HHSEARCH alignment of GI: 254781147 and SCOP domain: d1ic8a2

Alignment

Probab=95.98  E-value=0.0069  Score=35.25  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9999999999999839949999998634299998875589994489
Q gi|254781147|r   19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID   64 (83)
Q Consensus        19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~   64 (83)
                      ...++..|+....+.+++|.++|+.+|+|+|+||++-++....+..
T Consensus        26 ~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~M~~~   71 (94)
T d1ic8a2          26 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQ   71 (94)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHH
T ss_conf             9999999999999868859999999801599999998279985179

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Hepatocyte nuclear factor 1a (LFB1/HNF1)
species: Human (Homo sapiens) [TaxId: 9606]