HHsearch alignment for GI: 254781147 and conserved domain: PRK06288

>PRK06288 RNA polymerase sigma factor WhiG; Reviewed.
Probab=90.35  E-value=0.33  Score=28.04  Aligned_cols=33  Identities=30%  Similarity=0.306  Sum_probs=28.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999983994999999863429999887558
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G   57 (83)
T Consensus       215 ~Il~lry~e~~Tl~eIa~~lgiS~eRVrQie~~  247 (261)
T PRK06288        215 KVITLYYYEDLTLKEIGEVLGVTESRISQIHTK  247 (261)
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999998079988999999979789999999999