HHSEARCH alignment of GI: 254781147 and SCOP domain: d1e3oc2

Alignment

Probab=97.36  E-value=0.00046  Score=42.26  Aligned_cols=56  Identities=27%  Similarity=0.335  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             999999999999999839949999998634------2999988755899944899999999928
Q gi|254781147|r   17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGF------AQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gi------s~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      .+-+.|+..++..|...|+||.+++..+|.      |+++|+++|+  -+.+..++.++--.|.
T Consensus         7 ~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~--l~LS~kn~~kLkP~L~   68 (75)
T d1e3oc2           7 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMSKLKPLLE   68 (75)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHH--TCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_conf             9999999999987884365589999999987175025889999997--2457988998899999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Oct-1
species: Human (Homo sapiens) [TaxId: 9606]