HHsearch results for GI: 254781147 and protein with PDBid: 3ivp_A
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.58 E-value=3.9e-15 Score=109.40 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf 9999999999998399499999986342999988755899944899999999928999996088
Q gi|254781147|r 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 (83)
Q Consensus 20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P 83 (83)
..||.+||.+|+.+||||++||+.+|||+++||+||+|...|++++|.+||++|||++++||.+
T Consensus 11 ~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~ 74 (126)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLP 74 (126)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 9999999999998499999996730999879999970777999999999999979689998288