HHSEARCH alignment of GI: 254781147 and SCOP domain: d1au7a2

Alignment

Probab=97.33  E-value=0.00055  Score=41.80  Aligned_cols=57  Identities=25%  Similarity=0.333  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             999999999999999983994999999863------42999988755899944899999999928
Q gi|254781147|r   16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG------FAQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~g------is~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      +++-+.|+..++..|...|+||.|++..+|      .|+++|+++|+  -+.+..++.++--.|.
T Consensus         2 L~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~--l~LS~kn~~klkPiL~   64 (72)
T d1au7a2           2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN--LQLSFKNACKLKAILS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT--TCSBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf             58899999999987742686299999999986186555037788885--1547988998899999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Pit-1
species: Rat (Rattus norvegicus) [TaxId: 10116]