HHsearch alignment for GI: 254781147 and conserved domain: COG5499

>COG5499 Predicted transcription regulator containing HTH domain [Transcription].
Probab=97.41  E-value=0.00045  Score=45.03  Aligned_cols=58  Identities=19%  Similarity=0.384  Sum_probs=53.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
T Consensus        63 e~I~t~Md~~glt~~dLa~~iG-Sks~vS~iL~~rraLTle~ikkL~q~~gIpa~~lIe  120 (120)
T COG5499          63 EVIRTLMDQYGLTLADLANEIG-SKSRVSNILSGRRALTLEHIKKLHQRFGIPADVLIE  120 (120)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
T ss_conf             9999999993871888899867-618899997320676699999999986958887539