HHSEARCH alignment of GI: 254781147 and SCOP domain: d2o38a1

Alignment

Probab=99.45  E-value=2.3e-14  Score=103.36  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             999999999999999999839949999998634299998875589-994489999999992899999608
Q gi|254781147|r   14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        14 ~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      +....+..+|..|+.+|+++||||+++|+++|+++++||+||||+ .+|++++|.+||.+||++++.++.
T Consensus         4 ~~~~~k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~   73 (89)
T d2o38a1           4 EERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIR   73 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHEEC
T ss_conf             6899999999999999999599999999999733708999984997898689999999990998887015

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: NE1354
domain: Hypothetical protein RPA3824
species: Rhodopseudomonas palustris [TaxId: 1076]