Query         gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 83
No_of_seqs    109 out of 8897
Neff          7.1 
Searched_HMMs 13730
Date          Wed Jun  1 11:45:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781147.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1y7ya1 a.35.1.3 (A:5-73) Rest  99.6 4.2E-15 3.1E-19  107.8   8.0   64   18-81      6-69  (69)
  2 d2b5aa1 a.35.1.3 (A:1-77) Regu  99.6 8.1E-15 5.9E-19  106.1   9.3   66   17-82      6-71  (77)
  3 d1y9qa1 a.35.1.8 (A:4-82) Prob  99.5 1.1E-14 7.7E-19  105.4   8.2   66   18-83      5-70  (79)
  4 d1b0na2 a.35.1.3 (A:1-68) SinR  99.5 1.6E-14 1.1E-18  104.4   7.7   62   22-83      2-64  (68)
  5 d1lmb3_ a.35.1.2 (3:) lambda C  99.5 2.4E-14 1.8E-18  103.2   8.5   72   11-82      2-73  (87)
  6 d2ofya1 a.35.1.3 (A:3-84) Puta  99.5 5.7E-14 4.1E-18  101.1   9.9   70   11-82      4-74  (82)
  7 d1utxa_ a.35.1.3 (A:) Putative  99.5 5.8E-15 4.2E-19  106.9   4.2   62   22-83      2-63  (66)
  8 d2r1jl1 a.35.1.2 (L:3-68) P22   99.5 6.2E-14 4.5E-18  100.8   7.9   62   21-82      3-64  (66)
  9 d2o38a1 a.35.1.13 (A:28-116) H  99.5 2.3E-14 1.7E-18  103.4   4.7   69   14-82      4-73  (89)
 10 d1x57a1 a.35.1.12 (A:8-85) End  99.4 7.9E-14 5.8E-18  100.2   5.8   61   20-80      5-65  (78)
 11 d1r69a_ a.35.1.2 (A:) 434 C1 r  99.4 1.8E-13 1.3E-17   98.0   6.5   60   22-82      2-61  (63)
 12 d2croa_ a.35.1.2 (A:) cro 434   99.4 2.5E-13 1.8E-17   97.3   7.0   61   21-82      3-63  (65)
 13 d2a6ca1 a.35.1.13 (A:1-69) HTH  99.4 2.2E-13 1.6E-17   97.6   5.9   66   16-81      1-67  (69)
 14 d2icta1 a.35.1.3 (A:8-94) Anti  99.3 9.9E-13 7.2E-17   93.7   7.4   59   23-81      3-61  (87)
 15 d2ppxa1 a.35.1.3 (A:30-91) Unc  99.0 5.6E-10 4.1E-14   77.4   6.2   56   25-81      3-58  (62)
 16 d2auwa1 a.35.1.10 (A:88-154) H  98.6 1.7E-08 1.2E-12   68.6   5.2   44   23-66      3-46  (67)
 17 d2bnma1 a.35.1.3 (A:6-76) Hydr  97.6 0.00012 8.8E-09   45.7   7.1   64   20-83      4-68  (71)
 18 d1e3oc2 a.35.1.1 (C:1-75) Oct-  97.4 0.00046 3.3E-08   42.3   7.9   56   17-74      7-68  (75)
 19 d1au7a2 a.35.1.1 (A:5-76) Pit-  97.3 0.00055   4E-08   41.8   8.0   57   16-74      2-64  (72)
 20 d1dwka1 a.35.1.4 (A:1-86) Cyan  97.2 0.00079 5.7E-08   40.9   7.5   63   18-80     10-72  (86)
 21 d1efaa1 a.35.1.5 (A:2-60) Lac   96.4  0.0017 1.2E-07   38.9   4.1   44   33-76      1-47  (59)
 22 d2hsga1 a.35.1.5 (A:2-58) Gluc  96.3  0.0027   2E-07   37.6   5.1   43   34-76      1-46  (57)
 23 d1ic8a2 a.35.1.1 (A:87-180) He  96.0  0.0069 5.1E-07   35.2   5.7   46   19-64     26-71  (94)
 24 d1qpza1 a.35.1.5 (A:2-58) Puri  96.0  0.0044 3.2E-07   36.4   4.7   42   36-77      2-46  (57)
 25 d2awia1 a.35.1.11 (A:2-66) Prg  95.9   0.016 1.2E-06   33.1   7.2   59   22-81      3-61  (65)
 26 d1nera_ a.35.1.2 (A:) Ner {Bac  95.3   0.023 1.7E-06   32.2   6.2   56   24-82     12-67  (74)
 27 d1uxda_ a.35.1.5 (A:) Fructose  94.9  0.0046 3.4E-07   36.3   1.8   43   35-77      1-49  (59)
 28 d1jhga_ a.4.12.1 (A:) Trp repr  93.5   0.061 4.5E-06   29.6   5.1   41   17-57     39-81  (101)
 29 d1vz0a1 a.4.14.1 (A:116-208) P  93.2   0.051 3.7E-06   30.1   4.2   31   23-54      9-39  (93)
 30 d2ox6a1 a.35.1.6 (A:5-166) Hyp  92.7    0.22 1.6E-05   26.3   6.9   48   23-70      5-52  (162)
 31 d1r71a_ a.4.14.1 (A:) Transcri  91.6    0.12 8.8E-06   27.9   4.6   34   22-56     19-52  (114)
 32 d2jn6a1 a.4.1.19 (A:1-89) Unch  91.2    0.11 8.2E-06   28.1   4.0   27   29-55     18-44  (89)
 33 d1s4ka_ a.35.1.6 (A:) Putative  90.0    0.35 2.6E-05   25.1   5.7   49   23-71      5-55  (120)
 34 d1ijwc_ a.4.1.2 (C:) HIN recom  89.7    0.15 1.1E-05   27.4   3.6   31   26-57     14-44  (47)
 35 d1z05a1 a.4.5.63 (A:10-80) Tra  89.2    0.22 1.6E-05   26.3   4.1   33   22-54      8-40  (71)
 36 d2csfa1 a.35.1.7 (A:8-95) DNA-  89.0    0.59 4.3E-05   23.8   6.2   60   20-79     13-79  (88)
 37 d1nr3a_ d.236.1.1 (A:) DNA-bin  87.6  0.0076 5.5E-07   35.0  -4.2   26   32-57      3-28  (122)
 38 d1z6ra1 a.4.5.63 (A:12-81) Mlc  87.4    0.21 1.5E-05   26.5   3.1   32   23-54      8-39  (70)
 39 d1rp3a2 a.4.13.2 (A:164-234) S  87.1    0.31 2.3E-05   25.5   3.8   33   24-56     27-59  (71)
 40 d1k78a1 a.4.1.5 (A:19-81) Pax-  86.9    0.63 4.6E-05   23.6   5.3   39   22-61     19-62  (63)
 41 d1hlva1 a.4.1.7 (A:1-66) DNA-b  86.5    0.32 2.4E-05   25.3   3.7   33   26-58     17-49  (66)
 42 d1x2la1 a.35.1.7 (A:9-95) Home  86.1    0.55   4E-05   24.0   4.7   57   20-76     12-75  (87)
 43 d1s7oa_ a.4.13.3 (A:) Hypothet  85.6    0.47 3.4E-05   24.4   4.1   33   24-56     22-54  (106)
 44 d2o4aa1 a.35.1.7 (A:370-452) D  85.5    0.97 7.1E-05   22.5   5.7   59   21-79      5-70  (83)
 45 d2o7ta1 a.4.1.9 (A:1-78) Trans  84.7    0.84 6.1E-05   22.9   5.1   52   20-71     11-64  (78)
 46 d1ku3a_ a.4.13.2 (A:) Sigma70   84.6    0.46 3.4E-05   24.4   3.7   26   32-57     26-51  (61)
 47 d2hoea1 a.4.5.63 (A:10-71) N-a  84.4    0.43 3.2E-05   24.6   3.5   29   25-54      4-32  (62)
 48 d1i5za1 a.4.5.4 (A:138-206) Ca  82.6    0.37 2.7E-05   25.0   2.5   22   34-55     29-50  (69)
 49 d1wh8a_ a.35.1.7 (A:) Homeobox  82.4    0.98 7.2E-05   22.5   4.6   58   19-76     29-93  (111)
 50 d3e5ua1 a.4.5.4 (A:148-227) Ch  82.4    0.41   3E-05   24.8   2.7   22   33-54     29-50  (80)
 51 d2d1ha1 a.4.5.50 (A:1-109) Hyp  82.0    0.55   4E-05   24.0   3.2   30   25-54     26-56  (109)
 52 d1j5ya1 a.4.5.1 (A:3-67) Putat  81.9     1.1 7.9E-05   22.2   4.7   34   21-54      8-42  (65)
 53 d2o3fa1 a.4.1.20 (A:1-83) Puta  81.7    0.93 6.8E-05   22.6   4.3   44   22-65     23-67  (83)
 54 d2bgca1 a.4.5.4 (A:138-237) Li  81.5    0.43 3.1E-05   24.6   2.5   41   34-74     31-85  (100)
 55 d1ft9a1 a.4.5.4 (A:134-213) CO  81.3    0.45 3.3E-05   24.5   2.6   22   33-54     29-50  (80)
 56 d1wh6a_ a.35.1.7 (A:) Homeobox  81.2       1 7.3E-05   22.4   4.3   40   19-58     19-59  (101)
 57 d1zyba1 a.4.5.4 (A:148-220) Pr  81.0    0.46 3.4E-05   24.4   2.6   22   33-54     26-47  (73)
 58 d1s7ea2 a.35.1.7 (A:6-85) Hepa  80.9    0.55   4E-05   24.0   2.9   57   20-76      5-67  (80)
 59 d2gaua1 a.4.5.4 (A:152-232) Tr  80.7    0.44 3.2E-05   24.5   2.4   39   33-71     28-79  (81)
 60 d1xsva_ a.4.13.3 (A:) Hypothet  80.5    0.81 5.9E-05   23.0   3.7   31   25-55     25-55  (106)
 61 d1umqa_ a.4.1.12 (A:) Photosyn  80.1    0.72 5.2E-05   23.3   3.3   32   23-54     22-53  (60)
 62 d2a61a1 a.4.5.28 (A:5-143) Tra  79.4    0.93 6.7E-05   22.6   3.7   32   23-54     33-64  (139)
 63 d2fbqa1 a.4.1.9 (A:2-80) Trans  79.3    0.35 2.5E-05   25.2   1.5   55   23-77     13-67  (79)
 64 d1or7a1 a.4.13.2 (A:120-187) S  79.1       1 7.5E-05   22.4   3.8   31   24-54     24-54  (68)
 65 d1biaa1 a.4.5.1 (A:1-63) Bioti  79.0    0.55   4E-05   24.0   2.4   31   24-54      9-39  (63)
 66 d1etxa_ a.4.1.12 (A:) FIS prot  78.9     1.2 8.7E-05   22.0   4.1   32   23-54     51-82  (89)
 67 d1gdta1 a.4.1.2 (A:141-183) ga  78.9     1.2 8.6E-05   22.0   4.1   33   24-57      9-41  (43)
 68 d1v7ba1 a.4.1.9 (A:1-74) Trans  78.8    0.34 2.5E-05   25.2   1.3   54   23-76     13-66  (74)
 69 d2g7sa1 a.4.1.9 (A:3-76) Putat  78.6    0.44 3.2E-05   24.6   1.8   53   23-75     13-65  (74)
 70 d2id6a1 a.4.1.9 (A:1-75) Trans  78.5    0.46 3.3E-05   24.5   1.9   58   23-80     12-69  (75)
 71 d1pb6a1 a.4.1.9 (A:14-85) Hypo  78.4     1.4  0.0001   21.6   4.3   54   20-73      8-63  (72)
 72 d1z0xa1 a.4.1.9 (A:4-71) Trans  78.2    0.37 2.7E-05   25.0   1.3   56   21-76      7-65  (68)
 73 d2gfna1 a.4.1.9 (A:4-80) Proba  78.1    0.36 2.7E-05   25.0   1.3   47   32-78     24-70  (77)
 74 d2p7vb1 a.4.13.2 (B:546-613) S  77.9    0.87 6.3E-05   22.8   3.2   26   32-57     23-48  (68)
 75 d1sfxa_ a.4.5.50 (A:) Hypothet  77.5     1.4 0.00011   21.5   4.2   32   23-54     23-54  (109)
 76 d1vi0a1 a.4.1.9 (A:6-77) Hypot  77.3     1.3 9.6E-05   21.7   4.0   49   26-74     13-61  (72)
 77 d2zcwa1 a.4.5.4 (A:118-199) Tr  77.1    0.71 5.2E-05   23.3   2.5   40   33-72     28-80  (82)
 78 d2cfxa1 a.4.5.32 (A:1-63) Tran  76.9       1 7.4E-05   22.4   3.3   30   24-53      9-38  (63)
 79 d1q06a_ a.6.1.3 (A:) Transcrip  76.4    0.72 5.2E-05   23.3   2.4   46   35-80      1-63  (127)
 80 d2etha1 a.4.5.28 (A:1-140) Put  76.3     1.2 8.9E-05   21.9   3.5   30   25-54     37-66  (140)
 81 d2g7ga1 a.4.1.9 (A:9-73) Putat  76.3    0.54 3.9E-05   24.0   1.7   53   22-74      7-59  (65)
 82 d1pdnc_ a.4.1.5 (C:) Paired pr  76.3     2.1 0.00015   20.5   4.8   32   22-54     21-52  (123)
 83 d2hyja1 a.4.1.9 (A:8-82) Putat  75.9    0.64 4.7E-05   23.6   2.0   51   23-73     14-64  (75)
 84 d1r8da_ a.6.1.3 (A:) Multidrug  75.7     0.7 5.1E-05   23.4   2.2   47   34-80      2-65  (109)
 85 d3ctaa1 a.4.5.28 (A:5-89) Ta10  75.3    0.73 5.3E-05   23.2   2.2   32   23-54      4-41  (85)
 86 d1lj9a_ a.4.5.28 (A:) Transcri  74.3     1.1 7.7E-05   22.3   2.8   30   25-54     34-63  (144)
 87 d2ao9a1 a.4.1.17 (A:13-132) Ph  74.2    0.88 6.4E-05   22.8   2.4   24   33-56     35-58  (120)
 88 d1t56a1 a.4.1.9 (A:22-94) Ethr  74.2     1.2 8.5E-05   22.0   3.0   49   26-74     15-63  (73)
 89 d2d6ya1 a.4.1.9 (A:7-74) Putat  74.1     1.5 0.00011   21.4   3.5   48   23-70     11-58  (68)
 90 d1ttya_ a.4.13.2 (A:) Sigma70   73.9     1.6 0.00012   21.2   3.7   43   32-74     36-83  (87)
 91 d1z91a1 a.4.5.28 (A:8-144) Org  73.5     0.9 6.6E-05   22.7   2.3   30   25-54     38-67  (137)
 92 d1lnwa_ a.4.5.28 (A:) MexR rep  73.5       1 7.6E-05   22.3   2.6   29   26-54     42-70  (141)
 93 d1i1ga1 a.4.5.32 (A:2-61) LprA  73.0     1.7 0.00012   21.1   3.6   29   25-53      8-36  (60)
 94 d3broa1 a.4.5.28 (A:3-137) Tra  72.9     2.2 0.00016   20.4   4.1   29   26-54     35-65  (135)
 95 d2cg4a1 a.4.5.32 (A:4-66) Regu  72.6     1.7 0.00013   21.0   3.6   29   25-53     10-38  (63)
 96 d2fxaa1 a.4.5.28 (A:6-167) Pro  71.8     1.5 0.00011   21.4   3.1   30   25-54     46-75  (162)
 97 d1jt6a1 a.4.1.9 (A:2-72) Multi  71.8     1.5 0.00011   21.3   3.1   49   23-71     10-58  (71)
 98 d2g3ba1 a.4.1.9 (A:2-73) Putat  71.5     3.1 0.00023   19.5   4.7   45   26-70     14-58  (72)
 99 d2oi8a1 a.4.1.9 (A:8-86) Putat  71.2     2.6 0.00019   20.0   4.2   51   23-73     18-68  (79)
100 d1jgsa_ a.4.5.28 (A:) Multiple  71.0       2 0.00015   20.6   3.6   30   25-54     39-68  (138)
101 d1rkta1 a.4.1.9 (A:2-82) Hypot  70.7    0.94 6.9E-05   22.6   1.9   46   26-71     23-68  (81)
102 d1s3ja_ a.4.5.28 (A:) Putative  70.5     1.5 0.00011   21.4   2.8   31   24-54     39-69  (143)
103 d1r8ea1 a.6.1.3 (A:3-120) Tran  70.1    0.94 6.9E-05   22.6   1.7   47   34-80      3-67  (118)
104 d2gena1 a.4.1.9 (A:6-75) Proba  69.9    0.81 5.9E-05   23.0   1.4   50   24-73     10-59  (70)
105 d2cyya1 a.4.5.32 (A:5-64) Puta  69.9     2.1 0.00015   20.5   3.5   30   24-53      7-36  (60)
106 d2id3a1 a.4.1.9 (A:13-80) Puta  69.9     1.1 8.1E-05   22.2   2.1   44   27-70     19-62  (68)
107 d1d1la_ a.35.1.2 (A:) cro lamb  69.0     1.7 0.00012   21.1   2.8   34   27-62      8-41  (61)
108 d2fbia1 a.4.5.28 (A:5-140) Pro  68.1       2 0.00014   20.7   3.1   30   25-54     35-64  (136)
109 d1ntca_ a.4.1.12 (A:) DNA-bind  67.8     1.6 0.00012   21.2   2.5   30   24-53     54-83  (91)
110 d2vkva1 a.4.1.9 (A:6-67) Tetra  67.4     2.4 0.00017   20.2   3.3   46   23-68      8-53  (62)
111 d1aisb1 a.74.1.2 (B:1108-1205)  67.4     2.6 0.00019   19.9   3.6   40   31-81     59-98  (98)
112 d2fq4a1 a.4.1.9 (A:9-77) Trans  67.0     3.8 0.00028   19.0   4.3   44   23-66     13-56  (69)
113 d2fbha1 a.4.5.28 (A:8-144) Tra  66.6     2.6 0.00019   20.0   3.4   29   26-54     34-63  (137)
114 d2i10a1 a.4.1.9 (A:10-78) Puta  66.4    0.63 4.6E-05   23.6   0.2   45   23-67      9-53  (69)
115 d1zs4a1 a.35.1.9 (A:4-81) Regu  66.3    0.99 7.2E-05   22.5   1.2   37   33-70     19-55  (78)
116 d2fx0a1 a.4.1.9 (A:4-76) Hemol  66.3     4.1  0.0003   18.8   4.4   45   23-67     13-57  (73)
117 d1ui5a1 a.4.1.9 (A:5-75) A-fac  65.9     1.7 0.00012   21.1   2.3   46   23-68     14-59  (71)
118 d1mkma1 a.4.5.33 (A:1-75) Tran  65.6     1.3 9.6E-05   21.7   1.8   25   30-54     16-40  (75)
119 d1zk8a1 a.4.1.9 (A:6-77) Trans  65.6     1.5 0.00011   21.3   2.1   49   23-71     12-60  (72)
120 d2hr3a1 a.4.5.28 (A:2-146) Pro  65.1     3.2 0.00023   19.4   3.6   29   26-54     40-69  (145)
121 d2g7la1 a.4.1.9 (A:16-83) Puta  64.8    0.58 4.3E-05   23.8  -0.2   47   23-69     13-59  (68)
122 d2np5a1 a.4.1.9 (A:9-77) Trans  64.1     1.7 0.00013   21.0   2.1   48   26-73     13-60  (69)
123 d1ku9a_ a.4.5.36 (A:) DNA-bind  63.7     1.8 0.00013   21.0   2.1   23   32-54     39-61  (151)
124 d1bl0a1 a.4.1.8 (A:9-62) MarA   62.7     1.1 8.2E-05   22.1   1.0   28   31-58     16-43  (54)
125 d2bv6a1 a.4.5.28 (A:5-140) Tra  62.2    0.99 7.2E-05   22.5   0.6   31   24-54     38-68  (136)
126 d1rzsa_ a.35.1.2 (A:) cro p22   62.1     2.2 0.00016   20.5   2.3   32   36-70     12-43  (61)
127 d3c07a1 a.4.1.9 (A:15-89) Puta  61.2     5.1 0.00037   18.2   5.7   40   32-71     23-62  (75)
128 d3deua1 a.4.5.28 (A:2-141) Tra  59.1     3.2 0.00023   19.5   2.7   30   25-54     36-66  (140)
129 d1a04a1 a.4.6.2 (A:150-216) Ni  58.9     3.2 0.00023   19.5   2.7   26   31-56     18-43  (67)
130 d1ub9a_ a.4.5.28 (A:) Hypothet  58.5     3.1 0.00023   19.5   2.6   29   26-54     22-50  (100)
131 d2fd5a1 a.4.1.9 (A:1-76) Proba  58.5     1.9 0.00014   20.7   1.6   51   23-73     16-66  (76)
132 d1d5ya1 a.4.1.8 (A:3-56) Rob t  58.4     1.1 8.3E-05   22.1   0.4   27   32-58     17-43  (54)
133 d1u2wa1 a.4.5.5 (A:12-119) Cad  58.0     3.9 0.00028   19.0   3.0   27   28-54     39-65  (108)
134 d2hkua1 a.4.1.9 (A:18-87) Puta  57.6     3.2 0.00023   19.4   2.6   37   32-68     18-54  (70)
135 d1t33a1 a.4.1.9 (A:1-88) Putat  57.5       6 0.00043   17.8   5.9   40   33-73     31-70  (88)
136 d2frha1 a.4.5.28 (A:102-216) P  56.8     3.6 0.00026   19.1   2.7   28   27-54     40-69  (115)
137 d1j9ia_ a.6.1.5 (A:) Terminase  55.6     2.5 0.00018   20.1   1.7   23   34-56      2-24  (68)
138 d1r1ua_ a.4.5.5 (A:) Metal-sen  55.5     6.1 0.00044   17.8   3.7   26   29-54     26-51  (94)
139 d1fsea_ a.4.6.2 (A:) Germinati  54.1     4.3 0.00031   18.7   2.7   26   31-56     16-41  (67)
140 d1r1ta_ a.4.5.5 (A:) SmtB repr  53.9     4.6 0.00034   18.5   2.9   24   31-54     33-56  (98)
141 d1ngra_ a.77.1.2 (A:) p75 low   52.8     3.9 0.00028   18.9   2.4   47   34-81     21-67  (85)
142 d1g2ha_ a.4.1.12 (A:) Transcri  52.6     6.2 0.00045   17.8   3.3   28   26-54     26-53  (61)
143 d1rr7a_ a.4.1.14 (A:) Middle o  52.3     7.2 0.00053   17.3   3.6   34   24-57     56-89  (94)
144 d1yioa1 a.4.6.2 (A:131-200) Re  51.8     4.9 0.00035   18.4   2.7   25   31-55     24-48  (70)
145 d1l3la1 a.4.6.2 (A:170-234) Qu  50.9     5.1 0.00037   18.2   2.7   27   30-56     15-41  (65)
146 d1p4xa2 a.4.5.28 (A:126-250) S  50.8     3.1 0.00022   19.5   1.6   24   31-54     46-69  (125)
147 d2np3a1 a.4.1.9 (A:35-99) Puta  50.1     1.5 0.00011   21.4  -0.2   42   25-66      7-48  (65)
148 d2iu5a1 a.4.1.9 (A:1-71) Trans  48.0     1.8 0.00013   21.0  -0.0   38   30-67     22-59  (71)
149 d1ulya_ a.4.5.58 (A:) Hypothet  47.4     7.3 0.00053   17.3   3.0   27   28-54     26-52  (190)
150 d1a9xa1 a.92.1.1 (A:403-555) C  46.6     5.6 0.00041   18.0   2.3   26   31-56     41-66  (153)
151 d1p4wa_ a.4.6.2 (A:) Transcrip  46.5     6.1 0.00044   17.8   2.5   47   29-75     32-82  (87)
152 d1sgma1 a.4.1.9 (A:5-77) Putat  45.7     2.6 0.00019   20.0   0.5   49   23-71     11-60  (73)
153 d1hsja1 a.4.5.28 (A:373-487) S  45.6     2.7  0.0002   19.9   0.6   24   31-54     45-68  (115)
154 d2fbka1 a.4.5.28 (A:8-179) Tra  40.4     1.8 0.00013   20.9  -0.9   21   34-54     79-99  (172)
155 d1vola2 a.74.1.2 (A:208-316) T  40.4     8.7 0.00063   16.9   2.5   25   31-55     58-82  (109)
156 d1d2za_ a.77.1.2 (A:) Pelle de  39.9      11 0.00083   16.2   3.9   46   36-81     27-75  (102)
157 d1aisb2 a.74.1.2 (B:1206-1300)  34.8      13 0.00093   15.9   2.7   26   31-56     57-82  (95)
158 d2p4wa1 a.4.5.64 (A:1-194) Tra  34.3      14   0.001   15.6   3.5   24   31-54     25-48  (194)
159 d1hw1a1 a.4.5.6 (A:5-78) Fatty  33.8      11 0.00081   16.2   2.2   22   33-54     25-47  (74)
160 d2isya1 a.4.5.24 (A:2-64) Iron  33.7      12 0.00088   16.0   2.4   30   25-54     13-43  (63)
161 d1e0ga_ d.7.1.1 (A:) Membrane-  32.3     7.4 0.00054   17.3   1.1   22   33-54      9-30  (48)
162 d1ylfa1 a.4.5.55 (A:5-142) Hyp  31.4      15  0.0011   15.5   2.6   45   31-75     20-82  (138)
163 d1p4xa1 a.4.5.28 (A:1-125) Sta  29.6       4 0.00029   18.9  -0.6   22   33-54     49-70  (125)
164 d3bwga1 a.4.5.6 (A:5-82) Trans  29.3      14   0.001   15.7   2.1   24   31-54     18-42  (78)
165 d2esna1 a.4.5.37 (A:3-91) Prob  24.7      20  0.0015   14.7   2.2   19   36-54     22-40  (89)
166 d2hs5a1 a.4.5.6 (A:25-93) Puta  24.1      18  0.0013   15.0   1.9   22   33-54     24-45  (69)
167 d1jhfa1 a.4.5.2 (A:2-72) LexA   24.0      21  0.0016   14.5   5.1   35   20-54      8-45  (71)
168 d1d4ca3 d.168.1.1 (A:360-505)   23.4      22  0.0016   14.5   2.2   20   33-52     83-102 (146)
169 d1xd7a_ a.4.5.55 (A:) Hypothet  22.9      22  0.0016   14.4   3.3   46   31-76     15-78  (127)
170 d1twda_ c.1.30.1 (A:) Copper h  21.4     8.7 0.00063   16.9  -0.1   44   40-83     15-59  (247)
171 d1sfua_ a.4.5.19 (A:) 34L {Yab  21.1      20  0.0014   14.7   1.6   34   21-54     11-44  (70)
172 d1y0pa3 d.168.1.1 (A:362-504)   20.7      25  0.0018   14.1   2.3   19   33-51     82-100 (143)
173 d2ev0a1 a.4.5.24 (A:2-62) Mang  20.2      26  0.0019   14.1   5.1   25   30-54     17-41  (61)
174 d2edua1 a.60.2.7 (A:8-98) KIF2  20.1      21  0.0015   14.6   1.6   35   21-55     44-80  (91)

No 1  
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=99.56  E-value=4.2e-15  Score=107.76  Aligned_cols=64  Identities=23%  Similarity=0.454  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             9999999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r   18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      +-..||.+|+.+|+++||||+++|+.+|+|+++|++||+|+..|+++++.+||++||+++.+||
T Consensus         6 ~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF   69 (69)
T d1y7ya1           6 DLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf             9999999999999983999999986829989899999879999999999999999695999979


No 2  
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=99.56  E-value=8.1e-15  Score=106.08  Aligned_cols=66  Identities=24%  Similarity=0.473  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      ..+..||.+|+.+|+++||||+++|+.+|+|+++|++||+|+..|+++++.+||++|||++++||.
T Consensus         6 ~~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~   71 (77)
T d2b5aa1           6 EIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR   71 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf             999999999999999809999999989797999999998699899999999999996989999854


No 3  
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=99.54  E-value=1.1e-14  Score=105.41  Aligned_cols=66  Identities=20%  Similarity=0.348  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             999999999999998399499999986342999988755899944899999999928999996088
Q gi|254781147|r   18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP   83 (83)
Q Consensus        18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P   83 (83)
                      .+..||.+|+.+|+.+||||++||+.+|+++++|++||+|+..|+++++.+||++|||++.+||.+
T Consensus         5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~   70 (79)
T d1y9qa1           5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFAN   70 (79)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTT
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf             999999999999998299999999987711648999986998999999999999989879998389


No 4  
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.52  E-value=1.6e-14  Score=104.41  Aligned_cols=62  Identities=23%  Similarity=0.367  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             99999999998399499999986342999988755899-944899999999928999996088
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLLKP   83 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~-~~~~~~l~~la~al~i~~~~l~~P   83 (83)
                      +|.+|+.+|+++||||.+||+.+|+|+++|++||+|.. +|+++++.+||++||+++.+||.+
T Consensus         2 ig~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~~   64 (68)
T d1b0na2           2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDE   64 (68)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf             799999999982999999998979799999999859989999999999999989869998399


No 5  
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=99.51  E-value=2.4e-14  Score=103.24  Aligned_cols=72  Identities=21%  Similarity=0.310  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             898999999999999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      +++........++..++.+|+++||||++||+.+|+|+++|++||+|...|+++++.+||++|++++.+||.
T Consensus         2 ~t~~~~~~~~~l~~~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~s~~~l~~ia~~l~v~~~~~~~   73 (87)
T d1lmb3_           2 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP   73 (87)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCH
T ss_conf             498999999999999999999939999999988672288899998114787599999999998979999874


No 6  
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=99.51  E-value=5.7e-14  Score=101.06  Aligned_cols=70  Identities=19%  Similarity=0.231  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             898999999999999999999839949999998634299998875589-994489999999992899999608
Q gi|254781147|r   11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        11 ~~~~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      ++++.......||.+||.+|+  ++||.|||+++|+|+++||+||+|+ .+|++++|.+||++||+++++||.
T Consensus         4 ~t~e~~~~~~~lG~~ir~~R~--~~t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~tl~kia~~L~v~~~~Ll~   74 (82)
T d2ofya1           4 LTAEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAA   74 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf             888888899999999999998--07999999897179999999982986788899999999998988999985


No 7  
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=99.50  E-value=5.8e-15  Score=106.93  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             99999999998399499999986342999988755899944899999999928999996088
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP   83 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~P   83 (83)
                      ++.+|+.+|+++||||+++|+++|+|++++|+||+|+.+|+++++.+||++||+++++||.+
T Consensus         2 i~~ri~~lR~~~g~tq~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf~~   63 (66)
T d1utxa_           2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQW   63 (66)
T ss_dssp             EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEE
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf             89999999998599999998863557989999986998999999999999979879998298


No 8  
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=99.47  E-value=6.2e-14  Score=100.83  Aligned_cols=62  Identities=26%  Similarity=0.326  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      .+|.+|+.+|+++||||.++|+.+|+|+++|++||+|...|+++.+.+||++|+|++++||.
T Consensus         3 ~ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll~   64 (66)
T d2r1jl1           3 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK   64 (66)
T ss_dssp             CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf             99999999999859999999999798999999998699899999999999996988999846


No 9  
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=99.45  E-value=2.3e-14  Score=103.36  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             999999999999999999839949999998634299998875589-994489999999992899999608
Q gi|254781147|r   14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        14 ~~~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      +....+..+|..|+.+|+++||||+++|+++|+++++||+||||+ .+|++++|.+||.+||++++.++.
T Consensus         4 ~~~~~k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~   73 (89)
T d2o38a1           4 EERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIR   73 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHEEC
T ss_conf             6899999999999999999599999999999733708999984997898689999999990998887015


No 10 
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42  E-value=7.9e-14  Score=100.21  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             9999999999998399499999986342999988755899944899999999928999996
Q gi|254781147|r   20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL   80 (83)
Q Consensus        20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l   80 (83)
                      ..||.+|+.+|+.+||||++||+.+|+|+++|++||+|+..|+++++.+||++|||++..+
T Consensus         5 ~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~v~l~~~   65 (78)
T d1x57a1           5 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK   65 (78)
T ss_dssp             CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             8999999999998599726788718878999999980677999999999999909966456


No 11 
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=99.40  E-value=1.8e-13  Score=98.03  Aligned_cols=60  Identities=28%  Similarity=0.305  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             9999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      ||.+|+.+|+++||||+|||+.+|+|+++|++||+|+ +|+.+++.+||++|||++++||.
T Consensus         2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~-~~~~~~l~~ia~~l~v~~~~l~~   61 (63)
T d1r69a_           2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLN   61 (63)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS-CSSCTTHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCHHHHHHHHHHHCCCHHHHHH
T ss_conf             8999999999849969999998373999999987898-94989999999998968999844


No 12 
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=99.40  E-value=2.5e-13  Score=97.27  Aligned_cols=61  Identities=21%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      .||.+|+.+|+++||||+|||+.+|+++++|++||+|+..|+ +++.+||++|||++++|+.
T Consensus         3 ~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~   63 (65)
T d2croa_           3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQY   63 (65)
T ss_dssp             SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHH
T ss_conf             899999999998499999999997867949998787799999-9999999996998999833


No 13 
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=99.38  E-value=2.2e-13  Score=97.58  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             9999999999999999839949999998634299998875589-99448999999999289999960
Q gi|254781147|r   16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      |+-+..|+.+|+.+|+++||||+|+|+.+|+++++||+||+|+ .+|++++|.++|++||++++..+
T Consensus         1 M~~~~~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~~~~~s~~~L~~ia~~Lg~~i~~~~   67 (69)
T d2a6ca1           1 MKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI   67 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9679999999999999969999999999874784799997665201008999999999199707651


No 14 
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=99.35  E-value=9.9e-13  Score=93.71  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             99999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      |..|+.+|+++||||.+||+.+|||+++||+||+|++.|+.+.+.+|+++||++++.++
T Consensus         3 Ge~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L   61 (87)
T d2icta1           3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWL   61 (87)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             79999999986999999999972469999999985017989999999999891999998


No 15 
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=98.95  E-value=5.6e-10  Score=77.36  Aligned_cols=56  Identities=21%  Similarity=0.215  Sum_probs=48.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      +||.+|+..||||+++|+.+|||+++|++||+|+..|+...+..+ ..++..++.+|
T Consensus         3 ~ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll-~~l~~~Pe~v~   58 (62)
T d2ppxa1           3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYL-KIIAVDPEGTA   58 (62)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHH-HHHHHCHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH-HHHHCCHHHHH
T ss_conf             889999996999999999969899999988779889999999999-99866999999


No 16 
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=98.63  E-value=1.7e-08  Score=68.58  Aligned_cols=44  Identities=14%  Similarity=0.126  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             99999999983994999999863429999887558999448999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM   66 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l   66 (83)
                      ++.|+.+|++.||||+++|+.+|||+++|++||+|++.++....
T Consensus         3 ~e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE~G~r~iP~~v~   46 (67)
T d2auwa1           3 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIW   46 (67)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf             89999999995999999999959989999999869999998999


No 17 
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=97.56  E-value=0.00012  Score=45.71  Aligned_cols=64  Identities=19%  Similarity=0.330  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             999999999999839949999998634299998875589-9944899999999928999996088
Q gi|254781147|r   20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLKP   83 (83)
Q Consensus        20 ~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~-~~~~~~~l~~la~al~i~~~~l~~P   83 (83)
                      --|+..++..|++-+|.-+.+|..+|-++-++..||||. ...++..|-+|+++|+.++..|-.|
T Consensus         4 tgfae~lk~rreqvkmdhaalas~lgetpetvaawengeggeltltqlg~ia~~lgtsigaltpp   68 (71)
T d2bnma1           4 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPP   68 (71)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCCC
T ss_conf             04899999999997111999999976890678886358875052999888999971441232799


No 18 
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.36  E-value=0.00046  Score=42.26  Aligned_cols=56  Identities=27%  Similarity=0.335  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             999999999999999839949999998634------2999988755899944899999999928
Q gi|254781147|r   17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGF------AQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        17 ~~~~~~g~~ir~~R~~~gltq~ela~~~gi------s~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      .+-+.|+..++..|...|+||.+++..+|.      |+++|+++|+  -+.+..++.++--.|.
T Consensus         7 ~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~--l~LS~kn~~kLkP~L~   68 (75)
T d1e3oc2           7 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMSKLKPLLE   68 (75)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHH--TCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_conf             9999999999987884365589999999987175025889999997--2457988998899999


No 19 
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=97.33  E-value=0.00055  Score=41.80  Aligned_cols=57  Identities=25%  Similarity=0.333  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             999999999999999983994999999863------42999988755899944899999999928
Q gi|254781147|r   16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG------FAQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        16 ~~~~~~~g~~ir~~R~~~gltq~ela~~~g------is~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      +++-+.|+..++..|...|+||.|++..+|      .|+++|+++|+  -+.+..++.++--.|.
T Consensus         2 L~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~--l~LS~kn~~klkPiL~   64 (72)
T d1au7a2           2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN--LQLSFKNACKLKAILS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT--TCSBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf             58899999999987742686299999999986186555037788885--1547988998899999


No 20 
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.18  E-value=0.00079  Score=40.86  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             999999999999998399499999986342999988755899944899999999928999996
Q gi|254781147|r   18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL   80 (83)
Q Consensus        18 ~~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l   80 (83)
                      -|..+...|...+.++|+|-+++|+.+|.|.-|+...-.|+...+-+...++++.||++-+..
T Consensus        10 ~r~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l~~~L~L~~e~~   72 (86)
T d1dwka1          10 IRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSI   72 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf             699999999999998399899999895988999999984578899999999999749999999


No 21 
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.36  E-value=0.0017  Score=38.90  Aligned_cols=44  Identities=11%  Similarity=0.082  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCC
Q ss_conf             399499999986342999988755899944899999---99992899
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDTP   76 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~---la~al~i~   76 (83)
                      +..|+.|+|+.+|+|.+++|++-||...++-++-.+   .++.+|..
T Consensus         1 k~~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI~~~a~~lgY~   47 (59)
T d1efaa1           1 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYI   47 (59)
T ss_dssp             CCCCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             98889999989797999999997799867999999999999998898


No 22 
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=96.35  E-value=0.0027  Score=37.65  Aligned_cols=43  Identities=9%  Similarity=0.150  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHCCC
Q ss_conf             994999999863429999887558999448999999---9992899
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL---AHTLDTP   76 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l---a~al~i~   76 (83)
                      +.|..|+|+.+|+|.+++|++-||...++-++-.++   ++.||..
T Consensus         1 NvTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~~aa~~lgY~   46 (57)
T d2hsga1           1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYR   46 (57)
T ss_dssp             CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9699999989895999999996898867989999999999998869


No 23 
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.98  E-value=0.0069  Score=35.25  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9999999999999839949999998634299998875589994489
Q gi|254781147|r   19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID   64 (83)
Q Consensus        19 ~~~~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~   64 (83)
                      ...++..|+....+.+++|.++|+.+|+|+|+||++-++....+..
T Consensus        26 ~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~M~~~   71 (94)
T d1ic8a2          26 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQ   71 (94)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHH
T ss_conf             9999999999999868859999999801599999998279985179


No 24 
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.98  E-value=0.0044  Score=36.40  Aligned_cols=42  Identities=12%  Similarity=0.135  Sum_probs=34.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCH
Q ss_conf             4999999863429999887558999448999999---99928999
Q gi|254781147|r   36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIIL---AHTLDTPL   77 (83)
Q Consensus        36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l---a~al~i~~   77 (83)
                      |+.|+|+.+|+|.+++|++-||...++-++-.++   ++.||..+
T Consensus         2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV~~~a~~lgY~p   46 (57)
T d1qpza1           2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSP   46 (57)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             899999998959999999977998568999999999999988897


No 25 
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=95.88  E-value=0.016  Score=33.08  Aligned_cols=59  Identities=15%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             999999999983994999999863429999887558999448999999999289999960
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      +|..++++|++.++-|-++-.-+ +|.+.+-++|...+.++++.|.++++-||+...+.+
T Consensus         3 ig~~lkqir~elnyhqidlysgi-msksiyikveadsrpisveel~kfserlginffeil   61 (65)
T d2awia1           3 IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL   61 (65)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf             00699999998445675887512-201269998448886449999989998376399998


No 26 
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=95.28  E-value=0.023  Score=32.16  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCC
Q ss_conf             99999999839949999998634299998875589994489999999992899999608
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK   82 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~~   82 (83)
                      ..|+..-..+|+|..+|+...|++.+++...-.   .|....=..||++||+++.+++.
T Consensus        12 adI~AaL~krG~sLa~lsr~~gls~stl~naL~---rp~pKgEriIA~aLg~~P~eIWP   67 (74)
T d1nera_          12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANALE---RHWPKGEQIIANALETKPEVIWP   67 (74)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTT---SSCHHHHHHHHHHTTSCHHHHST
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHCCCHHHHCC
T ss_conf             999999999688799999990998789999983---77858999999997859889594


No 27 
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.93  E-value=0.0046  Score=36.29  Aligned_cols=43  Identities=14%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHHCCCH
Q ss_conf             94999999863429999887558999------44899999999928999
Q gi|254781147|r   35 LTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPL   77 (83)
Q Consensus        35 ltq~ela~~~gis~~~is~iE~G~~~------~~~~~l~~la~al~i~~   77 (83)
                      +|.+|+|+.+|+|.+++|++-||...      -+-+.+...++.+|..+
T Consensus         1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~p   49 (59)
T d1uxda_           1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHP   49 (59)
T ss_dssp             CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9799999997969999999984998767579999999999999988796


No 28 
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=93.52  E-value=0.061  Score=29.63  Aligned_cols=41  Identities=22%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999-9839-94999999863429999887558
Q gi|254781147|r   17 RERMIFVNNFRNIR-KEAK-LTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        17 ~~~~~~g~~ir~~R-~~~g-ltq~ela~~~gis~~~is~iE~G   57 (83)
                      .+...++.+++.++ ...| +||.++++.+|+|..+|++.-+-
T Consensus        39 ~E~~~la~R~~ia~~L~~G~~s~reI~~~~gvs~aTItR~s~~   81 (101)
T d1jhga_          39 DEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNS   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999999999999908967999999969875778899999


No 29 
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=93.18  E-value=0.051  Score=30.11  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999983994999999863429999887
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +.-++.+. +.|+|++++|+++|.|+++|++.
T Consensus         9 A~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~   39 (93)
T d1vz0a1           9 ARGYQALL-EMGLTQEEVARRVGKARSTVANA   39 (93)
T ss_dssp             HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999-84999999999985146999999


No 30 
>d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848 {Shewanella oneidensis [TaxId: 70863]}
Probab=92.69  E-value=0.22  Score=26.32  Aligned_cols=48  Identities=10%  Similarity=0.088  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             999999999839949999998634299998875589994489999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA   70 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la   70 (83)
                      +-.++.+|...|+|.+++++..+.|..-+-.||.|....+...-.++.
T Consensus         5 aie~~ylr~slglt~aqv~~l~k~se~dv~aweage~~~~~laqkkll   52 (162)
T d2ox6a1           5 AIEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLL   52 (162)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHC
T ss_conf             687999999707789998887455777755355057767527786450


No 31 
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=91.62  E-value=0.12  Score=27.88  Aligned_cols=34  Identities=12%  Similarity=0.139  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999998399499999986342999988755
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      .+.-++.+. ..|+|++++|+++|.|.++|+++-.
T Consensus        19 ~A~a~~~l~-~~g~s~~eiA~~~G~s~~~V~~~l~   52 (114)
T d1r71a_          19 IADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVT   52 (114)
T ss_dssp             HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred             HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999998-8099899999997772999999999


No 32 
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=91.18  E-value=0.11  Score=28.08  Aligned_cols=27  Identities=11%  Similarity=0.144  Sum_probs=22.8

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999839949999998634299998875
Q gi|254781147|r   29 IRKEAKLTQKEIRNRTGFAQSWISELE   55 (83)
Q Consensus        29 ~R~~~gltq~ela~~~gis~~~is~iE   55 (83)
                      .....|.|..++|+..||+.++|.+|-
T Consensus        18 ~~~~~g~s~~~vA~~lGIs~~tl~~W~   44 (89)
T d2jn6a1          18 YENSDGASLQQIANDLGINRVTLKNWI   44 (89)
T ss_dssp             HTTGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             998299859999999798988999999


No 33 
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=90.03  E-value=0.35  Score=25.12  Aligned_cols=49  Identities=14%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             99999999983994999999863--42999988755899944899999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~g--is~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      +..|..+|+..-||..|-|.-++  ++..+..++|+|...++.+.+..+..
T Consensus         5 ~~ELQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~   55 (120)
T d1s4ka_           5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE   55 (120)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             899999999999759999999965766899999874898998999999999


No 34 
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=89.70  E-value=0.15  Score=27.39  Aligned_cols=31  Identities=10%  Similarity=0.054  Sum_probs=25.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999983994999999863429999887558
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G   57 (83)
                      ++.++ ..|.|..++|...|||+++|.++--.
T Consensus        14 a~~l~-~~G~s~~~iA~~~gVSr~TiYry~pa   44 (47)
T d1ijwc_          14 ISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPA   44 (47)
T ss_dssp             HHHHH-HTTCCHHHHHHHHTCCHHHHHHHSCS
T ss_pred             HHHHH-HCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf             99999-88997999999979699999855775


No 35 
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=89.18  E-value=0.22  Score=26.35  Aligned_cols=33  Identities=9%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999983994999999863429999887
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -+.-++.++..-.+|..|+|+.+|+|.++++++
T Consensus         8 ~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~   40 (71)
T d1z05a1           8 AGRVYKLIDQKGPISRIDLSKESELAPASITKI   40 (71)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999999999859948999999988788789999


No 36 
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.01  E-value=0.59  Score=23.81  Aligned_cols=60  Identities=20%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCC------HHHHHHHHHHHCCCHHH
Q ss_conf             9999999999998399499999986-342999988755899944------89999999992899999
Q gi|254781147|r   20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTIN------IDNMIILAHTLDTPLWK   79 (83)
Q Consensus        20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~~------~~~l~~la~al~i~~~~   79 (83)
                      ..++.+|+...+..+++|+-+|+.+ |.|++++|.+-+....++      ..++.++-..|+.|..+
T Consensus        13 ~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp~~~~~~sg~e~~~rm~~wL~lPe~~   79 (88)
T d2csfa1          13 AAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHE   79 (88)
T ss_dssp             THHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             9999999999999497799999999831807799998089995223177889999999998174888


No 37 
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=87.60  E-value=0.0076  Score=35.02  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.8

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             83994999999863429999887558
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G   57 (83)
                      ++||||+|.|+.+|.|++.||-||+.
T Consensus         3 ~kGltQ~eIA~~LgTSraNIs~IEk~   28 (122)
T d1nr3a_           3 ERGWSQKKIARELKTTRQNVSAIERK   28 (122)
T ss_dssp             CCSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             25677999999977658899999999


No 38 
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=87.40  E-value=0.21  Score=26.50  Aligned_cols=32  Identities=13%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999983994999999863429999887
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ..-++.+|....+|..|+|+.+|+|.++++++
T Consensus         8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~i   39 (70)
T d1z6ra1           8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKI   39 (70)
T ss_dssp             HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999949928999999989499999999


No 39 
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=87.08  E-value=0.31  Score=25.45  Aligned_cols=33  Identities=18%  Similarity=0.124  Sum_probs=27.6

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998399499999986342999988755
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      +.+-.++.-.|+|++|+|+.+|+|.+++...-.
T Consensus        27 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~   59 (71)
T d1rp3a2          27 KLVIQLIFYEELPAKEVAKILETSVSRVSQLKA   59 (71)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999986848999999997989999999999


No 40 
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.91  E-value=0.63  Score=23.64  Aligned_cols=39  Identities=13%  Similarity=0.213  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HCCCCCC
Q ss_conf             999999999983994999999863429999887-----5589994
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL-----ETGKSTI   61 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i-----E~G~~~~   61 (83)
                      +-++|-.+ .+.|+|..++|++.+||.+++++|     |+|...|
T Consensus        19 LR~Riv~~-~~~G~s~r~aA~rf~VS~s~v~k~l~r~reTG~i~P   62 (63)
T d1k78a1          19 VRQRIVEL-AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKP   62 (63)
T ss_dssp             HHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999-995998999999959779999999999997268899


No 41 
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.52  E-value=0.32  Score=25.34  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=25.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999839949999998634299998875589
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK   58 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~   58 (83)
                      |+.+..--.++|.|+|...||+.++||.|-..+
T Consensus        17 i~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK   49 (66)
T d1hlva1          17 IQEVEENPDLRKGEIARRFNIPPSTLSTILKNK   49 (66)
T ss_dssp             HHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred             HHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999980872109999999599764799999879


No 42 
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.11  E-value=0.55  Score=23.98  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC---CC---HHHHHHHHHHHCCC
Q ss_conf             9999999999998399499999986-3429999887558999---44---89999999992899
Q gi|254781147|r   20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST---IN---IDNMIILAHTLDTP   76 (83)
Q Consensus        20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~---~~---~~~l~~la~al~i~   76 (83)
                      ..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-..   .+   -++..++-.-|+-|
T Consensus        12 ~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~PKPW~kl~~~gR~~y~RM~~WL~~p   75 (87)
T d1x2la1          12 AEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDE   75 (87)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             9999999999999498799999999830847899998489996886587789999999982687


No 43 
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=85.65  E-value=0.47  Score=24.39  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=27.7

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998399499999986342999988755
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      +.+-.+|.-.|||++|+|+.+|+|++++...-+
T Consensus        22 R~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~   54 (106)
T d1s7oa_          22 MNYIELYYADDYSLAEIADEFGVSRQAVYDNIK   54 (106)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999898999199999999998969999999999


No 44 
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.46  E-value=0.97  Score=22.51  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCC------CHHHHHHHHHHHCCCHHH
Q ss_conf             999999999998399499999986-34299998875589994------489999999992899999
Q gi|254781147|r   21 IFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTI------NIDNMIILAHTLDTPLWK   79 (83)
Q Consensus        21 ~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~~------~~~~l~~la~al~i~~~~   79 (83)
                      .++.+|+...+..+++|+-+|+.+ |.|++++|.+-+....+      .-.++.++-.-|+.|-.+
T Consensus         5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~pkpw~~ls~sgre~f~Rm~~wL~lP~~~   70 (83)
T d2o4aa1           5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAE   70 (83)
T ss_dssp             THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             999999999999497799999999831807799998189994154087779999999998181988


No 45 
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=84.74  E-value=0.84  Score=22.90  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9999999999998--399499999986342999988755899944899999999
Q gi|254781147|r   20 MIFVNNFRNIRKE--AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        20 ~~~g~~ir~~R~~--~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      .++..-++.+.+.  .+.|..++|+.+|||.+++..+...+-..-...+..+.+
T Consensus        11 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~sKe~L~~~~~~~~~~   64 (78)
T d2o7ta1          11 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFN   64 (78)
T ss_dssp             HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999999999998491406799999883998879999886999999999999999


No 46 
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=84.58  E-value=0.46  Score=24.44  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=23.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             83994999999863429999887558
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G   57 (83)
                      ...+|..|+|+.+|+|...+++||+-
T Consensus        26 ~~~~tl~eIa~~lgiS~erVrqi~~~   51 (61)
T d1ku3a_          26 GREHTLEEVGAYFGVTRERIRQIENK   51 (61)
T ss_dssp             SSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99778999889979889999999999


No 47 
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=84.42  E-value=0.43  Score=24.59  Aligned_cols=29  Identities=17%  Similarity=0.412  Sum_probs=25.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|+.+++ ..+|..|+|+.+|+|.++++++
T Consensus         4 Il~~i~~-~pisr~eLa~~~gls~~TVs~~   32 (62)
T d2hoea1           4 ILKRIMK-SPVSRVELAEELGLTKTTVGEI   32 (62)
T ss_dssp             SHHHHHH-SCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHH-CCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999997-8969999999989399999999


No 48 
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=82.55  E-value=0.37  Score=24.99  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9949999998634299998875
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISELE   55 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~iE   55 (83)
                      .+||+|+|..+|+|+.+++++-
T Consensus        29 ~lt~~~lA~~~G~sRetvsr~L   50 (69)
T d1i5za1          29 KITRQEIGQIVGCSRETVGRIL   50 (69)
T ss_dssp             ECCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHH
T ss_conf             7899999989799799999999


No 49 
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.38  E-value=0.98  Score=22.48  Aligned_cols=58  Identities=14%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC---CC---HHHHHHHHHHHCCC
Q ss_conf             99999999999998399499999986-3429999887558999---44---89999999992899
Q gi|254781147|r   19 RMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKST---IN---IDNMIILAHTLDTP   76 (83)
Q Consensus        19 ~~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~~~---~~---~~~l~~la~al~i~   76 (83)
                      -..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-..   .+   -++..++-.-|+-|
T Consensus        29 T~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~PKPW~kl~~~gR~~y~RM~~wL~~p   93 (111)
T d1wh8a_          29 TYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDP   93 (111)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             99999999999998583299999999800827899998389990676688889999999981587


No 50 
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=82.37  E-value=0.41  Score=24.75  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999887
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i   54 (83)
                      ..+||+|+|..+|+|+.+++++
T Consensus        29 ~~lt~~elA~~~g~sretvsr~   50 (80)
T d3e5ua1          29 MPLSQKSIGEITGVHHVTVSRV   50 (80)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHH
T ss_conf             3799999999988778899999


No 51 
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=81.99  E-value=0.55  Score=23.98  Aligned_cols=30  Identities=7%  Similarity=0.119  Sum_probs=23.7

Q ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983-994999999863429999887
Q gi|254781147|r   25 NFRNIRKEA-KLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~-gltq~ela~~~gis~~~is~i   54 (83)
                      -+..+-... .+|+.++|+.+|+++++++++
T Consensus        26 iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~   56 (109)
T d2d1ha1          26 VLLKMVEIEKPITSEELADIFKLSKTTVENS   56 (109)
T ss_dssp             HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999997698988999999988567699999


No 52 
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=81.91  E-value=1.1  Score=22.23  Aligned_cols=34  Identities=6%  Similarity=0.121  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999839-94999999863429999887
Q gi|254781147|r   21 IFVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        21 ~~g~~ir~~R~~~g-ltq~ela~~~gis~~~is~i   54 (83)
                      ..-.-+..+....+ +|..+||+.+|||..+|.+.
T Consensus         8 R~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rd   42 (65)
T d1j5ya1           8 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQD   42 (65)
T ss_dssp             HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999998599785999999979899999999


No 53 
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=81.66  E-value=0.93  Score=22.63  Aligned_cols=44  Identities=11%  Similarity=0.093  Sum_probs=31.3

Q ss_pred             HHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             9999-9999998399499999986342999988755899944899
Q gi|254781147|r   22 FVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN   65 (83)
Q Consensus        22 ~g~~-ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~   65 (83)
                      +++. +.....-..+|..++|+.+|+|.++|.++=+.-.--+...
T Consensus        23 ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e   67 (83)
T d2o3fa1          23 LADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQD   67 (83)
T ss_dssp             HHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf             999998299999883199999997989989999999958998999


No 54 
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=81.48  E-value=0.43  Score=24.63  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             CCCHHHHHHHHHHH-HHHHHHH------------HCCC-CCCCHHHHHHHHHHHC
Q ss_conf             99499999986342-9999887------------5589-9944899999999928
Q gi|254781147|r   34 KLTQKEIRNRTGFA-QSWISEL------------ETGK-STINIDNMIILAHTLD   74 (83)
Q Consensus        34 gltq~ela~~~gis-~~~is~i------------E~G~-~~~~~~~l~~la~al~   74 (83)
                      .+||+|+|..+|+| +.+++++            .+++ ..++.+.|.++|.-++
T Consensus        31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~~~~i~I~D~~~L~~~A~~~d   85 (100)
T d2bgca1          31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLD   85 (100)
T ss_dssp             CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECHHHHHHHHCCCC
T ss_conf             6699999988387448899999999987978897599999928999999864360


No 55 
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=81.28  E-value=0.45  Score=24.50  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999887
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i   54 (83)
                      ..+||+|+|..+|+|+.+++++
T Consensus        29 ~~~t~~eiA~~lG~sretvsr~   50 (80)
T d1ft9a1          29 VDFTVEEIANLIGSSRQTTSTA   50 (80)
T ss_dssp             ECCCHHHHHHHHCSCHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHH
T ss_conf             3789999999979889999999


No 56 
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.17  E-value=1  Score=22.44  Aligned_cols=40  Identities=10%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf             99999999999998399499999986-34299998875589
Q gi|254781147|r   19 RMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGK   58 (83)
Q Consensus        19 ~~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~   58 (83)
                      -..++.+|+...+..+++|+-+|+.+ |.|+.++|.+-+.-
T Consensus        19 T~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~~P   59 (101)
T d1wh6a_          19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRP   59 (101)
T ss_dssp             HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             99999999999999497699999999810817899998479


No 57 
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=80.96  E-value=0.46  Score=24.42  Aligned_cols=22  Identities=14%  Similarity=0.034  Sum_probs=20.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999887
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i   54 (83)
                      ..+||+|+|..+|+++.++|+.
T Consensus        26 i~lt~~elA~~lg~sr~tvsr~   47 (73)
T d1zyba1          26 FKVKMDDLARCLDDTRLNISKT   47 (73)
T ss_dssp             EECCHHHHHHHHTSCHHHHHHH
T ss_pred             EECCHHHHHHHHCCCHHHHHHH
T ss_conf             5069999998979889999999


No 58 
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=80.94  E-value=0.55  Score=24.00  Aligned_cols=57  Identities=14%  Similarity=0.062  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHCCC
Q ss_conf             9999999999998399499999986-34299998875589-----994489999999992899
Q gi|254781147|r   20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGK-----STINIDNMIILAHTLDTP   76 (83)
Q Consensus        20 ~~~g~~ir~~R~~~gltq~ela~~~-gis~~~is~iE~G~-----~~~~~~~l~~la~al~i~   76 (83)
                      ..++..|+...+..+++|+-+|+.+ |.|++++|.+-+.-     ....-++..++-.-|+-|
T Consensus         5 ~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~kPKPW~~l~~gre~y~RM~~wL~~p   67 (80)
T d1s7ea2           5 KEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP   67 (80)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTTSCCTTCCCSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHCCH
T ss_conf             999999999999959879999999974380789998839997032132569999999998387


No 59 
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=80.74  E-value=0.44  Score=24.53  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH-----HCC-------C-CCCCHHHHHHHHH
Q ss_conf             3994999999863429999887-----558-------9-9944899999999
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL-----ETG-------K-STINIDNMIILAH   71 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i-----E~G-------~-~~~~~~~l~~la~   71 (83)
                      ..+||+|+|..+|+|+.+++++     +.|       . .-.+.+.|.++|+
T Consensus        28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~~~i~I~d~~~L~~~a~   79 (81)
T d2gaua1          28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTAR   79 (81)
T ss_dssp             CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHH
T ss_conf             0689999999979989999999999998997896399999838999999985


No 60 
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=80.50  E-value=0.81  Score=22.98  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=26.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999839949999998634299998875
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELE   55 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE   55 (83)
                      .+-.+|.-.|+|..|+|+.+|+|++++...-
T Consensus        25 ~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l   55 (106)
T d1xsva_          25 NYLELFYLEDYSLSEIADTFNVSRQAVYDNI   55 (106)
T ss_dssp             HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999999908759999999895999999999


No 61 
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=80.08  E-value=0.72  Score=23.28  Aligned_cols=32  Identities=9%  Similarity=0.137  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999983994999999863429999887
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -..|...-.+.++.+.+.|+.+|||++++.+-
T Consensus        22 r~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rk   53 (60)
T d1umqa_          22 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRI   53 (60)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999996685999999989889999999


No 62 
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=79.41  E-value=0.93  Score=22.64  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999983994999999863429999887
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ..-|..+....+.|+.++|+.+|++.++++++
T Consensus        33 ~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~   64 (139)
T d2a61a1          33 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGL   64 (139)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             99999999769989999999839881442699


No 63 
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=79.34  E-value=0.35  Score=25.16  Aligned_cols=55  Identities=9%  Similarity=0.018  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             9999999998399499999986342999988755899944899999999928999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL   77 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~   77 (83)
                      +..+-.-+--.++|..++|+.+|+|.+++.++...+...-...+..+...+.-.+
T Consensus        13 a~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l~~~~~~~~~~~~~~~~   67 (79)
T d2fbqa1          13 AEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASL   67 (79)
T ss_dssp             HHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998693504099999998828557878776999999977999999999999


No 64 
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=79.05  E-value=1  Score=22.36  Aligned_cols=31  Identities=13%  Similarity=0.035  Sum_probs=26.9

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999983994999999863429999887
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +.+-.+|.-.|+|.+|+|+.+|+|.+++...
T Consensus        24 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~   54 (68)
T d1or7a1          24 RMAITLRELDGLSYEEIAAIMDCPVGTVRSR   54 (68)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999990989999999989499999999


No 65 
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=79.00  E-value=0.55  Score=23.98  Aligned_cols=31  Identities=6%  Similarity=0.102  Sum_probs=25.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999983994999999863429999887
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +-|..+....-+|.+|||+.+|||+++|.+.
T Consensus         9 ~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~   39 (63)
T d1biaa1           9 KLIALLANGEFHSGEQLGETLGMSRAAINKH   39 (63)
T ss_dssp             HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999789587999999989399999999


No 66 
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=78.88  E-value=1.2  Score=21.97  Aligned_cols=32  Identities=3%  Similarity=-0.052  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999983994999999863429999887
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -..|+.+-+..+..+.+.|+.+||+++++.+-
T Consensus        51 ~~~i~~aL~~~~gn~~~aA~~LGisR~tL~~k   82 (89)
T d1etxa_          51 QPLLDMVMQYTRGNATRAALMMGINRGTLRKK   82 (89)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999992996999999989789999999


No 67 
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=78.87  E-value=1.2  Score=22.01  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=27.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999983994999999863429999887558
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G   57 (83)
                      ..|+.++ +.|++-.++|+.+||+++++.++-+.
T Consensus         9 ~~V~~L~-~~G~gat~IAk~lgI~R~SVYR~L~~   41 (43)
T d1gdta1           9 DAVLNMW-QQGLGASHISKTMNIARSTVYKVINE   41 (43)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999-94898999999979879999999860


No 68 
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=78.82  E-value=0.34  Score=25.19  Aligned_cols=54  Identities=13%  Similarity=0.127  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             999999999839949999998634299998875589994489999999992899
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP   76 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~   76 (83)
                      +..+-.-+--.++|..++|+.+|+|.+++..+...+...-...+..+.+.+.-.
T Consensus        13 a~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~   66 (74)
T d1v7ba1          13 AIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKE   66 (74)
T ss_dssp             HHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999859563579999988496922385507999999999999999999999


No 69 
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=78.58  E-value=0.44  Score=24.58  Aligned_cols=53  Identities=9%  Similarity=0.029  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999999983994999999863429999887558999448999999999289
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT   75 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i   75 (83)
                      +..+-.-+--.++|..++|+.+|+|++++..+..++...=...+..+.+.+.-
T Consensus        13 a~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~   65 (74)
T d2g7sa1          13 ARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEA   65 (74)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999985915067999999878184169888839999999999999999999


No 70 
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=78.52  E-value=0.46  Score=24.45  Aligned_cols=58  Identities=14%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             9999999998399499999986342999988755899944899999999928999996
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL   80 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l   80 (83)
                      +..+-.-.--.++|..++|+.+|+|++++..+...+...-...+..+.+.+.-.+.+.
T Consensus        12 a~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~~~~~~~~~~~~~~~   69 (75)
T d2id6a1          12 AVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENF   69 (75)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998393516799999884998889988887999999999999999999999999


No 71 
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=78.38  E-value=1.4  Score=21.58  Aligned_cols=54  Identities=9%  Similarity=0.081  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999999999--839949999998634299998875589994489999999992
Q gi|254781147|r   20 MIFVNNFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        20 ~~~g~~ir~~R~--~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      .++..-++-+..  -.++|..++|+.+|+|.+++.++..++...=...+....+.+
T Consensus         8 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~~K~~l~~~~~~~~~~~~   63 (72)
T d1pb6a1           8 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIW   63 (72)
T ss_dssp             HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999859250679999998697867999888699999999999999999


No 72 
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=78.18  E-value=0.37  Score=25.03  Aligned_cols=56  Identities=14%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999999999---839949999998634299998875589994489999999992899
Q gi|254781147|r   21 IFVNNFRNIRK---EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP   76 (83)
Q Consensus        21 ~~g~~ir~~R~---~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~   76 (83)
                      ++..-+.-+-+   -.++|..++|+.+|+|++++..+..++...-...+..+.+-+.-|
T Consensus         7 Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~~~~   65 (68)
T d1z0xa1           7 IIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQEP   65 (68)
T ss_dssp             HHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999987679231679999998772656899962999999999999999654534


No 73 
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=78.09  E-value=0.36  Score=25.04  Aligned_cols=47  Identities=4%  Similarity=0.119  Sum_probs=35.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             83994999999863429999887558999448999999999289999
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW   78 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~   78 (83)
                      -.+.|..++|+.+|+|++++.++..++...-...+....+.+.-.+.
T Consensus        24 ~~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~   70 (77)
T d2gfna1          24 ISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYR   70 (77)
T ss_dssp             GGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             04057999999878887799888839999999999999999999999


No 74 
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=77.94  E-value=0.87  Score=22.80  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=23.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             83994999999863429999887558
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G   57 (83)
                      ...+|++++|+..|+|+..|.+||..
T Consensus        23 ~~~~tl~eI~~~lgiSrerVrqie~~   48 (68)
T d2p7vb1          23 NTDYTLEEVGKQFDVTRERIRQIEAK   48 (68)
T ss_dssp             SSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             98688999999979789999999999


No 75 
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=77.49  E-value=1.4  Score=21.49  Aligned_cols=32  Identities=9%  Similarity=0.229  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999983994999999863429999887
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +.-+..+...-..|+.++|+.+|+++++++.+
T Consensus        23 ~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~   54 (109)
T d1sfxa_          23 VRIYSLLLERGGMRVSEIARELDLSARFVRDR   54 (109)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf             99999988238998999999857983559999


No 76 
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=77.34  E-value=1.3  Score=21.72  Aligned_cols=49  Identities=14%  Similarity=-0.029  Sum_probs=36.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             9999998399499999986342999988755899944899999999928
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      +-.-.--.+.|..++|+.+|||++++..+..++...-...+......+.
T Consensus        13 l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~~~~   61 (72)
T d1vi0a1          13 VIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFI   61 (72)
T ss_dssp             HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9998590415599999987949879988883999999999999999999


No 77 
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=77.13  E-value=0.71  Score=23.33  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH------------CCC-CCCCHHHHHHHHHH
Q ss_conf             39949999998634299998875------------589-99448999999999
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISELE------------TGK-STINIDNMIILAHT   72 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~iE------------~G~-~~~~~~~l~~la~a   72 (83)
                      ..+||+|+|+.+|+++.+++++-            +|. ...+.+.|..+++.
T Consensus        28 i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~~~~~i~I~d~~~L~~~a~~   80 (82)
T d2zcwa1          28 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAES   80 (82)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTS
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHH
T ss_conf             05899999999898899999999999989988964999998489999999874


No 78 
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=76.87  E-value=1  Score=22.39  Aligned_cols=30  Identities=17%  Similarity=0.452  Sum_probs=25.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999998399499999986342999988
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE   53 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~   53 (83)
                      .-|..+.....+|..++|+.+|+|.+++++
T Consensus         9 ~IL~~L~~n~r~s~~~iA~~lgis~~tv~~   38 (63)
T d2cfxa1           9 NIIEELKKDSRLSMRELGRKIKLSPPSVTE   38 (63)
T ss_dssp             HHHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999999983999999999998968789999


No 79 
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=76.40  E-value=0.72  Score=23.29  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=26.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC-CCC-----------CHHH-----HHHHHHHHCCCHHHH
Q ss_conf             949999998634299998875589-994-----------4899-----999999928999996
Q gi|254781147|r   35 LTQKEIRNRTGFAQSWISELETGK-STI-----------NIDN-----MIILAHTLDTPLWKL   80 (83)
Q Consensus        35 ltq~ela~~~gis~~~is~iE~G~-~~~-----------~~~~-----l~~la~al~i~~~~l   80 (83)
                      |+..|+|+.+|||.++|.-||+-. -.|           +...     +.+.++.+|+++.+.
T Consensus         1 m~Ige~A~~~gvs~~TlR~Ye~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI   63 (127)
T d1q06a_           1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEES   63 (127)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             978999999892999999999927988876577676145199999999999999869999999


No 80 
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=76.27  E-value=1.2  Score=21.92  Aligned_cols=30  Identities=17%  Similarity=0.105  Sum_probs=25.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|..+-+.-++|+.++|+.+|+++++++++
T Consensus        37 iL~~l~~~~~~t~~~La~~l~i~~~~vs~~   66 (140)
T d2etha1          37 AFLYVALFGPKKMKEIAEFLSTTKSNVTNV   66 (140)
T ss_dssp             HHHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999999869959999999989698799999


No 81 
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=76.26  E-value=0.54  Score=24.02  Aligned_cols=53  Identities=8%  Similarity=0.087  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             99999999998399499999986342999988755899944899999999928
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      +-.-+.-+...-++|..++|+.+|++++++..+..++...-...+..+..-++
T Consensus         7 l~aa~~l~~~~G~~ti~~Ia~~agvs~~~iY~~F~~K~~L~~~v~~~~~~~~~   59 (65)
T d2g7ga1           7 AEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREID   59 (65)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999786797899999885706131311589999999999999999988


No 82 
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=76.25  E-value=2.1  Score=20.50  Aligned_cols=32  Identities=6%  Similarity=0.101  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999983994999999863429999887
Q gi|254781147|r   22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        22 ~g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +-.+|-.+ .+.|++..++|+..|||.+++++|
T Consensus        21 lR~rIv~~-~~~G~s~r~iA~~~~VS~~tV~k~   52 (123)
T d1pdnc_          21 IRLKIVEM-AADGIRPCVISRQLRVSHGCVSKI   52 (123)
T ss_dssp             HHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHH-HHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999-980489999999989699999999


No 83 
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=75.91  E-value=0.64  Score=23.57  Aligned_cols=51  Identities=10%  Similarity=0.034  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999999839949999998634299998875589994489999999992
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      +..+-.-.--.++|..++|+.+|+|.+++..+..++-..-...+....+.+
T Consensus        14 a~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~   64 (75)
T d2hyja1          14 AAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDF   64 (75)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             999999759030769999998890989998888299999999999999999


No 84 
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=75.73  E-value=0.7  Score=23.36  Aligned_cols=47  Identities=11%  Similarity=0.118  Sum_probs=29.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCC------------CCCCCHHH-----HHHHHHHHCCCHHHH
Q ss_conf             994999999863429999887558------------99944899-----999999928999996
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISELETG------------KSTINIDN-----MIILAHTLDTPLWKL   80 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~iE~G------------~~~~~~~~-----l~~la~al~i~~~~l   80 (83)
                      .+|..|+|+.+|+|.++|.-||.-            -+.-+.+.     ..+.++.+|+|+.+.
T Consensus         2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI   65 (109)
T d1r8da_           2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEI   65 (109)
T ss_dssp             CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             6229999999896999999998868958765577650456299999999999999869999999


No 85 
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=75.31  E-value=0.73  Score=23.25  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=24.7

Q ss_pred             HHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999------83994999999863429999887
Q gi|254781147|r   23 VNNFRNIRK------EAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        23 g~~ir~~R~------~~gltq~ela~~~gis~~~is~i   54 (83)
                      ..-|+.++.      ..++|+.++|+.+|+++++++++
T Consensus         4 ~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~   41 (85)
T d3ctaa1           4 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRI   41 (85)
T ss_dssp             HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999999826015899988999999988788789999


No 86 
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=74.30  E-value=1.1  Score=22.31  Aligned_cols=30  Identities=7%  Similarity=0.087  Sum_probs=25.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|..+....|+|+.++|+.++++.++++++
T Consensus        34 iL~~i~~~~~~t~~~la~~l~i~~~tvs~~   63 (144)
T d1lj9a_          34 YLVRVCENPGIIQEKIAELIKVDRTTAARA   63 (144)
T ss_dssp             HHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999998289989999999878247169999


No 87 
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=74.22  E-value=0.88  Score=22.77  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             399499999986342999988755
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~iE~   56 (83)
                      -.-||+++|+-+|||+.++.+|-+
T Consensus        35 ekktqeqiAeelGisr~tLyrWrt   58 (120)
T d2ao9a1          35 EKRTQDEMANELGINRTTLWEWRT   58 (120)
T ss_dssp             CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             341499999995801888988760


No 88 
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=74.20  E-value=1.2  Score=22.03  Aligned_cols=49  Identities=10%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             9999998399499999986342999988755899944899999999928
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD   74 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~   74 (83)
                      +-.-.--.++|..++|+.+|||++++..+..++...-...+..+.+-+.
T Consensus        15 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~   63 (73)
T d1t56a1          15 LLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQAD   63 (73)
T ss_dssp             HHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9997591507799999986988889988884999999999999999999


No 89 
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=74.11  E-value=1.5  Score=21.42  Aligned_cols=48  Identities=8%  Similarity=-0.139  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             999999999839949999998634299998875589994489999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA   70 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la   70 (83)
                      +..+-.-.--.++|..++|+.+|+|++++..+..++...-...+....
T Consensus        11 a~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l~~~~~~~~~   58 (68)
T d2d6ya1          11 AVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKM   58 (68)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999859250679999988784662898887499999999999999


No 90 
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=73.91  E-value=1.6  Score=21.18  Aligned_cols=43  Identities=14%  Similarity=0.147  Sum_probs=30.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHC
Q ss_conf             83994999999863429999887558-----99944899999999928
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETG-----KSTINIDNMIILAHTLD   74 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G-----~~~~~~~~l~~la~al~   74 (83)
                      ...+|+.++|+.+|||+..+.+||+.     +.......|..+.+.++
T Consensus        36 ~~~~tl~eI~~~lgiSrERVRQie~~al~kLr~~~~~~~L~~~l~~~~   83 (87)
T d1ttya_          36 GKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMD   83 (87)
T ss_dssp             SSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf             996889999999598899999999999999867377899999998631


No 91 
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=73.49  E-value=0.9  Score=22.70  Aligned_cols=30  Identities=10%  Similarity=0.144  Sum_probs=25.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|..+....++|+.++|+.+|+++++++++
T Consensus        38 vL~~l~~~~~~t~~~La~~~~i~~~~vsr~   67 (137)
T d1z91a1          38 ALLLLWEHETLTVKKMGEQLYLDSGTLTPM   67 (137)
T ss_dssp             HHHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999987589998999999979688889799


No 92 
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=73.48  E-value=1  Score=22.34  Aligned_cols=29  Identities=10%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999983994999999863429999887
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      |..+-...|+|+.++|+.++++.+++|++
T Consensus        42 L~~l~~~~~~t~~~la~~l~~~~~~vsr~   70 (141)
T d1lnwa_          42 LKLIDEQRGLNLQDLGRQMCRDKALITRK   70 (141)
T ss_dssp             HHHHHSSTTCBHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99999879989999999978457379999


No 93 
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=72.99  E-value=1.7  Score=21.05  Aligned_cols=29  Identities=17%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998399499999986342999988
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISE   53 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~   53 (83)
                      -|..+.+.-.+|..++|+.+|+|.+++.+
T Consensus         8 Il~~L~~n~r~s~~~lA~~~gls~~~v~~   36 (60)
T d1i1ga1           8 ILEILEKDARTPFTEIAKKLGISETAVRK   36 (60)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             99999884999999999998929999999


No 94 
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=72.86  E-value=2.2  Score=20.44  Aligned_cols=29  Identities=10%  Similarity=0.231  Sum_probs=22.6

Q ss_pred             HHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998--3994999999863429999887
Q gi|254781147|r   26 FRNIRKE--AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        26 ir~~R~~--~gltq~ela~~~gis~~~is~i   54 (83)
                      |..+...  .++|+.++|+.+|++.++++++
T Consensus        35 L~~l~~~~~~~it~~ela~~~~~~~~~vs~~   65 (135)
T d3broa1          35 IDYLSRNKNKEVLQRDLESEFSIKSSTATVL   65 (135)
T ss_dssp             HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999970799999999999989688689999


No 95 
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=72.59  E-value=1.7  Score=21.02  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=25.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998399499999986342999988
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISE   53 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~   53 (83)
                      -|..+...-.+|..++|+.+|+|.+++..
T Consensus        10 IL~~L~~~~r~s~~eiA~~l~ls~~~v~~   38 (63)
T d2cg4a1          10 ILEALMGNARTAYAELAKQFGVSPETIHV   38 (63)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             99999983899999999998939999999


No 96 
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=71.84  E-value=1.5  Score=21.44  Aligned_cols=30  Identities=10%  Similarity=-0.158  Sum_probs=25.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|..+....++|+.++|+.++++.++++++
T Consensus        46 vL~~l~~~~~~t~~~la~~~~l~~~tvs~~   75 (162)
T d2fxaa1          46 ILWIAYQLNGASISEIAKFGVMHVSTAFNF   75 (162)
T ss_dssp             HHHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             996521189918999999976994031998


No 97 
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=71.77  E-value=1.5  Score=21.34  Aligned_cols=49  Identities=10%  Similarity=-0.053  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9999999998399499999986342999988755899944899999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      +..+-.-+--.++|..++|+.+|||.+++..+..++-..-...+.....
T Consensus        10 a~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~K~~L~~~~~~~~~~   58 (71)
T d1jt6a1          10 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEES   58 (71)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999998591406799999987858759988884999999999999999


No 98 
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=71.54  E-value=3.1  Score=19.49  Aligned_cols=45  Identities=7%  Similarity=-0.011  Sum_probs=31.8

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             999999839949999998634299998875589994489999999
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA   70 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la   70 (83)
                      +-.-.--.+.|..++|+.+|||++++..+...+...=...+..+.
T Consensus        14 l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F~~K~~L~~~~~~~~~   58 (72)
T d2g3ba1          14 AIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYIN   58 (72)
T ss_dssp             HHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999839240779999988596977999888399999999999999


No 99 
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=71.18  E-value=2.6  Score=20.02  Aligned_cols=51  Identities=10%  Similarity=0.056  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999999839949999998634299998875589994489999999992
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      +..+-.-+--.++|..++|+.+|||.+++.++..++...-...+....+.+
T Consensus        18 a~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~k~~L~~~~~~~~~~~~   68 (79)
T d2oi8a1          18 AWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQ   68 (79)
T ss_dssp             HHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             999999869030679999998679977445516999999999999999999


No 100
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=70.98  E-value=2  Score=20.60  Aligned_cols=30  Identities=17%  Similarity=0.190  Sum_probs=25.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -+..+....++|+.++|+.++++.++++++
T Consensus        39 vL~~l~~~~~~t~~ela~~~~i~~~~vs~~   68 (138)
T d1jgsa_          39 VLCSIRCAACITPVELKKVLSVDLGALTRM   68 (138)
T ss_dssp             HHHHHHHHSSBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             988687180989999999978788579999


No 101
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=70.74  E-value=0.94  Score=22.59  Aligned_cols=46  Identities=9%  Similarity=-0.012  Sum_probs=33.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9999998399499999986342999988755899944899999999
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      +-.-.--.++|..++|+.+|||++++..+..++...-...+....+
T Consensus        23 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~   68 (81)
T d1rkta1          23 VFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLD   68 (81)
T ss_dssp             HHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9998592517799999986949889988884999999999999999


No 102
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=70.47  E-value=1.5  Score=21.45  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=25.7

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999983994999999863429999887
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      .-|..+....+.|+.++|+.+++++++++++
T Consensus        39 ~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~   69 (143)
T d1s3ja_          39 FVLASLKKHGSLKVSEIAERMEVKPSAVTLM   69 (143)
T ss_dssp             HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999779989999999989698899999


No 103
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=70.06  E-value=0.94  Score=22.59  Aligned_cols=47  Identities=11%  Similarity=0.032  Sum_probs=30.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCC-CCCC-----------------HHHHHHHHHHHCCCHHHH
Q ss_conf             9949999998634299998875589-9944-----------------899999999928999996
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISELETGK-STIN-----------------IDNMIILAHTLDTPLWKL   80 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~iE~G~-~~~~-----------------~~~l~~la~al~i~~~~l   80 (83)
                      -+|..|+|+.+|||..+|.-||+-. -.|.                 .-...+.++.+|+|+.+.
T Consensus         3 yytI~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g~sl~eI   67 (118)
T d1r8ea1           3 YYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEM   67 (118)
T ss_dssp             EEEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             60199999998969999999998588553453699994035488999999999999969999999


No 104
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=69.91  E-value=0.81  Score=22.99  Aligned_cols=50  Identities=14%  Similarity=-0.013  Sum_probs=35.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999839949999998634299998875589994489999999992
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      ..+-.-.--.++|..++|+.+|+|++++.++..++...=...+....+-+
T Consensus        10 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~   59 (70)
T d2gena1          10 LACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQY   59 (70)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99999859240879999998795877999898799999999999999999


No 105
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=69.90  E-value=2.1  Score=20.55  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=25.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999998399499999986342999988
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE   53 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~   53 (83)
                      +-|..+.+.-.+|..++|+.+|+|.+++..
T Consensus         7 ~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~   36 (60)
T d2cyya1           7 KIIKILQNDGKAPLREISKITGLAESTIHE   36 (60)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999999982899999999998939999999


No 106
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=69.86  E-value=1.1  Score=22.17  Aligned_cols=44  Identities=16%  Similarity=0.076  Sum_probs=31.4

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             99999839949999998634299998875589994489999999
Q gi|254781147|r   27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA   70 (83)
Q Consensus        27 r~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la   70 (83)
                      -.-.--.++|..++|+.+|+|++++..+..++...=...+..+.
T Consensus        19 ~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L~~~~~~~~~   62 (68)
T d2id3a1          19 LAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMA   62 (68)
T ss_dssp             HHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99849340779999999786887999998599999999999999


No 107
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=69.04  E-value=1.7  Score=21.13  Aligned_cols=34  Identities=18%  Similarity=0.091  Sum_probs=27.2

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999998399499999986342999988755899944
Q gi|254781147|r   27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN   62 (83)
Q Consensus        27 r~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~   62 (83)
                      ..+-.+.|  |...|+.+|+.++.||+.-+..+++.
T Consensus         8 ~dyv~~~G--QaKaA~~LGv~Q~AIsKAira~R~I~   41 (61)
T d1d1la_           8 KDYAMRFG--QTKTAKDLGVYQSAINKAIHAGRKIF   41 (61)
T ss_dssp             HHHHHHHC--HHHHHHHHTCCTHHHHHHHHTTCCEE
T ss_pred             HHHHHHHC--HHHHHHHCCCCHHHHHHHHHCCCEEE
T ss_conf             99999977--59899982964889999996388279


No 108
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=68.14  E-value=2  Score=20.67  Aligned_cols=30  Identities=10%  Similarity=0.280  Sum_probs=25.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999983994999999863429999887
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|..+...-++|+.++|+.+|++.++++++
T Consensus        35 vL~~l~~~~~~t~~~la~~~~i~~~~vs~~   64 (136)
T d2fbia1          35 VIRILRQQGEMESYQLANQACILRPSMTGV   64 (136)
T ss_dssp             HHHHHHHHCSEEHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999999769989999999988789889999


No 109
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=67.82  E-value=1.6  Score=21.22  Aligned_cols=30  Identities=7%  Similarity=0.132  Sum_probs=26.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999998399499999986342999988
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE   53 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~   53 (83)
                      .-|+..-+..+..+.+.|+.+||+++++.+
T Consensus        54 ~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~   83 (91)
T d1ntca_          54 TLLTTALRHTQGHKQEAARLLGWGAATLTA   83 (91)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf             999999999599599999997988999999


No 110
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=67.41  E-value=2.4  Score=20.22  Aligned_cols=46  Identities=13%  Similarity=0.028  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             9999999998399499999986342999988755899944899999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII   68 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~   68 (83)
                      +..+-.-.--.++|..++|+.+|+|.+++..+..++...-...+..
T Consensus         8 A~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~K~~L~~~~~~~   53 (62)
T d2vkva1           8 ALELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAVE   53 (62)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999998393517899999880988889998887999999999999


No 111
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=67.37  E-value=2.6  Score=19.93  Aligned_cols=40  Identities=20%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             983994999999863429999887558999448999999999289999960
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      .....|+.|+|+.+|+|..++++.           ...+.+.|++++.++|
T Consensus        59 ~~~~~t~~eIa~~~~is~~ti~k~-----------yk~i~~~L~l~~~~~~   98 (98)
T d1aisb1          59 LKVPRTLDEIADIARVDKKEIGRS-----------YRFIARNLNLTPKKLF   98 (98)
T ss_dssp             HTCCCCHHHHHHHTTSCHHHHHHH-----------HHHHHHHTTCCTTTTC
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHH-----------HHHHHHHCCCCCCCCC
T ss_conf             399988999999979889999999-----------9999998198810059


No 112
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=66.97  E-value=3.8  Score=19.01  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             99999999983994999999863429999887558999448999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM   66 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l   66 (83)
                      +..+-.-+--.+.|..++|+++|+|++++.++..++...-...+
T Consensus        13 a~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~   56 (69)
T d2fq4a1          13 SYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGF   56 (69)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             99999983924077999999978588799999879999999999


No 113
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=66.60  E-value=2.6  Score=19.96  Aligned_cols=29  Identities=17%  Similarity=0.334  Sum_probs=23.0

Q ss_pred             HHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998-3994999999863429999887
Q gi|254781147|r   26 FRNIRKE-AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        26 ir~~R~~-~gltq~ela~~~gis~~~is~i   54 (83)
                      |..+... .++|+.++|+.+++++++++++
T Consensus        34 L~~l~~~~~~~t~~~la~~~~~~~~~vs~~   63 (137)
T d2fbha1          34 LLHLARHRDSPTQRELAQSVGVEGPTLARL   63 (137)
T ss_dssp             HHHHHHCSSCCBHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999987699976999999989789899999


No 114
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=66.45  E-value=0.63  Score=23.63  Aligned_cols=45  Identities=4%  Similarity=-0.070  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             999999999839949999998634299998875589994489999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI   67 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~   67 (83)
                      +..+-.-+--.+.|..++|+.+|+|++++..+..++...-...+.
T Consensus         9 A~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~   53 (69)
T d2i10a1           9 AMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLD   53 (69)
T ss_dssp             HHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999879062779999998687862998888599999999999


No 115
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=66.33  E-value=0.99  Score=22.46  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             39949999998634299998875589994489999999
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA   70 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la   70 (83)
                      .-+.|..+|+.+||+.+.||++.+|- -|.++.+..+.
T Consensus        19 A~~Gq~k~A~amGv~esqiSRwK~~f-~~q~smlLAvL   55 (78)
T d1zs4a1          19 AMLGTEKTAEAVGVDKSQISRWKRDW-IPKFSMLLAVL   55 (78)
T ss_dssp             HHHCHHHHHHHHTSCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             99720468999399899998998706-88999999999


No 116
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=66.33  E-value=4.1  Score=18.79  Aligned_cols=45  Identities=13%  Similarity=0.040  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             999999999839949999998634299998875589994489999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI   67 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~   67 (83)
                      +..+-.-.--.+.|..++|+.+|||++++.++..++...-...+.
T Consensus        13 a~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~   57 (73)
T d2fx0a1          13 AKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFK   57 (73)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999869351769999998784864999888499999999999


No 117
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=65.85  E-value=1.7  Score=21.08  Aligned_cols=46  Identities=15%  Similarity=0.078  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             9999999998399499999986342999988755899944899999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII   68 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~   68 (83)
                      +..+-.-.--.+.|..++|+.+|+|.+++..+...+...-...+..
T Consensus        14 a~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~~   59 (71)
T d1ui5a1          14 AADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEI   59 (71)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999998594626799999987948769998982999999999999


No 118
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=65.61  E-value=1.3  Score=21.71  Aligned_cols=25  Identities=12%  Similarity=0.175  Sum_probs=22.2

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9983994999999863429999887
Q gi|254781147|r   30 RKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        30 R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +...++|..|+|+.+|++++++.++
T Consensus        16 ~~~~~~s~~eia~~~~~~~st~~rl   40 (75)
T d1mkma1          16 KNPGDVSVSEIAEKFNMSVSNAYKY   40 (75)
T ss_dssp             HCSSCBCHHHHHHHTTCCHHHHHHH
T ss_pred             HCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             5799989999999979199999999


No 119
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=65.59  E-value=1.5  Score=21.34  Aligned_cols=49  Identities=8%  Similarity=0.047  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9999999998399499999986342999988755899944899999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      +..+-.-+--.++|..++|+++|+|.+++..+..++...-...+....+
T Consensus        12 a~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~~~~   60 (72)
T d1zk8a1          12 AAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIK   60 (72)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999998697756699999995979999989883999999999999999


No 120
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=65.09  E-value=3.2  Score=19.43  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=22.5

Q ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999983-994999999863429999887
Q gi|254781147|r   26 FRNIRKEA-KLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        26 ir~~R~~~-gltq~ela~~~gis~~~is~i   54 (83)
                      |..+-... ++|+.++|+.+|++.++++++
T Consensus        40 L~~L~~~~g~~t~~~La~~~~~~~~~vs~~   69 (145)
T d2hr3a1          40 LGAIDRLGGDVTPSELAAAERMRSSNLAAL   69 (145)
T ss_dssp             HHHHHHTTSCBCHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999998599979999999979898899999


No 121
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=64.75  E-value=0.58  Score=23.83  Aligned_cols=47  Identities=6%  Similarity=0.028  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             99999999983994999999863429999887558999448999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL   69 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~l   69 (83)
                      +..+-.-.--.++|..++|+.+|+|++++..+..++...-...+..+
T Consensus        13 a~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~~~~~~   59 (68)
T d2g7la1          13 AVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDAL   59 (68)
T ss_dssp             HHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999984903078999999978287676287759999999999999


No 122
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=64.06  E-value=1.7  Score=21.02  Aligned_cols=48  Identities=13%  Similarity=0.084  Sum_probs=34.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999839949999998634299998875589994489999999992
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      +-.-+--.++|..++|+.+|+|++++..+...+...-...+....+-+
T Consensus        13 l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~sK~~L~~~~~~~~~~~~   60 (69)
T d2np5a1          13 VAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKL   60 (69)
T ss_dssp             HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             999849140679999988398887998888399999999999999999


No 123
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=63.68  E-value=1.8  Score=20.98  Aligned_cols=23  Identities=17%  Similarity=0.175  Sum_probs=20.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             83994999999863429999887
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~i   54 (83)
                      ...+|+.|+|+.+|+|++++|+.
T Consensus        39 ~~plt~~ela~~l~vsk~~vs~~   61 (151)
T d1ku9a_          39 DKPLTISDIMEELKISKGNVSMS   61 (151)
T ss_dssp             SSCEEHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCCCHHHHH
T ss_conf             98928999999867770249999


No 124
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=62.65  E-value=1.1  Score=22.13  Aligned_cols=28  Identities=14%  Similarity=0.370  Sum_probs=23.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9839949999998634299998875589
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELETGK   58 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~G~   58 (83)
                      ....+|.+++|+.+|+|+++++++.+..
T Consensus        16 ~~~~~tl~~lA~~~~~s~~~l~r~Fk~~   43 (54)
T d1bl0a1          16 LESPLSLEKVSERSGYSKWHLQRMFKKE   43 (54)
T ss_dssp             TTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             4799999999999893999999999999


No 125
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=62.20  E-value=0.99  Score=22.47  Aligned_cols=31  Identities=13%  Similarity=0.146  Sum_probs=25.7

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999983994999999863429999887
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      .-+..+....|+|+.++|+.+|++.++++++
T Consensus        38 ~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~   68 (136)
T d2bv6a1          38 LVLTILWDESPVNVKKVVTELALDTGTVSPL   68 (136)
T ss_dssp             HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999997289979999999979788379999


No 126
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=62.11  E-value=2.2  Score=20.46  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             49999998634299998875589994489999999
Q gi|254781147|r   36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILA   70 (83)
Q Consensus        36 tq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la   70 (83)
                      ++..+|+.+|||.+.||+|  |.--|-. ...+|.
T Consensus        12 ~~~k~A~algis~~AVsqW--Ge~VPe~-RA~~ie   43 (61)
T d1rzsa_          12 TQRAVAKALGISDAAVSQW--KEVIPEK-DAYRLE   43 (61)
T ss_dssp             SHHHHHHHHTCCHHHHHHC--CSBCCHH-HHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHH--HCCCCHH-HHHHHH
T ss_conf             7999999969989999988--6307698-999999


No 127
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=61.15  E-value=5.1  Score=18.21  Aligned_cols=40  Identities=15%  Similarity=0.043  Sum_probs=30.0

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             8399499999986342999988755899944899999999
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH   71 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~   71 (83)
                      -.++|..++|+.+|||++++..+..++...=...+..+..
T Consensus        23 ~~~~t~~~Ia~~agvs~~~~y~~F~~k~~L~~~~~~~~~~   62 (75)
T d3c07a1          23 YDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAA   62 (75)
T ss_dssp             STTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             1407799999987939879998985999999999999999


No 128
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=59.08  E-value=3.2  Score=19.45  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=23.6

Q ss_pred             HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999-83994999999863429999887
Q gi|254781147|r   25 NFRNIRK-EAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~R~-~~gltq~ela~~~gis~~~is~i   54 (83)
                      -|..+.. ..++|+.++|+.+++++++++++
T Consensus        36 ~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~   66 (140)
T d3deua1          36 TLHNIHQLPPDQSQIQLAKAIGIEQPSLVRT   66 (140)
T ss_dssp             HHHHHHHSCSSEEHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999987499956999999978777678899


No 129
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=58.90  E-value=3.2  Score=19.46  Aligned_cols=26  Identities=19%  Similarity=0.123  Sum_probs=22.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98399499999986342999988755
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      ...|+|..++|+.+|+|..++..+-+
T Consensus        18 l~~G~s~~eIA~~l~iS~~TV~~~~~   43 (67)
T d1a04a1          18 IAQGLPNKMIARRLDITESTVKVHVK   43 (67)
T ss_dssp             HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99679989999997888889999999


No 130
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=58.53  E-value=3.1  Score=19.52  Aligned_cols=29  Identities=7%  Similarity=0.015  Sum_probs=24.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999983994999999863429999887
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +..+-..-.+|..|+|+.+|++++++++.
T Consensus        22 L~~L~~~~~~~~~eLa~~l~is~~~vs~~   50 (100)
T d1ub9a_          22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSH   50 (100)
T ss_dssp             HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHCCCCCEEHHHHHHHHHHCCCCCCHH
T ss_conf             98760479901999999986254323099


No 131
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=58.53  E-value=1.9  Score=20.73  Aligned_cols=51  Identities=10%  Similarity=0.017  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999999839949999998634299998875589994489999999992
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      +..+-.-.--.+.|..++|+.+|||.+++..+..++...-...+......+
T Consensus        16 a~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~   66 (76)
T d2fd5a1          16 ATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKR   66 (76)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999849130569999998389955004208999999999999999999


No 132
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=58.38  E-value=1.1  Score=22.09  Aligned_cols=27  Identities=7%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             839949999998634299998875589
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETGK   58 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G~   58 (83)
                      ...+|.+++|+.+|+|+++++++....
T Consensus        17 ~~~itl~~lA~~~~~S~~~l~r~Fk~~   43 (54)
T d1d5ya1          17 DQPLSLDNVAAKAGYSKWHLQRMFKDV   43 (54)
T ss_dssp             SSSCCCHHHHTTTSSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             899999999999892999999999999


No 133
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=58.05  E-value=3.9  Score=18.95  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=21.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999983994999999863429999887
Q gi|254781147|r   28 NIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        28 ~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      .+-....+|..|+++.+|++++++|.-
T Consensus        39 ~L~~~~~~~v~ela~~l~~s~s~vS~H   65 (108)
T d1u2wa1          39 ALCQDEELCVCDIANILGVTIANASHH   65 (108)
T ss_dssp             HHHHSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             998689914999998885572579999


No 134
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=57.59  E-value=3.2  Score=19.42  Aligned_cols=37  Identities=8%  Similarity=0.050  Sum_probs=28.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             8399499999986342999988755899944899999
Q gi|254781147|r   32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII   68 (83)
Q Consensus        32 ~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~   68 (83)
                      --+.|..++|+.+|||.+++..+..++..+-...+..
T Consensus        18 G~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~   54 (70)
T d2hkua1          18 GEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACA   54 (70)
T ss_dssp             CTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf             3574499999887888536873089999999999999


No 135
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=57.47  E-value=6  Score=17.83  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             39949999998634299998875589994489999999992
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL   73 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al   73 (83)
                      .+ |..++|+.+|||.+++..+...+...-...+..+.+.+
T Consensus        31 ~~-t~~~Ia~~agvs~~~~Y~~F~sK~~L~~a~~~~~~~~~   70 (88)
T d1t33a1          31 HA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFL   70 (88)
T ss_dssp             GS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             16-79999988399844310019899999999999999999


No 136
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=56.82  E-value=3.6  Score=19.13  Aligned_cols=28  Identities=18%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             HHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999983--994999999863429999887
Q gi|254781147|r   27 RNIRKEA--KLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        27 r~~R~~~--gltq~ela~~~gis~~~is~i   54 (83)
                      ..+....  ++|+.++|+.++++.++++++
T Consensus        40 ~~l~~~~~~~~t~~~la~~l~~~~~tvs~~   69 (115)
T d2frha1          40 TYISENKEKEYYLKDIINHLNYKQPQVVKA   69 (115)
T ss_dssp             HHHHHTCCSEEEHHHHHHHSSSHHHHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999808999988999999979788689999


No 137
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=55.56  E-value=2.5  Score=20.08  Aligned_cols=23  Identities=13%  Similarity=0.227  Sum_probs=19.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99499999986342999988755
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~iE~   56 (83)
                      .++.+++|+..|+|..+|..+-+
T Consensus         2 ~Vnk~~lA~iFGVS~~TI~~W~~   24 (68)
T d1j9ia_           2 EVNKKQLADIFGASIRTIQNWQE   24 (68)
T ss_dssp             EEEHHHHHHHTTCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             46899999996998899999998


No 138
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=55.54  E-value=6.1  Score=17.77  Aligned_cols=26  Identities=15%  Similarity=0.173  Sum_probs=21.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99983994999999863429999887
Q gi|254781147|r   29 IRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        29 ~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      +-.+..++..|+++.+|+|++++|+-
T Consensus        26 ~L~~~~~~v~el~~~l~~s~~~vS~H   51 (94)
T d1r1ua_          26 LLSVSEASVGHISHQLNLSQSNVSHQ   51 (94)
T ss_dssp             HHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99729956999999988787789999


No 139
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=54.15  E-value=4.3  Score=18.68  Aligned_cols=26  Identities=15%  Similarity=0.038  Sum_probs=22.5

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98399499999986342999988755
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      ...|+|-+|+|+.+|+|.+++..+-+
T Consensus        16 ~~~G~s~~eIA~~L~is~~TV~~~~~   41 (67)
T d1fsea_          16 LVQDKTTKEIASELFISEKTVRNHIS   41 (67)
T ss_dssp             HTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             98369899999998888889999999


No 140
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=53.85  E-value=4.6  Score=18.49  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             983994999999863429999887
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ....+|..|+|+.+|++++++|.-
T Consensus        33 ~~~~~~v~ela~~l~is~stvS~H   56 (98)
T d1r1ta_          33 ARSELCVGDLAQAIGVSESAVSHQ   56 (98)
T ss_dssp             TTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             819967999999989298899999


No 141
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=52.85  E-value=3.9  Score=18.93  Aligned_cols=47  Identities=13%  Similarity=0.063  Sum_probs=31.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             994999999863429999887558999448999999999289999960
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      |-.=+.||..+|++...|..|++. .+|+...|.....--+.++..|.
T Consensus        21 g~dWr~LA~~LGl~~~~I~~i~~~-~spt~~lL~~W~~~~~~tl~~L~   67 (85)
T d1ngra_          21 GDTWRHLAGELGYQPEHIDSFTHE-ACPVRALLASWGAQDSATLDALL   67 (85)
T ss_dssp             TTHHHHHHHHTTCCHHHHHHHHHS-SCHHHHHHHHGGGSTTCBHHHHH
T ss_pred             CCCHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHCCCCCHHHHH
T ss_conf             787999998939799999898728-98699999999874898299999


No 142
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=52.63  E-value=6.2  Score=17.75  Aligned_cols=28  Identities=14%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999983994999999863429999887
Q gi|254781147|r   26 FRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        26 ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      |...-.+.| +..+.|+.+||+++++.+=
T Consensus        26 I~~aL~~~g-n~~~aA~~Lgisr~tL~rK   53 (61)
T d1g2ha_          26 LKLFYAEYP-STRKLAQRLGVSHTAIANK   53 (61)
T ss_dssp             HHHHHHHSC-SHHHHHHHTTSCTHHHHHH
T ss_pred             HHHHHHHCC-CHHHHHHHHCCCHHHHHHH
T ss_conf             999999878-9999999979889999999


No 143
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=52.26  E-value=7.2  Score=17.34  Aligned_cols=34  Identities=12%  Similarity=0.060  Sum_probs=26.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999983994999999863429999887558
Q gi|254781147|r   24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG   57 (83)
Q Consensus        24 ~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G   57 (83)
                      .+...++.-.|.+..+||.+-|+|..+|.+|=+.
T Consensus        56 Rn~~I~~ef~G~n~~eLA~kY~lS~~~I~~Ii~~   89 (94)
T d1rr7a_          56 RDLRIWNDFNGRNVSELTTRYGVTFNTVYKAIRR   89 (94)
T ss_dssp             HHHHHHHHCCSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999908998999999989779999999999


No 144
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=51.85  E-value=4.9  Score=18.36  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=22.0

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9839949999998634299998875
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELE   55 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE   55 (83)
                      ...|+|-.++|..+|+|.+++..+-
T Consensus        24 l~~G~s~~eIA~~l~iS~~TV~~~~   48 (70)
T d1yioa1          24 TIRGLMNKQIAGELGIAEVTVKVHR   48 (70)
T ss_dssp             HTTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9828999999989797999999999


No 145
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=50.88  E-value=5.1  Score=18.22  Aligned_cols=27  Identities=15%  Similarity=0.016  Sum_probs=22.4

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             998399499999986342999988755
Q gi|254781147|r   30 RKEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        30 R~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      ....|+|-+|+|+.+|+|.+++..+-+
T Consensus        15 l~~~G~s~~eIA~~l~iS~~TV~~~~~   41 (65)
T d1l3la1          15 WIAVGKTMEEIADVEGVKYNSVRVKLR   41 (65)
T ss_dssp             HHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999369888999997888999999999


No 146
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=50.80  E-value=3.1  Score=19.55  Aligned_cols=24  Identities=4%  Similarity=-0.045  Sum_probs=20.0

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             983994999999863429999887
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ...++|+.++|+.+|++.++++++
T Consensus        46 ~~~~~~~~~ia~~l~~~~~~vs~~   69 (125)
T d1p4xa2          46 NKNIVLLKDLIETIHHKYPQTVRA   69 (125)
T ss_dssp             TTCCEEHHHHHHHSSSCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf             378836999999978984249999


No 147
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=50.05  E-value=1.5  Score=21.44  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=31.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             999999983994999999863429999887558999448999
Q gi|254781147|r   25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM   66 (83)
Q Consensus        25 ~ir~~R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l   66 (83)
                      .+-..+--.+.|..++|+.+|+|++++..+..++...-...+
T Consensus         7 ~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~a~~   48 (65)
T d2np3a1           7 VCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQAL   48 (65)
T ss_dssp             HHC---------------------------CCC-CHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             999987904077999999878688799988879999999999


No 148
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=48.00  E-value=1.8  Score=20.97  Aligned_cols=38  Identities=3%  Similarity=-0.073  Sum_probs=27.6

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             99839949999998634299998875589994489999
Q gi|254781147|r   30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI   67 (83)
Q Consensus        30 R~~~gltq~ela~~~gis~~~is~iE~G~~~~~~~~l~   67 (83)
                      +--.+.|..++|+.+|+|++++..+-.++...-...+.
T Consensus        22 ~G~~~~sv~~Ia~~agvs~~t~Y~~F~~k~~l~~~~~~   59 (71)
T d2iu5a1          22 NAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFE   59 (71)
T ss_dssp             SCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHH
T ss_conf             49640779999987571645897776799999999999


No 149
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.40  E-value=7.3  Score=17.32  Aligned_cols=27  Identities=11%  Similarity=0.148  Sum_probs=22.1

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999983994999999863429999887
Q gi|254781147|r   28 NIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        28 ~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      .+-.+..+|-.|+|+.+|+|++++++-
T Consensus        26 ~~L~~~~~s~~ela~~lg~s~~~v~~h   52 (190)
T d1ulya_          26 KLLRNKEMTISQLSEILGKTPQTIYHH   52 (190)
T ss_dssp             HHHTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999819987999999989199999999


No 150
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=46.58  E-value=5.6  Score=18.01  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98399499999986342999988755
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      ..+|+|.+++.+.++|++=++.+|++
T Consensus        41 lr~G~sveeI~elTkID~WFL~qi~~   66 (153)
T d1a9xa1          41 FRAGLSVDGVFNLTNIDRWFLVQIEE   66 (153)
T ss_dssp             HHTTBCHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCEEEHHHHHHHH
T ss_conf             98299999998861820099999999


No 151
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=46.50  E-value=6.1  Score=17.79  Aligned_cols=47  Identities=11%  Similarity=-0.040  Sum_probs=34.3

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCC
Q ss_conf             99983994999999863429999887558----999448999999999289
Q gi|254781147|r   29 IRKEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLDT   75 (83)
Q Consensus        29 ~R~~~gltq~ela~~~gis~~~is~iE~G----~~~~~~~~l~~la~al~i   75 (83)
                      .....|++-+++|+.+++|.+++...-+.    -.-.+...+...|...|+
T Consensus        32 ~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~gl   82 (87)
T d1p4wa_          32 RLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM   82 (87)
T ss_dssp             HHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf             999928999999878697999999999999998499999999999999689


No 152
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=45.71  E-value=2.6  Score=19.96  Aligned_cols=49  Identities=8%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHH
Q ss_conf             99999999983994999999863429999887558-99944899999999
Q gi|254781147|r   23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAH   71 (83)
Q Consensus        23 g~~ir~~R~~~gltq~ela~~~gis~~~is~iE~G-~~~~~~~~l~~la~   71 (83)
                      +..+-.-.--.+.|..++|+.+|+|.+++..+..+ +...-...+....+
T Consensus        11 a~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~~~Ke~L~~~~~~~~~~   60 (73)
T d1sgma1          11 ASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGK   60 (73)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999984924177999999868887799998599899999999999999


No 153
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=45.57  E-value=2.7  Score=19.86  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             983994999999863429999887
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ...++|+.++|+.+|++.++++++
T Consensus        45 ~~~~~t~~ela~~l~~~~~~vs~~   68 (115)
T d1hsja1          45 ESNEISSKEIAKCSEFKPYYLTKA   68 (115)
T ss_dssp             SCSEEEHHHHHHSSCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             899948999999978885359999


No 154
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=40.44  E-value=1.8  Score=20.86  Aligned_cols=21  Identities=14%  Similarity=0.096  Sum_probs=10.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             994999999863429999887
Q gi|254781147|r   34 KLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        34 gltq~ela~~~gis~~~is~i   54 (83)
                      |+|+.++|+.+|+++++++++
T Consensus        79 ~lt~~eLa~~l~i~~~tvsr~   99 (172)
T d2fbka1          79 GLRPTELSALAAISGPSTSNR   99 (172)
T ss_dssp             CBCHHHHHHHCSCCSGGGSSH
T ss_pred             CCCHHHHHHHHCCCHHHHHHH
T ss_conf             968999999978678579999


No 155
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.37  E-value=8.7  Score=16.86  Aligned_cols=25  Identities=36%  Similarity=0.304  Sum_probs=19.3

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9839949999998634299998875
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELE   55 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE   55 (83)
                      .....|++|+|+.+|++..+|.+.-
T Consensus        58 ~~~~~t~~eIa~~~~vs~~tI~k~y   82 (109)
T d1vola2          58 SAEKRTQKEIGDIAGVADVTIRQSY   82 (109)
T ss_dssp             SSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             1899899999999898999999999


No 156
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=39.90  E-value=11  Score=16.16  Aligned_cols=46  Identities=4%  Similarity=0.104  Sum_probs=31.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCHHHHC
Q ss_conf             4999999863429999887558---999448999999999289999960
Q gi|254781147|r   36 TQKEIRNRTGFAQSWISELETG---KSTINIDNMIILAHTLDTPLWKLL   81 (83)
Q Consensus        36 tq~ela~~~gis~~~is~iE~G---~~~~~~~~l~~la~al~i~~~~l~   81 (83)
                      .=+.||..+|++...|..+|..   ...|+...|.....--+.++.+|+
T Consensus        27 ~Wr~LA~~Lg~~~~~I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~   75 (102)
T d1d2za_          27 VWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLF   75 (102)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf             4999999949999999999863467997499999999836898199999


No 157
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=34.76  E-value=13  Score=15.86  Aligned_cols=26  Identities=15%  Similarity=0.141  Sum_probs=19.3

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98399499999986342999988755
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELET   56 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~   56 (83)
                      .....|+.|+|+.+|+|..+|.+.-+
T Consensus        57 ~~~~~t~~eIa~~~~vs~~tI~~~yk   82 (95)
T d1aisb2          57 EGEKRTQREVAEVARVTEVTVRNRYK   82 (95)
T ss_dssp             TTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             39996899999998988999999999


No 158
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=34.32  E-value=14  Score=15.63  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=20.7

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             983994999999863429999887
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ...-+|..|+|+.+|+|++++++-
T Consensus        25 ~~~~~~~~ela~~l~~s~~~v~~H   48 (194)
T d2p4wa1          25 TKRPYFVSELSRELGVGQKAVLEH   48 (194)
T ss_dssp             HHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             808987999999989099899999


No 159
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.83  E-value=11  Score=16.23  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             CCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf             399-4999999863429999887
Q gi|254781147|r   33 AKL-TQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gl-tq~ela~~~gis~~~is~i   54 (83)
                      ..+ |+.+||+..|+|++++.+.
T Consensus        25 ~~LPs~~eLa~~~~vSr~tvr~A   47 (74)
T d1hw1a1          25 TILPAERELSELIGVTRTTLREV   47 (74)
T ss_dssp             SBCCCHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99834999999989798999999


No 160
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.69  E-value=12  Score=16.01  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=22.4

Q ss_pred             HHHHH-HHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999-9983994999999863429999887
Q gi|254781147|r   25 NFRNI-RKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        25 ~ir~~-R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      .|..+ +.....+..++|+.+|+++++++..
T Consensus        13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~m   43 (63)
T d2isya1          13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQT   43 (63)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             9999985589770999999968994439999


No 161
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=32.32  E-value=7.4  Score=17.28  Aligned_cols=22  Identities=14%  Similarity=0.065  Sum_probs=11.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999887
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i   54 (83)
                      .|=|...+|.+-|++...|.++
T Consensus         9 ~GDTl~~IA~~y~vs~~~i~~~   30 (48)
T d1e0ga_           9 KGDSLSSIAKRHGVNIKDVMRW   30 (48)
T ss_dssp             TTCCHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999999979889999987


No 162
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=31.39  E-value=15  Score=15.47  Aligned_cols=45  Identities=9%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC-----C-------------CCCCCHHHHHHHHHHHCC
Q ss_conf             98399499999986342999988755-----8-------------999448999999999289
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELET-----G-------------KSTINIDNMIILAHTLDT   75 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~-----G-------------~~~~~~~~l~~la~al~i   75 (83)
                      ...-+|-+++|+..|+++.++.++-+     |             ...|.--+|..+-++++-
T Consensus        20 ~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~p~~ItL~dI~~aie~   82 (138)
T d1ylfa1          20 PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAVNV   82 (138)
T ss_dssp             CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEECCCHHHCCHHHHHHHHHC
T ss_conf             998684999999979699999999999988898685349998331478744689999999843


No 163
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=29.64  E-value=4  Score=18.89  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=17.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999887
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i   54 (83)
                      .++|+.++|+.++++.++++++
T Consensus        49 ~~~t~~eia~~~~~~~~~vs~~   70 (125)
T d1p4xa1          49 NTLPFKKIVSDLCYKQSDLVQH   70 (125)
T ss_dssp             SEEEHHHHHHHSSSCGGGTHHH
T ss_pred             CCCCHHHHHHHHCCCCCHHHHH
T ss_conf             9867999999968882439999


No 164
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=29.33  E-value=14  Score=15.70  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=19.1

Q ss_pred             HHCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf             98399-4999999863429999887
Q gi|254781147|r   31 KEAKL-TQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        31 ~~~gl-tq~ela~~~gis~~~is~i   54 (83)
                      -...+ |..+||+..|+|++++.+.
T Consensus        18 ~G~~LPse~~La~~~~vSr~tvr~A   42 (78)
T d3bwga1          18 QGDKLPVLETLMAQFEVSKSTITKS   42 (78)
T ss_dssp             TTCBCCCHHHHHHHTTCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9399937999999988798999999


No 165
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.68  E-value=20  Score=14.71  Aligned_cols=19  Identities=11%  Similarity=-0.001  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             4999999863429999887
Q gi|254781147|r   36 TQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        36 tq~ela~~~gis~~~is~i   54 (83)
                      |....|+.+|+|++++|+-
T Consensus        22 s~t~AA~~l~isq~avs~~   40 (89)
T d2esna1          22 NVGTAASELAISASAFSHA   40 (89)
T ss_dssp             SHHHHHHHHTCCHHHHHHH
T ss_pred             CHHHHHHHHCCCCCHHHHH
T ss_conf             9999999877998475599


No 166
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=24.14  E-value=18  Score=15.03  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=17.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999887
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is~i   54 (83)
                      ..++..+||+..|+|++++.+.
T Consensus        24 ~~l~~~~La~~~~vSr~tvr~A   45 (69)
T d2hs5a1          24 ARLSEPDICAALDVSRNTVREA   45 (69)
T ss_dssp             CEECHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9669999999989798999999


No 167
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=23.98  E-value=21  Score=14.54  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHCC--CCHHHHHHHHHH-HHHHHHHH
Q ss_conf             999999999999839--949999998634-29999887
Q gi|254781147|r   20 MIFVNNFRNIRKEAK--LTQKEIRNRTGF-AQSWISEL   54 (83)
Q Consensus        20 ~~~g~~ir~~R~~~g--ltq~ela~~~gi-s~~~is~i   54 (83)
                      ..+-..|+..-.+.|  =|.+|+|+.+|+ |.+++..+
T Consensus         8 ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~   45 (71)
T d1jhfa1           8 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH   45 (71)
T ss_dssp             HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf             99999999999982889889999977299999999999


No 168
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=23.44  E-value=22  Score=14.49  Aligned_cols=20  Identities=10%  Similarity=0.121  Sum_probs=14.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q ss_conf             39949999998634299998
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWIS   52 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~is   52 (83)
                      ++-|.+|||+.+|++...+.
T Consensus        83 ka~TleeLA~~~gid~~~L~  102 (146)
T d1d4ca3          83 EGKTIEELAKQIDVPAAELA  102 (146)
T ss_dssp             EESSHHHHHHHHTCCHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHH
T ss_conf             74889999998698978999


No 169
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=22.87  E-value=22  Score=14.41  Aligned_cols=46  Identities=9%  Similarity=0.107  Sum_probs=30.4

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC------------C------CCCCCHHHHHHHHHHHCCC
Q ss_conf             98399499999986342999988755------------8------9994489999999992899
Q gi|254781147|r   31 KEAKLTQKEIRNRTGFAQSWISELET------------G------KSTINIDNMIILAHTLDTP   76 (83)
Q Consensus        31 ~~~gltq~ela~~~gis~~~is~iE~------------G------~~~~~~~~l~~la~al~i~   76 (83)
                      .+..+|-+++|+..|++++++.+|-+            |      .+.|.--+|..+-++++-+
T Consensus        15 ~~~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGyLar~p~~Itl~dI~~ave~~   78 (127)
T d1xd7a_          15 MDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKDPADISLLEVYRAVQKQ   78 (127)
T ss_dssp             TCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSCGGGCBHHHHHHHHCC-
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCC
T ss_conf             4999899999988695999999999999980765126899985106897869299999998187


No 170
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}
Probab=21.43  E-value=8.7  Score=16.86  Aligned_cols=44  Identities=11%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             999863429999-88755899944899999999928999996088
Q gi|254781147|r   40 IRNRTGFAQSWI-SELETGKSTINIDNMIILAHTLDTPLWKLLKP   83 (83)
Q Consensus        40 la~~~gis~~~i-s~iE~G~~~~~~~~l~~la~al~i~~~~l~~P   83 (83)
                      .|...|.++=-+ +.++.|-..|+...+..+.+.+++|+.-++.|
T Consensus        15 ~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRP   59 (247)
T d1twda_          15 TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP   59 (247)
T ss_dssp             HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCS
T ss_pred             HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999849998998477666997999999999998649972799704


No 171
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=21.11  E-value=20  Score=14.73  Aligned_cols=34  Identities=12%  Similarity=0.149  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999983994999999863429999887
Q gi|254781147|r   21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        21 ~~g~~ir~~R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      .+-..+-.+....+.|-.++|+.+|++.+.|.+.
T Consensus        11 lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~   44 (70)
T d1sfua_          11 LVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQ   44 (70)
T ss_dssp             HHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf             9999997458777704999999959889898899


No 172
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=20.73  E-value=25  Score=14.15  Aligned_cols=19  Identities=5%  Similarity=0.038  Sum_probs=12.8

Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q ss_conf             3994999999863429999
Q gi|254781147|r   33 AKLTQKEIRNRTGFAQSWI   51 (83)
Q Consensus        33 ~gltq~ela~~~gis~~~i   51 (83)
                      +.-|.+|||+.+|++...+
T Consensus        82 ~adtleeLA~~~gid~~~L  100 (143)
T d1y0pa3          82 TADSLVKLGKMEGIDGKAL  100 (143)
T ss_dssp             EESSHHHHHHHHTSCHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHH
T ss_conf             3583999999859897898


No 173
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=20.19  E-value=26  Score=14.08  Aligned_cols=25  Identities=8%  Similarity=0.143  Sum_probs=21.1

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9983994999999863429999887
Q gi|254781147|r   30 RKEAKLTQKEIRNRTGFAQSWISEL   54 (83)
Q Consensus        30 R~~~gltq~ela~~~gis~~~is~i   54 (83)
                      ......+..++|+.+|+++++++..
T Consensus        17 ~~~~~v~~~~iA~~L~vs~~SVs~m   41 (61)
T d2ev0a1          17 EEKGYARVSDIAEALAVHPSSVTKM   41 (61)
T ss_dssp             HHHSSCCHHHHHHHHTCCHHHHHHH
T ss_pred             HCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             3589750999999958995159999


No 174
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.12  E-value=21  Score=14.57  Aligned_cols=35  Identities=6%  Similarity=0.042  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHC-CC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999983-99-49999998634299998875
Q gi|254781147|r   21 IFVNNFRNIRKEA-KL-TQKEIRNRTGFAQSWISELE   55 (83)
Q Consensus        21 ~~g~~ir~~R~~~-gl-tq~ela~~~gis~~~is~iE   55 (83)
                      ..+.+|-.+|.+. ++ +.+||.+.-|++..++.+|.
T Consensus        44 ~~A~~II~yR~~~G~f~sledL~~V~Gi~~k~~eki~   80 (91)
T d2edua1          44 KKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFL   80 (91)
T ss_dssp             HHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf             9999999999985997889998008898999999999


Done!