HHsearch alignment for GI: 254781147 and conserved domain: pfam07022

>pfam07022 Phage_CI_repr Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.
Probab=96.80  E-value=0.0054  Score=38.59  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=47.5

Q ss_pred             HHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             99999983994-9999998634299998875589994489999999992899999608
Q gi|254781147|r   26 FRNIRKEAKLT-QKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        26 ir~~R~~~glt-q~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
T Consensus         3 i~Rl~~a~G~~t~~eLA~~LgI~~stis~w~~R~-~~P~e~iv~~~~~tGvsl~WL~~   59 (65)
T pfam07022         3 IERLMKAYGFKSRSELADHLGVSKSTLSTWYKRD-SFPAEWVIRCALETGVSLDWLAT   59 (65)
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC-CCCHHHHHHHHHHHCCCHHHHHC
T ss_conf             9999999688869999999698888899999869-99899999999998829999970