RPSBLAST alignment of GI: 254781147 and protein with PDBid: 1y9q

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Length = 192

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L+D + + +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A
Sbjct: 3  LTDVMFKSQ--IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIA 60

Query: 71 HTLDTPLWKLL 81
            L+       
Sbjct: 61 SGLEASFSAFF 71