HHSEARCH alignment of GI: 254781147 and SCOP domain: d1y9qa1

Alignment

Probab=99.54  E-value=1.1e-14  Score=105.41  Aligned_cols=66  Identities=20%  Similarity=0.348  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             999999999999998399499999986342999988755899944899999999928999996088
Q gi|254781147|r   18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP   83 (83)
Q Consensus        18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P   83 (83)
                      .+..||.+|+.+|+.+||||++||+.+|+++++|++||+|+..|+++++.+||++|||++.+||.+
T Consensus         5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~   70 (79)
T d1y9qa1           5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFAN   70 (79)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTT
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf             999999999999998299999999987711648999986998999999999999989879998389

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Probable transcriptional regulator VC1968, N-terminal domain
domain: Probable transcriptional regulator VC1968, N-terminal domain
species: Vibrio cholerae [TaxId: 666]