HHSEARCH alignment of GI: 254781147 and SCOP domain: d1s4ka_

Alignment

Probab=90.03  E-value=0.35  Score=25.12  Aligned_cols=49  Identities=14%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             99999999983994999999863--42999988755899944899999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~g--is~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      +..|..+|+..-||..|-|.-++  ++..+..++|+|...++.+.+..+..
T Consensus         5 ~~ELQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~   55 (120)
T d1s4ka_           5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE   55 (120)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             899999999999759999999965766899999874898998999999999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: YdiL-like
domain: Putative cytoplasmic protein YdiL
species: Salmonella typhimurium [TaxId: 90371]