BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781147|ref|YP_003065560.1| transcriptional regulator
[Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 83

 Score =  170 bits (430), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST
Sbjct: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          INIDNMIILAHTLDTPLWKLLKP
Sbjct: 61 INIDNMIILAHTLDTPLWKLLKP 83


>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 608

 Score = 22.7 bits (47), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQK 38
           +P ++   PH  + I       + NF  ++KE   +Q+
Sbjct: 79  LPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQ 116


>gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 172

 Score = 21.9 bits (45), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 44  TGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           TGF   W+ EL  G++ +++ N  I    + TP  KL++
Sbjct: 91  TGFFLGWLGELGKGRA-VSVSN--IKFRGMVTPDCKLVE 126


>gi|254780909|ref|YP_003065322.1| hypothetical protein CLIBASIA_04040 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score = 20.8 bits (42), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQS 49
           NI  E++ TQ+++ N+T  +Q+
Sbjct: 98  NIEPESQETQQQVINKTTTSQT 119


>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 392

 Score = 20.4 bits (41), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 37 QKEIRNRTGFAQSWISELETGKSTI 61
          ++ +RN+     S I  ++ GK+T+
Sbjct: 4  KRYVRNKESLGLSTIGHVDHGKTTL 28


>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 392

 Score = 20.4 bits (41), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 37 QKEIRNRTGFAQSWISELETGKSTI 61
          ++ +RN+     S I  ++ GK+T+
Sbjct: 4  KRYVRNKESLGLSTIGHVDHGKTTL 28


>gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 116

 Score = 20.0 bits (40), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 46 FAQSWISELETGKSTINIDNMIILAHTLD 74
          +AQ ++ E E GK T   D M   + T+ 
Sbjct: 22 YAQPFLEETEKGKKTEITDFMTATSGTVG 50


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,507
Number of Sequences: 1233
Number of extensions: 1622
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 83
length of database: 328,796
effective HSP length: 52
effective length of query: 31
effective length of database: 264,680
effective search space:  8205080
effective search space used:  8205080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)