HHsearch alignment for GI: 254781147 and conserved domain: COG1396
>COG1396 HipB Predicted transcriptional regulators [Transcription].
Probab=98.02 E-value=2.9e-05 Score=52.05 Aligned_cols=61 Identities=31% Similarity=0.485 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999998399499999986342999988755899-94489999999992899999608
Q gi|254781147|r 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~-~~~~~~l~~la~al~i~~~~l~~ 82 (83)
T Consensus 2 ~~~~~~~~r~~~~~s~~~~a~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (120)
T COG1396 2 IGERLKELRKKKGLSQEELAERLGVSRSTISRIERGRSESPSLELLARLAAALGVSLDELLE 63 (120)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 78999999998699999999893988999999980787784699999999996978998840