HHSEARCH alignment of GI: 254781147 and SCOP domain: d1dwka1

Alignment

Probab=97.18  E-value=0.00079  Score=40.86  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             999999999999998399499999986342999988755899944899999999928999996
Q gi|254781147|r   18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL   80 (83)
Q Consensus        18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l   80 (83)
                      -|..+...|...+.++|+|-+++|+.+|.|.-|+...-.|+...+-+...++++.||++-+..
T Consensus        10 ~r~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l~~~L~L~~e~~   72 (86)
T d1dwka1          10 IRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSI   72 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf             699999999999998399899999895988999999984578899999999999749999999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Cyanase N-terminal domain
domain: Cyanase N-terminal domain
species: Escherichia coli [TaxId: 562]