTTVK 109
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 23.9 bits (51), Expect = 8.6
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 60 LISQILPREKIKQDGITNGDQLTDEQLCEIIRSLEK 95
+ ++ +K GI + + ++ EQ + S +
Sbjct: 206 IFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor,
developmental protein, glycoprotein, secreted, sensory
transduction, vision; 1.60A {Drosophila melanogaster}
PDB: 3cgu_A
Length = 223
Score = 23.8 bits (51), Expect = 9.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 71 KQDGITNGDQLTDEQLCEIIRSLEK 95
+DG T D+ ++C+ + L
Sbjct: 64 VEDGHTIADKTRHYKMCQPVHKLPV 88
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.132 0.362
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 974,721
Number of extensions: 43143
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 44
Length of query: 122
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 41
Effective length of database: 3,729,466
Effective search space: 152908106
Effective search space used: 152908106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)