HHSEARCH alignment of GI: 254781147 and SCOP domain: d2icta1

Alignment

Probab=99.35  E-value=9.9e-13  Score=93.71  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             99999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      |..|+.+|+++||||.+||+.+|||+++||+||+|++.|+.+.+.+|+++||++++.++
T Consensus         3 Ge~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L   61 (87)
T d2icta1           3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWL   61 (87)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             79999999986999999999972469999999985017989999999999891999998

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Antitoxin HigA
species: Escherichia coli [TaxId: 562]