HHSEARCH alignment of GI: 254781147 and SCOP domain: d1r69a_

Alignment

Probab=99.40  E-value=1.8e-13  Score=98.03  Aligned_cols=60  Identities=28%  Similarity=0.305  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             9999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      ||.+|+.+|+++||||+|||+.+|+|+++|++||+|+ +|+.+++.+||++|||++++||.
T Consensus         2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~-~~~~~~l~~ia~~l~v~~~~l~~   61 (63)
T d1r69a_           2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLN   61 (63)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS-CSSCTTHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCHHHHHHHHHHHCCCHHHHHH
T ss_conf             8999999999849969999998373999999987898-94989999999998968999844

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: 434 C1 repressor, DNA-binding domain
species: Bacteriophage 434 [TaxId: 10712]