HHsearch results for GI: 254781147 and protein with PDBid: 1y9q_A

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.61  E-value=1.1e-15  Score=112.63  Aligned_cols=70  Identities=21%  Similarity=0.421  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             898999999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      +.++..  ...+|.+||.+|+++||||++||+++|+|.++||+||+|+.+|++.+|.+||++||+++.+||.
T Consensus         3 ~~d~~~--~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~   72 (192)
T 1y9q_A            3 LTDVMF--KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA   72 (192)
T ss_dssp             -CHHHH--HHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred             CCHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf             537788--9999999999999819999999999893999999998699877634799999885568999547