HHsearch alignment for GI: 254781147 and conserved domain: COG5499
>COG5499 Predicted transcription regulator containing HTH domain [Transcription].
Probab=97.41 E-value=0.00045 Score=45.03 Aligned_cols=58 Identities=19% Similarity=0.384 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
T Consensus 63 e~I~t~Md~~glt~~dLa~~iG-Sks~vS~iL~~rraLTle~ikkL~q~~gIpa~~lIe 120 (120)
T COG5499 63 EVIRTLMDQYGLTLADLANEIG-SKSRVSNILSGRRALTLEHIKKLHQRFGIPADVLIE 120 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 9999999993871888899867-618899997320676699999999986958887539