HHsearch results for GI: 254781147 and protein with PDBid: 1y9q_A
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.61 E-value=1.1e-15 Score=112.63 Aligned_cols=70 Identities=21% Similarity=0.421 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf 898999999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 (83)
Q Consensus 11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~ 82 (83)
+.++.. ...+|.+||.+|+++||||++||+++|+|.++||+||+|+.+|++.+|.+||++||+++.+||.
T Consensus 3 ~~d~~~--~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~ 72 (192)
T 1y9q_A 3 LTDVMF--KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA 72 (192)
T ss_dssp -CHHHH--HHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred CCHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 537788--9999999999999819999999999893999999998699877634799999885568999547