HHsearch alignment for GI: 254781147 and conserved domain: PRK06288
>PRK06288 RNA polymerase sigma factor WhiG; Reviewed.
Probab=90.35 E-value=0.33 Score=28.04 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999983994999999863429999887558
Q gi|254781147|r 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 (83)
Q Consensus 25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G 57 (83)
T Consensus 215 ~Il~lry~e~~Tl~eIa~~lgiS~eRVrQie~~ 247 (261)
T PRK06288 215 KVITLYYYEDLTLKEIGEVLGVTESRISQIHTK 247 (261)
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999998079988999999979789999999999