HHsearch alignment for GI: 254781147 and conserved domain: pfam07022
>pfam07022 Phage_CI_repr Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.
Probab=96.80 E-value=0.0054 Score=38.59 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=47.5
Q ss_pred HHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 99999983994-9999998634299998875589994489999999992899999608
Q gi|254781147|r 26 FRNIRKEAKLT-QKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 26 ir~~R~~~glt-q~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
T Consensus 3 i~Rl~~a~G~~t~~eLA~~LgI~~stis~w~~R~-~~P~e~iv~~~~~tGvsl~WL~~ 59 (65)
T pfam07022 3 IERLMKAYGFKSRSELADHLGVSKSTLSTWYKRD-SFPAEWVIRCALETGVSLDWLAT 59 (65)
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC-CCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 9999999688869999999698888899999869-99899999999998829999970