HHsearch alignment for GI: 254781147 and conserved domain: COG4800

>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription].
Probab=97.33  E-value=0.00082  Score=43.47  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999839949999998634299998875589994489999999992
Q gi|254781147|r   18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
T Consensus        13 s~E~F~~~l~~~l~Elglt~~eFak~anIP~StLYKil~G-~dpr~~tl~~I~kti   67 (170)
T COG4800          13 SGEDFGSCLQKLLDELGLTPSEFAKRANIPLSTLYKILKG-SDPRYDTLTRIFKTI   67 (170)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCHHHHHHHHHHH
T ss_conf             4007999999999981999899988709989999999817-996577899999999