HHsearch alignment for GI: 254781147 and conserved domain: PHA01976
>PHA01976 helix-turn-helix protein.
Probab=99.58 E-value=6.3e-15 Score=109.43 Aligned_cols=61 Identities=25% Similarity=0.320 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf 9999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 (83)
Q Consensus 21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~ 81 (83)
T Consensus 2 ~F~~RL~~lR~~~g~sQ~eLA~~lGVs~~~is~wE~g~~~P~~d~L~~la~~~~VS~D~Ll 62 (67)
T PHA01976 2 SFAIQLIKARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 7899999999986999999999949989999999878989998999999999797899992